RNA id: XM_036985706.1



Basic Information


Item Value
RNA id XM_036985706.1
length 2520
RNA type mRNA
GC content 0.48
exon number 10
gene id LOC110530149
representative False

Chromosome Information


Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 55074480 ~ 55084517 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


ACGTGTCCCGGTTGTTGTAGTTCCTGTGGAGTAAACTGTCATTCCGAGGACTGCATTAGTTAGCTAGAAATACTCTGTTGATAATCCATCTGTTAGTCTACTCCCTAACCAATGCGCGTCCTCTTCCTATCGAGCTGGTGGCACAGTTCGAGACATTGGACTAACATTACCTGAGTGTTGGGTGCACTGTtcttgctagctagttaatgAATTTAGCGTTATTAACCAACAGTTAGCAAGCAACAGAGAACAAACCAACTTGGCAGTAACCACAGAAGGCCCTTGAATGGAGGCCCACAGCTCAAGCCGGTCAAGCCTgtccaggaagaggaggagagatggatccAAGGGAGAATCCGAGGAGGTAGAGCGGCCAGGGAAAGTCCCAAAATCCACCGTGGGTTTAAAAGATCCCGCCTCCTTTGCTGATGAGCTGGAGTCGGCTGAGGACACTCCATACCTGCGAGTCAGCATGGAGGAGGCCAAGAGGGGAACTCCATTTCATAGGCCAGTGCGGGTCTATGCAGATGGCATCTTTGATGTGTTCCACTCAGGCCACGCCCGGGCACTCATGCAGGCCAAGGGCCTCTTCCCTAACACGTACCTCATTGTGGGCGTGTGTAGTGACGACCTGACGCACAAGTTCAAGGGGTTCACAGTGATGAACGAGGATGAGCGCTACGATGCAGTCAGCCACTGCCGCTACGTGGACGAGGTCGTCAGGAACGCGCCCTGGACGCTAACGCCCGAATTCCTCACCAAGCACCGAATCGACTTTGTTGCCCATGACGACATCCCATATACATCAGCAGGCCAGGATGACGTTTACAAGCACATCAAGGAGGCGGGCATGTTTGCGCCCACCCAGCGGACGGAGGGCATCTCCACCTCGGACATCATCACACGCATCGTCCGTGACTATGACGTGTACGTGAGACGCAACCTGCAACGCGGCTACACTGCAAAAGAGCTCAACGTCAGCTTCATAAATGAGAAGAAGTACCACCTGCAGGAGCGTGTGGACAAGGTGAAGAGGAAGGTGCGTGACGTGGAGGAGAAGAGTAAAGAGTTTGTGCAGAAGGTGGAGAACAAGAGCATCGACCTCATTCAGAGGTGGGAGGAGAAGTCCCGGGAGTTCATCGGCAACTTCCTGCAGATGTTCGGCCCCGAGGGAGCACTGaAGCACATGTTGAAGGAGGGCAGGGGCCGGATGCTGCAGGCCATCAGCCCAAGGCAGAGTCCCAGCAGCAGTCCCACCCGTGAGCGCTCTCCCTCCCCCGTCTTCCGCATGCCCTTCTTAAACAAGGCCTTGGCCTCACCCCACCACAGTGCTGCACGGGGATACACCGTCAGTGAGGATGATGACGAGTCTGACGAAGGTTAGGGCTCCCATTTTACGCGTTTGTTAATCCTGCTCTTCGGTCCATCGACAGTATCAACGTTCAAGCCCCTCCAACCAATCATCAGTATAGCGTTGTCCCTCACTTCATTTTTTCACTCCTTTTTAAATTGCTGGTGTCCATTTTAATTTGTACTGTACCACATCAGTCAGAGGGGGGTTAATGCAGAATAATTTTTTGACAGCCGATGTTGCATTTCTCACCGATAGGAACATTTATAGATATTATTTTGATGCACGCTTCCTACTCAGGATGTTATAACCTTAGTGGGTAGATTTTTAGTTACCCATGAGTTCAGTGGGAAATTCAGTTGTCTTCGGTGCACTTTTGCATTCCTCCACAGATTATCTGAATATAGTAACCATCAGTCCCTTGAGGATTCCCCCTCGGAGTGTTTGTTTGCTTCTGTGAGTGTGTAAACTGCTAGTATGTGTAGGCATCTCGATGTCCTCCATCCATGGACTCAGCTTGGCCTTTTTGCACattataataatactaatagTTGGTCTCACTCGAGGTCAGTCGTTGGACAGAGGTTTTCAAAGCATAGTGTCCAGCATTTAACTAAAGAACTGGATCTTGTTCAGTAGGGCTCAAGAGAACTTGTTTTCAGGAGGTTCTAGCTGAACCCAAACACTTGTGTGCAATAACGAGACCTCGTTTTAAAAATGACTACATACGTAATACAATTTTATCCCTGTTACATATCTCCCTCCTGTTGTTGGGATCCCTTGATTTTGGCTGTTGACCCAACCCTTGCTAGTCTTTGTGGCAGCAAAGCAGGTGGTTTTATTTCCTATATAATTATTTTAAGCATATTATCGTAACCATGTTGGATTGTCTATACAGTATAAGGGATGATATAATCCATTAAAATACTGCTTCTCATTAGGGCatgtctatatctctctctctctctctcttggtagCAAGAGTTTTCTGATATGTAAGACGCCAGTACTAACCTTTCACTATCTGTCAGATACAAAATGTACCTGGCTTTAAGTACAttgttttaaacattttattgTTTGGGTTGAGTTTGTTTAGTTCCTGAATGTGCAGGCATGAGATCCCAGGGAACATGTCaatggaataaataaataaacttcaACCATAA

Function


GO: NA

KEGG: NA

JBrowse2


Loading

Neighbor


RNA id RNA type direction distance location representative gene id
TU822220 lncRNA downstream 10082 55064076 ~ 55064398 (-) True G723776
TU821937 lncRNA downstream 45111 55029122 ~ 55029369 (-) True G723524
TU821934 lncRNA downstream 46759 55027077 ~ 55027721 (-) True G723521
TU821932 lncRNA downstream 48755 55025496 ~ 55025725 (-) True G723519
TU821928 lncRNA downstream 49277 55024803 ~ 55025203 (-) True G723515
TU822235 lncRNA upstream 1609 55085974 ~ 55089678 (-) True LOC110530150
TU822227 lncRNA upstream 18602 55102967 ~ 55106032 (-) True G723780
TU822248 lncRNA upstream 22278 55106643 ~ 55106886 (-) True G723797
TU822249 lncRNA upstream 23099 55107464 ~ 55107982 (-) True G723798
TU822252 lncRNA upstream 32457 55116822 ~ 55117047 (-) True G723801
XM_021612991.2 mRNA downstream 99334 54698833 ~ 54975146 (-) False LOC110530144
XM_021612992.2 mRNA downstream 99334 54701490 ~ 54975146 (-) True LOC110530144
XM_036985700.1 mRNA downstream 297419 54698833 ~ 54777061 (-) False LOC110530144
XM_021612988.2 mRNA downstream 566992 54498363 ~ 54507488 (-) False LOC110530142
XM_021613000.2 mRNA upstream 1603 55085968 ~ 55089720 (-) False LOC110530150
XM_036985712.1 mRNA upstream 70313 55154678 ~ 55162613 (-) False LOC110530155
XM_021613003.2 mRNA upstream 70313 55154678 ~ 55180780 (-) True LOC110530155
XM_021613007.2 mRNA upstream 119318 55203683 ~ 55209485 (-) False LOC110530157
XM_036985714.1 mRNA upstream 119318 55203683 ~ 55209504 (-) False LOC110530157
TU821231 other downstream 792502 54281685 ~ 54281978 (-) True G722864
TU821220 other downstream 822934 54251114 ~ 54251546 (-) True G722854
TU821119 other downstream 935139 54124379 ~ 54139341 (-) True G722761
TU821019 other downstream 1146521 53926228 ~ 53927959 (-) True G722670
TU820950 other downstream 1218415 53803443 ~ 53856065 (-) True G722602
TU822417 other upstream 292916 55377281 ~ 55377776 (-) True G723955
TU822429 other upstream 312259 55396624 ~ 55396885 (-) True G723966
TU822777 other upstream 551173 55635538 ~ 55646014 (-) True G724287
TU822909 other upstream 701152 55785517 ~ 55791485 (-) True G724400
TU823541 other upstream 1035838 56120203 ~ 56128288 (-) False G724943

Expression Profile


XM_036985706.1 Expression in all Baseline Samples

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The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying values. Range: 0 to 20.
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XM_036985706.1 Expression in each Bioproject

Bar chart with 14 bars.
XM_036985706.1 Expression in each Sample
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 80.
End of interactive chart.