RNA id: XM_021614230.2



Basic Information


Item Value
RNA id XM_021614230.2
length 1192
RNA type mRNA
GC content 0.45
exon number 2
gene id insl3
representative True

Chromosome Information


Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 53914820 ~ 53917617 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


ATGGATGCTAAGTGTCTTGTGTCTCTTGTGGTAGTTCTCATGGTTGGGGTGTATGGGACCCACGGGCAGGATGCCAGGGTGAAGCTGTGTGGGAGAGAGTTTATCCGTATGGTAGTCACATCATGTGGGAGCTCCAGACTGAGGCGCTCCACTCCGACGCTTGGACAACACCCCGTCAACCACCACAGGGTAATTCTGGATTGGCTGAACAGCAATCAGTTTTCCAACCTGAGGACTTCAGAGACTGGTGAAGATGTGGTGAAACAGCAAGATGACCAGGACTCCACAGAGAGTATGACAGAAGACCAGCAGACCCATCCAGGGTTTCCCAGCACACCGCAGGTCCAGGGGGACATGGAGCCTTCAACCGTCCCTCTGGGGTACACCGTGTCCTCCCGTACCCGCCGAGACGTGGGGCCTGCTGGGGTGTGCTGCCGATCCGGCTGCACCATGAGCGAGCTGGTCCAGTATTGCTAAGCTAAAGCTAATGGTAGGCTAATGCTAGGCAAGAATAACATTTCACAAGGAATTGTTGGTCAGCCATTGCTTGGTTAGCCATTGGAATGACGGAATAGGTTAAAATCAGGTTTATTTACATTCGTTGGGATGTTTGAAGGGCCATTTTGCAGTTGCCAAACCTTTGCATTAGAGCTAATGCAGTTAGTTCTACAGAAATGTTCATGTTGTTTTCTTGATATCATGAATTGTGTTTTAATCTAATCATTAGAGTATTGTTGTGGAAGGATTTGTGTAATGATAAAATCAAGACGGAAAGAATGTTGTCGAAAGAGGCTTTATTTATCATAATAATAATTTGTATTATTTATCACATTAATATTATACTTGATTCTCACCTGCACAATGAAGGACAACAATGAATGCCAAATGAGAGTTGTCAAGAAACCTTCCTGTTCATCTTGAAACACAATGTAATAAAGCTTTTGAAGATCATCGGTGAGTGGAGGTTACTTAACAGTTGTCTGTCTTTTGCAAACCATGCTTTTCTGACTTCAAACAGGGACAATAACCCCTCACTTCTCCACAATGTGTTGCGAGCTCCATGCCATGTTGAAAGTGCTTTGAAACCTATAGCGACATGTGCTATACAGTAGAAATGCAATCGATCCATGGTGTCATAGAGAAGGCATCACCCCCACAGAGCATCCCCCTCTAGTAAAGATCAAATTATCCG

Function


GO: NA

KEGG: NA

JBrowse2


Loading

Neighbor


RNA id RNA type direction distance location representative gene id
TU821007 lncRNA downstream 9358 53905148 ~ 53905462 (-) True G722659
TU820960 lncRNA downstream 85761 53828679 ~ 53829059 (-) True G722612
TU820885 lncRNA downstream 86339 53825024 ~ 53828481 (-) True LOC110530934
TU820815 lncRNA downstream 205453 53635849 ~ 53709367 (-) True LOC110530114
TU820840 lncRNA downstream 234825 53677925 ~ 53679995 (-) True G722523
TU821035 lncRNA upstream 26977 53944594 ~ 53944946 (-) True G722686
TU821043 lncRNA upstream 34578 53952195 ~ 53952400 (-) True G722694
TU821045 lncRNA upstream 36580 53954197 ~ 53954429 (-) True G722696
TU821055 lncRNA upstream 47559 53965176 ~ 53965407 (-) True G722699
TU821086 lncRNA upstream 115674 54033291 ~ 54034722 (-) True G722728
XM_036985677.1 mRNA downstream 34035 53825024 ~ 53880785 (-) False LOC110530934
XM_036985676.1 mRNA downstream 34037 53825024 ~ 53880783 (-) False LOC110530934
XM_036985672.1 mRNA downstream 34039 53818706 ~ 53880781 (-) False LOC110530934
XM_036985674.1 mRNA downstream 34041 53818706 ~ 53880779 (-) False LOC110530934
XM_036985675.1 mRNA downstream 34041 53818706 ~ 53880779 (-) False LOC110530934
XM_036985678.1 mRNA upstream 48380 53965997 ~ 53995304 (-) False LOC110530121
XM_036985679.1 mRNA upstream 48380 53965997 ~ 53995304 (-) False LOC110530121
XM_036985680.1 mRNA upstream 63792 53981409 ~ 53995304 (-) True LOC110530121
XM_021612952.2 mRNA upstream 83512 54001129 ~ 54003188 (-) True LOC110530123
XR_005053060.1 mRNA upstream 84817 54002434 ~ 54002567 (-) True LOC118965682
TU820950 other downstream 58755 53803443 ~ 53856065 (-) True G722602
TU820769 other downstream 415090 53498148 ~ 53499730 (-) True G722459
TU820029 other downstream 451056 53463182 ~ 53463764 (-) False LOC110529122
TU819491 other downstream 1153369 52761039 ~ 52761451 (-) True G721275
TU817704 other downstream 2655801 51252355 ~ 51259019 (-) True LOC110530043
TU821019 other upstream 8611 53926228 ~ 53927959 (-) True G722670
TU821119 other upstream 206762 54124379 ~ 54139341 (-) True G722761
TU821220 other upstream 333497 54251114 ~ 54251546 (-) True G722854
TU821231 other upstream 364068 54281685 ~ 54281978 (-) True G722864
TU822417 other upstream 1459664 55377281 ~ 55377776 (-) True G723955

Expression Profile


XM_021614230.2 Expression in all Baseline Samples

Bar chart with 20 bars.
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying values. Range: 0 to 0.3.
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XM_021614230.2 Expression in each Bioproject

Bar chart with 12 bars.
XM_021614230.2 Expression in each Sample
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 4.
End of interactive chart.