RNA id: XM_021613026.2



Basic Information


Item Value
RNA id XM_021613026.2
length 2230
RNA type mRNA
GC content 0.47
exon number 14
gene id odr4
representative False

Chromosome Information


Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 55533616 ~ 55544134 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


ATTTGAAGATTCACTCATAACACAAAACGGTGCGATTGTCAAACCTCTAGGATTTGGTTTTGTTTGAAAGCCAAGTTATCCATCCACTGAGCCAGACTGAGCTAACTaTCAGAATGGGCAGAGGCTACATAGTGGAGGATGTGGTGGAGAAATATCTGTCCAATCTCAGTGTACCAGGTGCATCTTGTGTCACAGGACTTCTCATTGGCCAGAGTTCATCCCAGAGAGACTTTGTGGTGCTGGCTGTGAGGACACCTCAGAAGGACACAGAGGGACAGGGGTCTCCGTCAGTCAGCAGGGGAGCTGGGAACTCACTGGAACGCCTGGACGTGGAGTGGGTCACCGAGCATGCCAGACAGGTCTCCCGGATGTTACCGGGAGGTATGTCAGTTATTGGTGTGTTTCTTGTCACCCCACCTGAGCTGTCGAAAGAGGCTCAAAATACATTGAGACGGTTGATCTTTGCGGTGGACAAGCATATATCCAAGGGACGGCTTTGGAGTCTAACAGAGGAGGACGTAACAGAGAAGGTCACACTTCACATCTGCTCCAAAACCAGGAAAGTCGTTTGCAGAACATATGATGTTCGAGATCCCAAGAGTTCTGCCAAGCCTGCTGATTGGAAGTACCAGTCGGGGGTGTGTACTTCCTGGCCATTGTTGACATGCTCAGTGGGACTGAACCTGGTGTTCCCTGTGTTAGAGATGCATGTCTTACCACAGGACATGGAAAAGTGTATGAAGGAGGGACTTCAAACGTGGGCGAAGCAGATTGAAGATGGGCTTTGCCTCATCAATGGCGACGCGATGCCTGGCGAGGTGGAGCTACTGGGGGGGCAGAAAAAGAATGCAAAGGCTGTTCAGCAGACGTTTCGAGCCCAGATCCTCATCCCGATGGCGGAACCCCAATCAGAGCGGAGATTGACGGCGTCTGTGAAGGTGTGCAGTGGGTCTCTCACCCTGAAGGGAATGGTGCAGTGCAGGGCCTACCTCCACAGCAACAAACCCAGAGCCAAGCACGCTACAGAGGTCATCAAGAGAGATGTCATCAACACGGTCTCTAGCAGAGTGGAGATGTTCCTGGAAGATCTTTTAATGGAGGGAGAGGACAAAGGGTCAGTCGGTGTACAGCAGGTGCTCCCTCGCAGAGTGTTTGCCCCCGTGCCCGGaatgagcctgtgtgtgtgtgactacatgTTCCCTGACGAGTGTGTGTCCGATGTGAGTGACCGTCTCAAAGAGATGCTGGACTGGGAGACGCCCGAGGACAGCATAGACACCTCCCAGGAGGCCGTCCCAGAAGCTCCTACGATTGACCTAAAGAACACGGTTGTTCAGAAGAACCTGAAGGCTAAATCTACCCTTGACGCTCGTCCTAAGACACCCTCTGAAGATCCCACTGAAGCCCACAAAAGCCACAAAACATATTACGCTGGTGTTGCCATGGCAGCCGCAATCGCTCTCCTAGCAACAGGCACCTCGCTGATCTACCTGAGCGACTAACGGTGGAGGCAcaggacacagacacaccacGAGAGCTGTTGTTATGCTCAGTGACTTAATCTCTTGATTAAATAGATTTTCATGAAATTGAGTTGACATGGTTATTATAAAAGTATATGCAAGCTGTACGTTTGGTATTGATaattcaacattttatttttcatatGAATTGTAAAGCATAATTGTgtagagagaaaaataaatgaatacagtTCGTTTTGATTTATTTTGTTTCAGTTGTAAAAAGGTTTCACAAAGAAACGTGTGTACAGCGTATGATTTCATGTCGTTCAGAAAGTATGTCTAATGCCATATATTCAAAATTCCCCTCCCATATTATGGGGAAAATGGACCCGCTTTTTGTTGTTCAGTTCATTCAGTCATCAACAGATATTCTGATGTGTGCCAATCATAAACTTTGGGCTCTGTCCTCACATATTGCCTCAGGCCAACCTTAATCGAACTTCTCCTCAACCACAGTGTTGGCACAGCGAACAAAGGACATGTCAGAAGTGCTTAAGAGTGTCTGGATTCAACAtcgttttttttttgcaatgacTTAGGCCTACGGTATGGTCTTGTATGGTTATGCTTGGTATGATGGGCATATTCTATGCTTTGATCCTCCCAAAGGATCGTTCATGCTTGTCCTTAATATCACAAATACTGTATTTTATGTATTCATCTATGACGGAATTGAGCAGAATAAAGAAGTCCGTTCAAAGTAA

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU822513 lncRNA downstream 23056 55510338 ~ 55510564 (-) True G724042
TU822491 lncRNA downstream 33760 55499466 ~ 55499860 (-) True G724020
TU822449 lncRNA downstream 63612 55423054 ~ 55470008 (-) True G723979
TU822434 lncRNA downstream 127741 55405307 ~ 55405879 (-) True G723971
TU822433 lncRNA downstream 128678 55404544 ~ 55404942 (-) True G723970
TU822733 lncRNA upstream 1746 55545734 ~ 55545995 (-) True G724245
TU822734 lncRNA upstream 2859 55546847 ~ 55547117 (-) True G724246
TU822754 lncRNA upstream 31071 55575059 ~ 55575687 (-) True G724264
TU822762 lncRNA upstream 44500 55588488 ~ 55589616 (-) True G724272
TU822856 lncRNA upstream 173876 55717864 ~ 55718713 (-) True G724366
XM_036985721.1 mRNA downstream 65550 55461196 ~ 55468070 (-) True LOC110530166
XM_036985720.1 mRNA downstream 77568 55427724 ~ 55456052 (-) True si:ch211-106h4.4
XM_036985719.1 mRNA downstream 77571 55423666 ~ 55456049 (-) False si:ch211-106h4.4
XM_021613014.2 mRNA downstream 196022 55335612 ~ 55337598 (-) True LOC110530163
XM_021613016.2 mRNA downstream 196033 55335612 ~ 55337587 (-) False LOC110530163
XM_036986877.1 mRNA upstream 11890 55555878 ~ 55564099 (-) True LOC118965626
XM_021613029.2 mRNA upstream 23855 55567843 ~ 55614934 (-) False LOC110530170
XM_021613030.2 mRNA upstream 23855 55567843 ~ 55614934 (-) True LOC110530170
XM_036985723.1 mRNA upstream 139637 55683625 ~ 55688982 (-) False LOC110530171
XM_036985724.1 mRNA upstream 139637 55683625 ~ 55688982 (-) False LOC110530171
TU822429 other downstream 136735 55396624 ~ 55396885 (-) True G723966
TU822417 other downstream 155844 55377281 ~ 55377776 (-) True G723955
TU821231 other downstream 1251642 54281685 ~ 54281978 (-) True G722864
TU821220 other downstream 1282074 54251114 ~ 54251546 (-) True G722854
TU821119 other downstream 1394279 54124379 ~ 54139341 (-) True G722761
TU822777 other upstream 91550 55635538 ~ 55646014 (-) True G724287
TU822909 other upstream 241529 55785517 ~ 55791485 (-) True G724400
TU823541 other upstream 576215 56120203 ~ 56128288 (-) False G724943
TU823623 other upstream 675528 56219516 ~ 56232939 (-) True G725007
TU823714 other upstream 830665 56374653 ~ 56386516 (-) False LOC110530186

Expression Profile


XM_021613026.2 Expression in all Baseline Samples

Bar chart with 20 bars.
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying values. Range: 0 to 3.
End of interactive chart.

XM_021613026.2 Expression in each Bioproject

Bar chart with 12 bars.
XM_021613026.2 Expression in each Sample
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 70.
End of interactive chart.