RNA id: XM_036984525.1



Basic Information


Item Value
RNA id XM_036984525.1
length 829
RNA type mRNA
GC content 0.40
exon number 4
gene id gng12a
representative False

Chromosome Information


Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 53191105 ~ 53251843 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


TTGGTAGCCCCACCTTTCACAGtttttttTCCCAAGACTCAATAAGGTTGGATTTCAAGTCTTTGACTAGTGGTGTGGAGGCCAAGATGTCATCGAAGATGCCAAGCTCTAACAACATAGCCCAAGCCAGGAGGACAGTACAACAGCTGAGGATAGAGGCCAGTATTGAGAGGATAAAGGTATCCAAGGCCTCTGCGGACCTCATGCACTACTGTGGCGAACACGCCAAGTACGACCCTCTGCTCATGGGCATACCTGCCTCAGAGAACCCCTTCAAGGACAAAAAGCCTTGCACTATATTGTAGTGAAGCCTTTTTATTTATCTGTTTGCTTCTTAATGTTGCCTGTATTTTATTTTCCGGGGAGAATTGGGATCTAAAACCACTACTCATCCATCAATCTTGCCTTAAAGCCTGTAACATTTCCCTTTAATGAAAATGCTGTATTTTATCACTCAATTTGAACTTGCCATAGTTACATACATAACATACAGTAAACAGTTAGAATATACActgccattcaaaagtttggggtcacttagaaatggtccattaaaataacatcaaattgatctgaaatacagtggagacattgttaatgttgtaaatgaccattgtaactggaaatggcagattttttatggaatatctacattagCGTACAGAGGGCcactatcagcaaccatcagtcctgtgttgcaatggcacgttgtgttagttaatccaagttgataattttaaaaggctaattgatcattagaaaacccttttgcaattaggTTAGCAccgctgaaaactgttgttttgattaaagaagcaaataAACTGac

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU819086 lncRNA upstream 99342 53128073 ~ 53128294 (+) True G720979
TU818967 lncRNA upstream 108009 53119204 ~ 53119627 (+) True ccdc18
TU818928 lncRNA upstream 374343 52838834 ~ 52853293 (+) True G720829
TU818902 lncRNA upstream 446335 52781097 ~ 52781301 (+) True G720803
TU818901 lncRNA upstream 448291 52779047 ~ 52779345 (+) True G720802
TU819170 lncRNA downstream 33546 53283105 ~ 53283355 (+) True G721056
TU819845 lncRNA downstream 68544 53318103 ~ 53318320 (+) True G721613
TU819867 lncRNA downstream 86701 53336260 ~ 53336461 (+) True G721635
TU819871 lncRNA downstream 92718 53342277 ~ 53342488 (+) True G721639
TU819912 lncRNA downstream 123740 53373299 ~ 53373566 (+) True G721679
XM_021612922.2 mRNA upstream 46157 53153881 ~ 53181479 (+) True wls
XM_036985653.1 mRNA upstream 75495 53122308 ~ 53152141 (+) False scinlb
XM_021612921.2 mRNA upstream 75495 53130604 ~ 53152141 (+) True scinlb
XM_021612918.2 mRNA upstream 106368 53088714 ~ 53121268 (+) False ccdc18
XR_005052900.1 mRNA downstream 8881 53258440 ~ 53280342 (+) True LOC118965525
XM_021612924.2 mRNA downstream 76029 53325588 ~ 53336053 (+) False LOC110530108
XM_036985656.1 mRNA downstream 76029 53325588 ~ 53336053 (+) True LOC110530108
XM_021612926.2 mRNA downstream 202589 53452148 ~ 53455033 (+) True LOC110530110
XM_036985666.1 mRNA downstream 420789 53670348 ~ 53674103 (+) False mrpl34
TU815927 other upstream 2586470 50636696 ~ 50641166 (+) True LOC110530024
TU815871 other upstream 2833800 50385546 ~ 50393836 (+) True LOC110530019
TU815524 other upstream 3373444 49853387 ~ 49854192 (+) True LOC118965615
TU814748 other upstream 3680551 49546212 ~ 49547085 (+) True G716993
TU814604 other upstream 3893864 49332841 ~ 49333772 (+) True G716862
TU819925 other downstream 127673 53377232 ~ 53377705 (+) False G721689
TU820195 other downstream 420837 53670396 ~ 53671859 (+) False mrpl34
TU820196 other downstream 420837 53670396 ~ 53671859 (+) True mrpl34
TU820345 other downstream 676658 53926217 ~ 53927959 (+) True rps28
TU820675 other downstream 1374615 54624174 ~ 54670114 (+) True LOC118965528

Expression Profile