RNA id: XM_021612989.2


Basic Information

Item Value
RNA id XM_021612989.2
length 6196
RNA type mRNA
GC content 0.44
exon number 7
gene id LOC110530143
representative True

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 54526426 ~ 54556133 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ATATGACCTATCGCCTCTCACTGCAGCGGTGAACAGTTGAGAAACGAAAGCTAGGGGGACTGTTGCAAAAAAGCGATTGATAGAAGCAAGAATACATAAAACAATCTTCCTTTTGAATTTCTCTTCTTTTGTAGTATAACGCTCTACAAATTCAAATAAGGTCTGTTCAAAGAGGGGATTGCTCGAAACGAAGATAAGGGTTTGTGTAGCACGCAAGTTGACTAGCTGTCTAGCTAACGTTGCTACGGCAAAACTGAATCACCGTTCTAACTGTTACTGATTTGATAATCGACGTCGCTGATTTATCGACGTGCGCAAGTCGTCTTCGAAATCGGGGTGGTCGACCGTTCGCCATCCAACCCTGTCTTCCCTCTTGACGCAGTCCGAAGAGTGTACTGGTTCAGAGAATGCTAAAGAATGAGTCAAAGGGATACCTTGGTTCATTTGTTTGCCGGAGGgTGTGGGGGCACAGTGGGTGCTATTCTGACTTGTCCGCTGGAAGTAGTGAAGACCAGACTCCAGTCCTCTCATGTCACCTTTTACATCTCTGAGGTGCAGCTCACCACCGTTAACGGGGCCAGTGTGGCCCGCATGGCCCCCCCGGGACCCTTGCACTGCCTCAAGTTGATACTGGAAAAGGAGGGACCCCGCTCGCTTTTCAGAGGGCTAGGGCCCAACCTGGTGGGTGTGGCTCCTTCCAGAGCCATCTACTTTGCAGCTTACTCCACTGCCAAGGAGAAGCTGAACGGTGTGTTCGAGGCTGACTCCACGCAAGTTCACATGGTGTCTGCAGGCCTAGCAGGGTTCACTGCTATCACTGCAACCAATCCCATCTGGCTGATAAAGACCCGGTTGCAACTGGATGCCAGGAACCGTGGCGAGCGGCGCATGAATGCCTTCGAGTGCATGCGGCGGGTCTACCAGACGGAGGGCTGGCGGGGCTTCTACCGCGGTATGTCTGCCTCGTACGCCGGCATCTCCGAGACAGTCATCCACTTTGTCATCTACGAGAGCATCAAGCGCAAGCTGATGGAGTCCAAGGCCCAGGCCAGCATGGATCAGGACGAGGATGAGTCGGTGAAAGACGCCTCAGATTTTGTGGGTATGATGCTGGCAGCCGCCACGTCCAAGACCTGCGCCACCTCCATCGCCTACCCCCACGAGGTGATCCGCACCCGGCTACGAGAGGAGGGCAGCAAGTACCGCTCCTTCTTCCAGACATTGCTGACAGTACCTAAGGAGGAGGGCTACCGCGCCCTGTACCGCGGTCTCACCACCCATCTGGTCCGCCAAATCCCCAACACTGCTATAATGATGTCCACCTACGAGATGGTGGTCTACCTGCTCCAACGCTAGCCCCTCCCCTTCCGGTGTGGAGAGGAAGTAGGAAGTGACTGACTTGGTTGGGGATATCTAAGATGGAGACCAAAGGAAAACTGATACTGACCAGAAccaagaagaaagaagaagagctCCCCCACTAATTCCCCACCAACAACCCCAACCCCCCTAAGCCTACCCCACAAGGGGGCGCTATGGTCTGGGATGATAGAGAAAGGATGGggtgggaagaagagagagggacggcGAGAGACCGTTGGGTCAGTCCTTTACAGAGCCTGTCAAACAGTCTCAAAGATAGACGGAAATCATTTTGTGGCCTTAAAGAGtttagtctgtctctctgtagaatGAAACTAATCTGCTTTAGCCTGTACGGAGATGACAATCTGAAAGGGGAATGCAAGAAAACAATCGGTTAAAAAAACAGGTGTCATAACAACACTATGAAAATTATAGAAAATGTTTATTGCAAAATGTTCCACCAGTAGTTCTATTTGATTAGATTAGCACTTTTCCCCTAGGATTCAGCATACAAGCCAGGGATGGGCAATTGGCGGCCCTTGGATCAACTTCCCcaaactcagtcggggtctcaacttactgttgcaagttagaatagcagaatgcacaaggtgcaatttcaaaatgcatcagcagtttctcttaTGTCAGTCAATGACAGTCAATTAGCCCATCCATGTCAGCGAAAAATGTTTTTGAATAGTAAGTTAGTCGAGCGGCTGGTGGGCCCGCATTGATTTTgctacatgctgaccacactgcttgcgttgcaaaataaatgtacacatacatgttattcaatcattgcacccacactgctcgcgcgcgccaacgagcatctgcgttgccaatcgctaaaatagaagtcagttctatttgtgacgctcaacGCGGTGCAAgttctgcctctcccatctcctcattggtttatagaagcagatacccacgtgccatctccttattggttatacccacgtgggtgattgaaagatgaactgaggtcggtcggtcgtggtaatactatgaaagttagatgccaattgctatataaagtccaaagaaggaAAAAGCCTGGAAAGAGGaaagatgactagaaacaattctgttgaccgttttatgtgtggattaattgcgcatcaggtaaaataacaactcaacatttatatcccaggacaaattagctagcaacagcaagctagctagctagctaaattgccataaatgtttaatgctttttgacctgtccccaaattaatataattggttgagtttgttttgttatttcaacctgcgtgtcgcgATCACATTTGGTGtaggggggacaaaatcaattgcGCACTCGCACGTCCGGTCTGGGCATGGTGCTAGTCTCTCAGTTTCACTCAGATAACATTTCTCTACACACCATGGCCAAATGTGTAGAATGACAGGAAATGGGGTGTAAAACAGCTCATTTtcctctccgccccatggcaagaTGATTAGAATGGCATGAGATAATTTATAAAGTTGCAAAAAAATGTACTCTAAAACTTAGTCTCTGTCAATAGGGGGGCTGCTAAAATGTTATGCTCCCACCCCCCATAAAAGTTGTCCATCCCTGATGCAAGCTAATGTTTGAAACAAGCTGTGCATGCTTTGTTTCAACAGCTTGAACCCAAGCTTGGTGTTTAAGGAATGTCAAACAAACATTGGCGAGGGAAGTTGTTTTTAAATGACAATTTTACGTTTTTACAACCATCTCTAAGTGGTACGCTATAGAAGGATCCAGACACTTGTTTTTGGctatttcacttgtttttgagaaacttacccccGGCCAGTGTCACTTCCTCAATGTCGCtgaaaaaaaacatgaacaaatgcTCCAAAAACATCCAAATACGTATTTTTCTTTCCAAACTTTATCTGCAACGTTATATTCCACTTTGCGGCGACTCGAGCTCCTTCCCCTATCCAGCTGTTTCATTCTTTGGTAGCCTGCTGCTAGAATGGACGGATAAGTATGGCTTGAGTCACAATAAAATGGAATATAACGTTATAGATAATGTTCGGAATgacaatttcatgtgtacaacatctaaagacctgcgTCACTATACTGAGAGCATTTACATTTCTAAAATGACGTATTTGGGTGTTTATGGAgcattttgttcatgttttttcagAGCCCCCGTACTGCACAATATGAATGAGGAAGTGACTCACTGGTTAGCCTAGAtttctcaaaaacaagtgaaatagCACAAAAAGTGTCTATCTTTCTATAACATGCCATtgtaaaaacaaaatatatatatatagagagatggttcttaaaaataaaaaaaaagatttagGCACCGTTTCTTTCTCCCCCCCAGATCATTTAAGATCTCTAGCTAGCTATATGATAAGAGAATAGCAAGCAAACATTTCACGTACTGCAACGAGTTTGTCTTCAAGCATTCCCCTGAAGGCCAGAGTTACCCCTTATAGTCTGAAGCAATGCATATGGTGCACAAGACTAGGGATCGCCGCTGATCACAACACATGCCACAGACGCTTATCCAGTGTTTTGTATAATGGTATTGTTTCTCTGATACTAGTCATTGGGAGGGACATGGTTGTCTCTCGTGAGTGCACAGGATTTCTTTGATCTGGATAGGGTGCGAGTCTTTCCAACAGGTACCAACACTTAGCTGGTTAGAGGTCTGTCTACCGGTGTGACGCCGCTACTTGAAGACAATTTGTTAAATGTTGGAAGTCAGGAAGTGTCAATGTCATTCCATCATCTCTCCCAACCTTTCGTGTGAGATTTGGATGGTGACTGTGGGTCGATGTGCATTtgactctgtgtttgtgtgtgtgtgtgtgaggtgaaaGCGAACTGCCCTGATATCTACTCCAGAGGTAGTGAGTGCCCTCCACTAAAAGTTAATCATGTAGATTACTGCGGTTGGGAGCAAGGCAAAGCAGTGAGCCACACCAGCTGCTACACAGTAGCCCTTCCCTACCAGTGGCTCCCAACTGAAGTTTTATACACTTTTTTTTGTGGCCTTTTGGGTTATGTGCTTAACATTTTCTTGTGTGGACATTTTAATCTTGTATTATCAGAATAGTATTACTGTATATGCAAAAACGGTGTTTTGCTCAGCAGTTCCCATTGCAGATACTGTACAGTTCAGAGTACTTCATCTTGTGAAGGATATTCATGTGTATATAATACATATGCATATCAACTATTGTGTGTATTTTGCTTAGGTCCAtgtgttattatactgtagtttataGTTGCAAATTATTTGTTTGATTGCATTTGTGTACAATTGTAAGATGTTTGAACCTGTTGCAACATGGTGTGTTGACATTATTTTTCTTTTTGTTCAAGTTTTATATtatacaatttgtatttcattttacaTCATGCAAGCCTTGGTGCTGAAAGACAGTCTTTGATTTTATGTCAAAGTATTATTTTTcagaattatatatatttttgtgtgtgtgtaaattccCCTCAATCTGATTTTTACATTTGAATTTGCTCTCCAGCCATCTTCAAGCGATAGTATCCTGTATATCTAACTGTGTAGGCTCCTGCATCCTATCTGGTCTTTGTTACAAATTCTCAATCTGGTATTTAGTAGGGGAAAAAAAACAGTGATGGAGCGTAATATAAATGACTATTATATTAATGTCAATATTATGACAAGGTGATGTTTTGGCGTTCAAGTCACCCTGAACTATTTGAAACTGATTCAGGCTCTGGATTCATGACTGAAGACCATCCGACAGTGCAGAGGCTACATTGGATTATGGTGCGCATCGTTTAGATGGTTGTAAATATCCTTCTGTACATTGAAGTTTTTACCCGAGGCCTCTGCCTATGGTAGTTGTTCATTTTGTCAGGCCAATTTCAAGTATTTTTTCCTATCCACTGGCATACTGTATAGAACTGTACTGTGGAGTCCTTTTCCCACAGACTATAGCCTAGCTGTTTTTGTTACTATCATTGCCCTGACAGTCATACTGTGACTTGAATAACTAGTATACAGTACATAACTGATGTATTTTGTAGTGGAGCGTAGACTTGCATATAATGTGATCTGTTAGACTTTAGTGACTGCCCCGTGCTGCTATCTAAGAGATGGGGCTCAATGCCACTACGCTTCCACTCCACTCAAGACGGCTCTGTTGTATTGAAAACAAAACACTACACAGACCAGCAGGTCTGCAGTTTCATGACTTGTCCCCACATAGTCTTGGGTTAGTAGGTTGGCAATACCTCAACCATGCCACTAAAGACTAATCCATTTAACACTGTGGATGCCATCATGGTGGGTCCCATATGGCTTCTCTATTGGCAAAAACCGGAGTCTGCCAGGGAGTATACAGATTTTATACAGCCAAGGTACAGTTTACACAGTTTGGAAAAGTAGGCGTACATTTCTATGGTACGGTACTGGAGAACTAGTAACTCAAGAATCTACTTCTCAGCTCTCTATCAATGTTATTTCGTAGTCAATAGGGGTCCAGGTTGACATGACTACCATGCTGCCCAATTGATATCTGGGCTAGAGAAATATGCTTACTCATTCATGTCCATGTTTTTGCCTGACTCAATACTTCAAGGAGAAATGTGATTACTATATGTAAAACATTTCAGTGAACTGATTTTTTTGGAATGCTGTTTTGTTGATTGTTTTCCCTCTTAAATCAGCCAGTACCCCCCTCCTATTTGTTTGGTTTAAGCTGGTGAAATTAATGTGGCCTATTCTTTGCCATCTATGTATCATCATACCTCCTTTTTGTACAAAAGTCAATAAAAACCAGATTGCAACTCCCA

Function

GO:

id name namespace
GO:0055085 transmembrane transport biological_process
GO:0005743 mitochondrial inner membrane cellular_component
GO:0016021 integral component of membrane cellular_component

KEGG:

id description
K15116 SLC25A33_36, RIM2; solute carrier family 25, member 33/36

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU820667 lncRNA upstream 9831 54516280 ~ 54516595 (+) True G722370
TU820666 lncRNA upstream 11882 54514328 ~ 54514544 (+) True G722369
TU820621 lncRNA upstream 18981 54505382 ~ 54507445 (+) True G722334
TU820653 lncRNA upstream 46881 54475687 ~ 54479545 (+) False G722358
TU820652 lncRNA upstream 46881 54475942 ~ 54479545 (+) True G722358
TU821483 lncRNA downstream 115227 54671360 ~ 54671582 (+) True G723092
TU821507 lncRNA downstream 138919 54695052 ~ 54695285 (+) True G723115
TU821504 lncRNA downstream 142730 54698863 ~ 54701655 (+) True G723112
TU821604 lncRNA downstream 281635 54837768 ~ 54867601 (+) True G723210
TU821690 lncRNA downstream 445836 55001969 ~ 55002233 (+) True G723294
XM_021611238.2 mRNA upstream 28459 54488934 ~ 54497967 (+) False rb11a
NM_001165085.1 mRNA upstream 28461 54488987 ~ 54497965 (+) True rb11a
XM_021612979.2 mRNA upstream 84348 54407457 ~ 54442078 (+) False LOC110530137
XM_021612980.2 mRNA upstream 84348 54407457 ~ 54442078 (+) False LOC110530137
XM_036985692.1 mRNA upstream 84348 54407457 ~ 54442078 (+) True LOC110530137
XM_036985697.1 mRNA downstream 1820 54557953 ~ 54670115 (+) False LOC118965528
XM_036985698.1 mRNA downstream 1820 54557953 ~ 54670115 (+) False LOC118965528
XM_036985699.1 mRNA downstream 56470 54612603 ~ 54670115 (+) False LOC118965528
XM_021612993.2 mRNA downstream 443729 54999862 ~ 55003924 (+) False LOC110530145
XM_036985701.1 mRNA downstream 443729 54999862 ~ 55003924 (+) True LOC110530145
TU820345 other upstream 598467 53926217 ~ 53927959 (+) True rps28
TU820195 other upstream 854567 53670396 ~ 53671859 (+) False mrpl34
TU820196 other upstream 854567 53670396 ~ 53671859 (+) True mrpl34
TU819925 other upstream 1148721 53377232 ~ 53377705 (+) False G721689
TU815927 other upstream 3885260 50636696 ~ 50641166 (+) True LOC110530024
TU820675 other downstream 68041 54624174 ~ 54670114 (+) True LOC118965528
TU821992 other downstream 577897 55134030 ~ 55136631 (+) True LOC110530153
TU822189 other downstream 903563 55459696 ~ 55460120 (+) True LOC110530939
TU822550 other downstream 1154107 55710240 ~ 55718237 (+) False si:ch211-267e7.3
TU824284 other downstream 2427437 56983570 ~ 56984285 (+) True G725573

Expression Profile