RNA id: XM_021612923.2



Basic Information


Item Value
RNA id XM_021612923.2
length 1418
RNA type mRNA
GC content 0.43
exon number 4
gene id LOC110530106
representative False

Chromosome Information


Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 53255197 ~ 53258515 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


GACGTTATCCTATGCACTTGCATTGTTCTTGCGATATTATCTGTGGACACCGGTTGTTGTCTCATTTCCAACAGCGATAAACAGAGTAGCTACTGTGTCACAACTTCACTAGCACTAACAGTGACATATCAGCAAGCAATATTATTGTCTCGATTTTGATTTCATGTGCAAAATGACATTTGAGGAACTAAGTGGGGATTATTCTGCAGAAAGGATGGATACAGTGGCAAAAGCATTGGAAGAGGTTCTCTCATTGGCATTACCCCAAGGATGCATTACAGTAGGGGTCTATGAAGCAGCAAAATCATTGAATGTAGATCCAGATAATGTGGTTCTGTGCATCCTGGCAACAGATGACGAGGATGTAAAGGACGTGGCCCTTCAGATCCACTTCACCCTGATCCAGGCATTCTGCTGTGAGAATGACATCAGCATCCTGCGAGTTAACAACACCAGGCGTCTGGCAGAGATCCTCGGCGGAGGGACACAGGGGGGAGAGCCCATGGATCTGCACTGTGTCCTGGTCACTAGCCCACACTCCTCCTCCTGGAAAGACCCAGCCCTGAGCAAAGTTAACCGCTTCTGCAGGGAGAGCCGGTGTATGGACCAGTGGGTACCCATCATTAACCTCCCTGAGCGATGAAGGGTCCCCCCAACAGCAAGACATGTGAAGGACTCTCTCTGTACGGGAGTAGAGTGATCCCTGATGGACACACTACCCTGGGAAAATTCCTGATGTAGGAAAAAGAAGACAAACAACCACAAAATAAAGCATtttgagaagaaaaaaagaagATCAGATCCAGCCATCTAGATGGGATACAAAAGGGGGTGGATTTCCACCGGGTCTGGTGGAGTTGAACTATCAGCTATGGCAGTCAGGGCGAGATGACGAGGCACTTTTTATGTTCAGTCACCAGACCGAAACCGACGTCTGTGCTTTTTAACGGAAGATGGACACACTGTACAGAAAGATAAAATCATGTATGGCAGAGCACTTCACCTTGTGGGGACTTAAAAGATTGAGAGAAACAAAAAGATGAGCTCTTTTGTAGCCACTGTTGTTAAGACAACCAAGGCCTCTCTTTTTGCCGAAACAGAGCACTTGTAGAAACACTGGACTTGTTGTATTTTTGTATTCACAATGTTGATGTTGTCTTTACTATTGTTATATAATTATTTAAAAAGGGAAGGGCTAAATATCCAATGAACAGTGAAGATACTATGCATTCAGTCAGTGTTTCCATTGCCAACAGTTTTTTACACAAGTGAATAGTTCTTTTTTTACAGTTAAGTTATTTCTTAtgatatttaaatgtatttatgtttacaATTTTTATACCATTATCTCTCTGCAATTGTCTGTAAAGACACAGGTATATTATTGTTGTCAATAAAAAGTATTTTTGGAGCCAGAA

Function


GO: NA

KEGG: NA

JBrowse2


Loading

Neighbor


RNA id RNA type direction distance location representative gene id
TU819757 lncRNA downstream 66382 53188582 ~ 53188815 (-) True G721526
TU819756 lncRNA downstream 68190 53186667 ~ 53187007 (-) True G721525
TU819703 lncRNA downstream 71019 53183722 ~ 53184178 (-) True G721472
TU819747 lncRNA downstream 101835 53153123 ~ 53153362 (-) True G721516
TU819746 lncRNA downstream 102226 53152677 ~ 53152971 (-) True G721515
TU819831 lncRNA upstream 38279 53296109 ~ 53296328 (-) True G721599
TU819863 lncRNA upstream 72635 53330465 ~ 53330996 (-) True G721631
TU819870 lncRNA upstream 82911 53340741 ~ 53340962 (-) True G721638
TU819918 lncRNA upstream 118200 53376030 ~ 53376247 (-) True G721685
TU819940 lncRNA upstream 129645 53387475 ~ 53387680 (-) True G721704
XM_021612915.2 mRNA downstream 187411 53059646 ~ 53067786 (-) True dipk1aa
XM_021611261.2 mRNA downstream 233051 53019506 ~ 53022146 (-) True LOC110529119
XM_021612908.2 mRNA downstream 237093 53015178 ~ 53018104 (-) True LOC110530096
XR_005052899.1 mRNA downstream 253528 52999599 ~ 53001669 (-) True LOC110530097
XM_021612899.2 mRNA downstream 287374 52949001 ~ 52967823 (-) True LOC110530094
XM_036985657.1 mRNA upstream 84773 53342603 ~ 53360245 (-) True nsun4
XM_021611263.2 mRNA upstream 204204 53462034 ~ 53478913 (-) False LOC110529122
XM_036985658.1 mRNA upstream 204204 53462034 ~ 53478913 (-) False LOC110529122
XM_021612937.2 mRNA upstream 242626 53500456 ~ 53569137 (-) False LOC110530111
XM_021612934.2 mRNA upstream 242626 53500456 ~ 53569139 (-) False LOC110530111
TU819491 other downstream 493746 52761039 ~ 52761451 (-) True G721275
TU817704 other downstream 1996178 51252355 ~ 51259019 (-) True LOC110530043
TU817090 other downstream 2315726 50936928 ~ 50939471 (-) True G719151
TU816422 other downstream 3365945 49866630 ~ 49889252 (-) False LOC110530011
TU816366 other downstream 3417501 49785674 ~ 49837696 (-) True G718489
TU820029 other upstream 205352 53463182 ~ 53463764 (-) False LOC110529122
TU820769 other upstream 240318 53498148 ~ 53499730 (-) True G722459
TU820950 other upstream 545613 53803443 ~ 53856065 (-) True G722602
TU821019 other upstream 668398 53926228 ~ 53927959 (-) True G722670
TU821119 other upstream 866549 54124379 ~ 54139341 (-) True G722761

Expression Profile


XM_021612923.2 Expression in all Baseline Samples

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The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying values. Range: 0 to 25.
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XM_021612923.2 Expression in each Bioproject

Bar chart with 21 bars.
XM_021612923.2 Expression in each Sample
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 600.
End of interactive chart.