RNA id: XM_021613016.2



Basic Information


Item Value
RNA id XM_021613016.2
length 798
RNA type mRNA
GC content 0.42
exon number 4
gene id LOC110530163
representative False

Chromosome Information


Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 55335612 ~ 55337598 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


AAGAGGATGTTGTGCGTAGTCAGGATCCAGTGTATCAGCATGGAGAAGGCTGTGTGGCTGCTGTGTGTCCTGTTTCTGCAGGTCTGTCTGCTCTCCACCACAGCCCTCCCTGGACAAGACAGACGGACAGCAGCTTTTCAAACCAACCAAGCCATGGGAGGCTCTTCCCCATTCCTCCCAGGACCTCCACGTCAGAGTTCCAGGACTAAGAGGCATGAGAGTACCAAGGGCAGACGCAAAAGACCCTATCGTCCTGGAGCCTTGGCTGCATTTTCCGAACTAGCTGTTCCTCCTTACAGATCCTCAGCATAGAAGAAGACGGTACTGAGACACAGGACAGGCCATGGAGAGAAACCCACCGCATGAAACTTGCTTTATTTTGGGTCATAAGTCAAATAAGCATGAAAAAAAACATGTGGTATCGACAGTAAAACACTCAGTCCTGCTTTATTTGAAGTGCATCTTGAGAaagcttttaaaaaaaacatataggTTTCATAAGCACTGCATATAAAGGTCACAAATAATCTGTAACTCATTTCATGCTCTATAAAATATTTCCAAATGTGATTTCTAAATGTGAACAAATAAATGCATggttatgtcacacagttatgccacattaTGAATCTTTATAGAGCAAGATATAAGGTTATAGATGATATGTGAAGCATCTATGTGGGGCTTTATGAAGCCTTCATAAGATGCATTTCAAATAAAGCGGGACTAAACTTTCATTTACTTTTTTTTCAGTTTTCCAGCAATGGAATTATAAATAAAACTCTACCGCGCTATGGA

Function


GO: NA

KEGG: NA

JBrowse2


Loading

Neighbor


RNA id RNA type direction distance location representative gene id
TU822347 lncRNA downstream 61709 55257662 ~ 55273903 (-) True G723891
TU822310 lncRNA downstream 114657 55218096 ~ 55220955 (-) True LOC110530159
TU822297 lncRNA downstream 148732 55186561 ~ 55186880 (-) True G723844
TU822296 lncRNA downstream 149485 55185627 ~ 55186127 (-) True G723843
TU822267 lncRNA downstream 194778 55139311 ~ 55140834 (-) True G723814
TU822418 lncRNA upstream 40503 55378090 ~ 55378339 (-) True G723956
TU822430 lncRNA upstream 61462 55399049 ~ 55399513 (-) True G723967
TU822432 lncRNA upstream 65025 55402612 ~ 55403050 (-) True G723969
TU822433 lncRNA upstream 66957 55404544 ~ 55404942 (-) True G723970
TU822434 lncRNA upstream 67720 55405307 ~ 55405879 (-) True G723971
XM_021613011.2 mRNA downstream 22008 55304680 ~ 55313604 (-) True LOC110530161
XR_005052911.1 mRNA downstream 112284 55217971 ~ 55223328 (-) False LOC110530159
XR_005052912.1 mRNA downstream 120879 55211750 ~ 55214733 (-) True LOC118965529
XM_036985715.1 mRNA downstream 124509 55203683 ~ 55211103 (-) True LOC110530157
XM_021613006.2 mRNA downstream 124770 55203683 ~ 55210842 (-) False LOC110530157
XM_036985719.1 mRNA upstream 86079 55423666 ~ 55456049 (-) False si:ch211-106h4.4
XM_036985720.1 mRNA upstream 90137 55427724 ~ 55456052 (-) True si:ch211-106h4.4
XM_036985721.1 mRNA upstream 123609 55461196 ~ 55468070 (-) True LOC110530166
XM_021613024.2 mRNA upstream 196029 55533616 ~ 55544134 (-) False odr4
XM_021613026.2 mRNA upstream 196033 55533620 ~ 55543988 (-) False odr4
TU821231 other downstream 1053634 54281685 ~ 54281978 (-) True G722864
TU821220 other downstream 1084066 54251114 ~ 54251546 (-) True G722854
TU821119 other downstream 1196271 54124379 ~ 54139341 (-) True G722761
TU821019 other downstream 1407653 53926228 ~ 53927959 (-) True G722670
TU820950 other downstream 1479547 53803443 ~ 53856065 (-) True G722602
TU822417 other upstream 39694 55377281 ~ 55377776 (-) True G723955
TU822429 other upstream 59037 55396624 ~ 55396885 (-) True G723966
TU822777 other upstream 297951 55635538 ~ 55646014 (-) True G724287
TU822909 other upstream 447930 55785517 ~ 55791485 (-) True G724400
TU823541 other upstream 782616 56120203 ~ 56128288 (-) False G724943

Expression Profile


XM_021613016.2 Expression in all Baseline Samples

Bar chart with 20 bars.
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying values. Range: 0 to 40.
End of interactive chart.

XM_021613016.2 Expression in each Bioproject

Bar chart with 18 bars.
XM_021613016.2 Expression in each Sample
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 600.
End of interactive chart.