RNA id: XM_021612920.2


Basic Information

Item Value
RNA id XM_021612920.2
length 4039
RNA type mRNA
GC content 0.56
exon number 25
gene id ccdc18
representative False

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 53088713 ~ 53121268 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CGACCTCTTCGTGAAACCAATCACTTTTCACACAGTTCCCTCTCGTCCAATCGAATGACGCGATGCTGAGCGATGTTTACATTTTTGGCAGTGAGCGATTGAACTGCCAAGCAGTAAACGATGTTTAAACTTTATGAACCTTTTCAAAGATTACCGCGTATGTTCCTATTCCACTAGCGAAGTAACTTTTTCCAGAGTACCACAGCACATAGTTGCTATACATCTtcagttagctaactagctagctaacaaataaCCCTAGCAACCTGTTGATTGATAAACTGGCTACGCGAGTTgttgatgttagctagctagctaacgttagcgtgtGCAAATGACAGCCACCAATGTTTAACAACAACGACGAGGATATTGTCGAAGATGTGGCCAGTTTAAGGAATCAATTGCGATTGACGGAGATTAGTTTGCAAAGTTTGGGAGAACAATTAAGTCACTCAGGACATGAGAGTCACAGTGAGCGGTCTGAGAGGAGTTTAGTACATGGGTTGCCAGGTCTTCTGTCCCTAGAGGACCTACAGCGGCCTGATGTCGCACATCCTCCACCTGACAACCCAAGTCTTGAGAGACCCCTCCACAGAAGTAGGACAGCTGAGAGACAGGCCTGTGAAAGCCTACCCAGTACTGACtccaggTGCTCCTCGTCTAGGGCAGTGGAGATGGAGGTTGCCCCCCTCAGGAAGAAGCTAGGCTGCCTGCGTCAGGAGAACGCCTCCCTGGCTCTGGAGAACAGACAGCTCATCAGTGACCTGGAGGCGACCCAGATTGAACTGGCCAGCTCTAAAACCAAGGCCCGTCTCCTGGGCTCCACAGTAGGGGCTAAGACCTCCAGTGTGACCGTCATGAGGGAGCAGATCCTGGGCTTGGAGGCTGAGGTGGAGGCCCAGGCCAAAGAACTCCGGACTGCAGAGTTGAAGGCAGAGCAGAGCCAGCAGGCAGCAACCCAAAGTGACAGACAGGTAGCTGAACTCAGAGACGAACTGAGCATGCTCAGAACAGAGCTTACCGACACAACCAGACAAGGAAAACGAGCGGAGCAACAAAGGAACCAAGCCCTTCGCAATGCGGAGAAACTCACAGACGCTTTCAAAGACTACAAGACAAATATTTCCATTAAGCTGAAGAAGGTCATGGAGAGCGAGAGCAAACTGAAGGAGAGTCTCATCGTGtgtgaccgagagagagaggagctggagagCAAGTGTACCGTGTTGGAGAGAGCGCGAGAGGAGCAAGGCCAAACCATCAGTGAGCTGAAGGAGGAGGTCACCCAGGCGCGCACACTCAACACAAAAACCTCTGAGCTCCAGGGACGTCTGGAGGAGGCTGCCCAGCGGGCCTCGCGGCTGGAGTTGGAGCTGGGGGAGCGGGCCTTGGCGGCCAGGGAGCTGACCTCTCTCCACAGGGAGACGGAGGACCTCCGGGCCCTTACCCAGTGCCAGGAACACAGGCTGGTCCAATGCCAGAGAGAGGCCCAGCAGAGCCTGGCTGAATTAGCTAGTCTGGAGAGTATATTGGCTTTGCTGCACCTCCGAGAGGTATGGAGGATTGGGGACATGCGCACGTACACGCACGGTGATGAGGGACCTCTCTGTGTGAAGCCCTGTATGCTGCTCCCAGTGGATTACACAGGAACGACAGACCCACTCAGACCCAAGCCAGGTGAGCGATACCAGCAGCTGCTCCCAGTGCTTCAGGCGGTGGAGGCGGAGCGGGGCAGACAGAGCTCCCTGGCCTCCAGGctccaggagaggctgtctaaaGCCCAGGAGGAAGTCTCCTCCCTGCACAGCTCCATGGCCCAGAGGGCCTCGCACTACCAGCAGGTCCACAGCGAGCTGCTCCAGAGGGCCAGCCTGGCTACCGATGCcgagaaggagTTGAAGAAGAAGAGTGCTCGTGTGGCGGCTCTGGAGAAACAGCTGCAGGAGAAGAGCTCTGCCTACTCACTGGCCGCTCTGAAGAACACTCAGCTGGAGCAGGAGctgctgGAGAAGGCCAGTGCTATCCAGCACTACCAGTCTGTGATGACCAAGAAGCAGAGGGACTTCCAACAGGCTCTGGACAAAAGTAAAAAGGCCCGTGCTGACCAGTGCAAGGAACTGCAGGACAGAGTGGAACTGCTGCAGTTGTCTCTGGACCAGAACCGGGCCCAGGTCTCAGAGCTGGAGCAGGCTGTGTGTTTTGCCCAGAGGGAGAGACACGAGGCCCAGAGCACAGCCCACCTATTGCAGGTCTCCCTGGACCAGCTCACACAGgagagagagaccaacgtGAGACACGGCGAGGAGGCTCTACGGAGTGTCAGAGAGCAGGCCACCGAGTCTTCCACCAAGGTGAGGCAGCTGGAGACAGCCCTGTCGTCCTGTCGGGATGAGCTGAGCTCCCGCCTACTGCAGACGGAGGACGCTAAGCAGCACTATCAGAGACAGCTGGACGTCAAGGGCAAAGAGCTGTCGTCTCTGCAGGAGGAGTTGCGTAGCAGCGCTCTGGTGTGTGGCCGCTCCAGTGAGCGCTGTGTCCAGCTTCAGTACTCCCTGCAGCGGCAGCAGAGCATGCTACAGGAGAGCAGCACCCGTGTGGCCGAACTGGAGGAAAGCCAGAGCCAGCTACAGGGACAGGTGTCTGCGTTGGAGCAGGAGGTGGAGCGGGCGCGCTTGTCTCTGGAGGAggagctgaggaggagagaggaggtggtgcAGGAGGCTGACAAGGAGGTGCAGGAGAAGAGGCGACAGGCTGCACAGCTCTCTGGCTCTGTCACTCAGCTGTCGTCTGAGATGAATCGGTGTCGTGGGGAGCTGTCATCCATGGAGCAGGAGCTGCAAAGGCTGCGGAAGGACGCCAGCATGAAGTCCTCCCAGCTCAGCTGCATGGAGGAGACCCTGCAGCAGACCCAGGGCCTACTGGAGAAGAAGAATGACGCGGTTGTGGACTTGGAGGAGAAGCTCCACCGCTGCGAGGAGGACAGGCGGAACTCTGTGCAGCGGGCGGAGACTCTGGAGGGACAGCTACAGGGGGTGCGCGGTGAGATGCACGACACCCTAGAGAACCTACAGGAGCTGAGAGAGCTGTTACAGCGCACGCAGGTCAGCGCAGACGAACGACAGACATCACTGGAGAAATTGTCGGCCGAGCTCAGGGAAAGCCAGAGGGAGTTGGAGGAGAGGAACCACGAGGTGTTGGACATGGACACAGcattgaaggagagacagggggagctCCAGCAGAGAGCACAGCTGCTGGGCCAGTTGGACGTGGCCATCAGAGACCATAAGGTGGAGATGGACAAGAAGGTTCAGGCCCTACAGCAGACTCtggcccagagagagggagaggtcaaAGACCGAGACAAGCGGGTGGCGTTTTTGAGTGAGAGGTTAGACCTGCTAAAGGCACAACTACAAGGGAAGGAGGATTccgagaagGACTCTCTGGGGCAGGGCCAGAACCTGCGTGTGTGTCAGGAGGAGCTGCAGAGAACAACGCAAGAGCTGCGGGACACACAGACTCGCTGTGAGAGCCTGACCGAAGAGCTGGACAGCATCACTCAACATGCCAGGGAAAAGGAGGCGCAGGTGAGGAGTCTAGAGGAGAAGCTGTCTGCCAGGGAGGGCCGCTGGGTCCAGGGGGAAGCCAGACTGCAAgtcaccatctcctccctacaGCAGGAGCTGGAGCAGGAGAGGGAACAGCACAGCAAGGAGGGTTATTCTACGAGGTCCGAAGCCTGCTGTTTTTCTGTTCCCACCTGATAATTAgtatcacccacctggtgtctcatgTGAACAATGGGGGGGAGAgacgcagtggaactggcttcgaggtccagagttgagtttttGAGGGCACTACTGTATATATCACCTCATCGATCTCTTCCCCAGTCCCTCTTTCACTTCTTTGTTTCTCGTAATTTCCCTAATCACCAGTCCTTTTACACATGCAATAACTGCTGAAGTTCCTACAGTACGCGCTTGTAACTTCGCTCTCCTCCTTCCGCCTTTCTCTGTTGCCCCTC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU818928 lncRNA upstream 235420 52838834 ~ 52853293 (+) True G720829
TU818902 lncRNA upstream 307412 52781097 ~ 52781301 (+) True G720803
TU818901 lncRNA upstream 309368 52779047 ~ 52779345 (+) True G720802
TU818893 lncRNA upstream 317541 52770945 ~ 52771172 (+) True G720795
TU818890 lncRNA upstream 320254 52768145 ~ 52768459 (+) True G720792
TU818967 lncRNA downstream 2956 53119204 ~ 53119627 (+) True ccdc18
TU819086 lncRNA downstream 11825 53128073 ~ 53128294 (+) True G720979
TU819113 lncRNA downstream 74914 53191162 ~ 53251843 (+) True gng12a
TU819170 lncRNA downstream 166857 53283105 ~ 53283355 (+) True G721056
TU819845 lncRNA downstream 201855 53318103 ~ 53318320 (+) True G721613
XM_021612913.2 mRNA upstream 8170 53070354 ~ 53080543 (+) False mtf2
XM_021612911.2 mRNA upstream 8170 53070355 ~ 53080543 (+) False mtf2
XM_021612912.2 mRNA upstream 8170 53070621 ~ 53080543 (+) False mtf2
XM_021612909.2 mRNA upstream 8170 53070622 ~ 53080543 (+) False mtf2
XM_021612910.2 mRNA upstream 8170 53070624 ~ 53080543 (+) False mtf2
XM_036985653.1 mRNA downstream 6060 53122308 ~ 53152141 (+) False scinlb
XM_021612921.2 mRNA downstream 14356 53130604 ~ 53152141 (+) True scinlb
XM_021612922.2 mRNA downstream 37633 53153881 ~ 53181479 (+) True wls
XM_021611250.2 mRNA downstream 74857 53191105 ~ 53249363 (+) False gng12a
NM_001165215.1 mRNA downstream 75036 53191284 ~ 53249559 (+) False gng12a
TU815927 other upstream 2447547 50636696 ~ 50641166 (+) True LOC110530024
TU815871 other upstream 2694877 50385546 ~ 50393836 (+) True LOC110530019
TU815524 other upstream 3234521 49853387 ~ 49854192 (+) True LOC118965615
TU814748 other upstream 3541628 49546212 ~ 49547085 (+) True G716993
TU814604 other upstream 3754941 49332841 ~ 49333772 (+) True G716862
TU819925 other downstream 260984 53377232 ~ 53377705 (+) False G721689
TU820195 other downstream 554148 53670396 ~ 53671859 (+) False mrpl34
TU820196 other downstream 554148 53670396 ~ 53671859 (+) True mrpl34
TU820345 other downstream 809969 53926217 ~ 53927959 (+) True rps28
TU820675 other downstream 1507926 54624174 ~ 54670114 (+) True LOC118965528

Expression Profile