RNA id: XM_036985727.1


Basic Information

Item Value
RNA id XM_036985727.1
length 2317
RNA type mRNA
GC content 0.52
exon number 16
gene id LOC110530172
representative False

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 55631924 ~ 55682922 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ATTTTAAAGTAGCCAACTGGGTGGGGATTTCTATGGGTTGGGAGCAAATAGCCAATAAAGAAGAAAATTAACTACTTTAAAATTGAGATAGCCCATGTTGTCACATATGCTAAACTGGCAGTGATACAAAGATGAgtgctctatctatctctatggtggAAAGTCGACGCCAAACAAGGAAATGTGACCACGTATTCTTTGTTGTGACGATTTTGAGAATTCGTAACATTAGCGAAATGGCAGAGTTACGGTTGGATTTAGACAGTAATTTACAGTATGGcccttttggcagcgatttaGCGGATATTTGCATTGACCAGGATGGTGAATGGGACATCAACTTGTTGGAAGAACTTGAGAACCTAAGTGATGCagaggaactccttcaagaattcGAGTTCACACCGCGTGATGAAACAGCACTGAAAGAGGTGAATGACATTAATCTGTTACAATGGAGATCCTTCACCAGTGGAGATACTGATGCTTGCTgcacagGTGTTGGAGTTCCTGGGTCCTCCCTATCACCTGGATCAGCACTCAGTGATACCTCCTCACTGTCACCGCTGTCTCTGAAACAGGAGGATGCCGTGTCTGTGCAGCCTTTGCCGACAATGCTCACTCCTGGAAAGAAAATGCACAAGTGGGTCAGCCAATCTCCCAGAGCCAAGCCTACCAAGCGACCTGCCCACCCACCCCAGAGGGTGTCAATCCAGCCCAAACCgcccccctctgtccctctaacaCAGCCTGTGGCCCCTTTTCTCAAAACCAGGACCATTGTCATCCAGCCCGTTAGCCTACAGACTGTGGTCTCAGTGGTCAAGGCACCACCGCCTGTGACCGTCCATGCTACTGCCCCCTCTACTGCAGTTCACACAATGCATCTCAAGCCGAAACAGGTGATTGGACCCCAGATCACTTCCCCAACCCCTGCCTTCCTCGCTGTCACCAACCAGGTGGTCACCATGCCAACTGTCCCCAATGTTACCATGGGGACCACTGCCCTCACTGGCCATGCCCATCCCATGACGGTGACCTATCACAGCACAGCAGTGAACACTGAGGCGTGTGTGGTGCGGCGGCAGCAGAGGATGGTGAAGAACCGTGACTCGGCCACGCTGTCCAGGCTGAGGAGGAAAGAGGCCCAGCAGGCTCTGGAGGCCCGTCTCAGGGGGGCACTGTGTGAGAACCAGAGGCTGCTCCGGGAGAACGGATCCCTTAGGACCCAGCTGGACGGACTTCTCACGGAGAACACTGTTCTGAAGGTGACGGCTCCAAAGAGACGGGCTGTGTGCCTTATGGTCGTCCTGGTCTTCTTCGTGCTCAACACGGGTCCCAtaagTGTGTGGGAGTCAGAGACCAGCAACTCCAGCCTGTCCACTGGGAAGCCACAAAGCAGCCGACATCTGCTCAGCTTCTCCCCCGACCAACAACAAAGGCGAGGGGAGGAGACACCAGACCCCCAGTCCCCACTGGAGCCCCTGGATGCCCAGTACCCACAATCCCACCAATCCCAGGACAGGTGGGAGGATTATACCCCAGAGGAGATGGCTCTAGCTGTGGTCAAGAAGGAGTCTCTCCTGTTTGGGTCACCCTCCTCGCCCCCCTGCCAACCCCACTCTCCTGTCTCCAGGTCCAAGTCTCTCCGTCTGACTCAGAACTTGCGAGGCTGGGTTCATCGACACGAAGAGGAGAGAAGCAAGTCCACACGCTCTACCACTGATCAGTCCAGACATACAACAACAGATCAGCACACAACCAAAACTGTCCTGAAGTCACCTGAGGAAAAACCCCAGACGAACCAGTCCAGTAACTCGGTTGTAACAGTCCGCTACTCTGAtaggcCAGGGAGTGAGGTTCAGGTGTACTACTCACGCCATCAAAGCTACAGGGACTTCTTTGATGAGTTAAATCGACGAGGCGACACTTTCTACGTGGTGTCCTTTCGCAGGgaTCACCTTCTGCTCCCTGCAACCAACCACAGCAAGGGGAGCAGGCCAAAGATGTCCTTGGTGTTACCAGCTATTAATGTGAATGACTCTGTCATCAAGGACGACACCTTTGAGGTGATGATGCAGATTGACTGTGAGGTCATGGACACCAAGATCCTCCACATCAAAACCTCCAGCATCCCAGAGATCCTACGCGCCAACACCACTGACTTCCAATCCACCCATGCCAACGGAAAGACATCAGCATCGGTTGGTGTTCTATCAGACTCTGCCTGAAATTGGCCTTACCTAAAAGGCCTGCCAATCTAAAAACCTATCATTTTACCAACCTTTTGGTGTATTTAATAAACTGTGACAAAAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU822619 lncRNA upstream 6075 55625631 ~ 55625854 (+) True G724140
TU822612 lncRNA upstream 14650 55617066 ~ 55617279 (+) True G724133
TU822575 lncRNA upstream 17040 55587567 ~ 55614889 (+) True G724096
TU822567 lncRNA upstream 75636 55554664 ~ 55556293 (+) True LOC110530940
TU822528 lncRNA upstream 111630 55519976 ~ 55520299 (+) True G724057
TU822546 lncRNA downstream 40567 55723489 ~ 55724256 (+) True si:ch211-267e7.3
TU822673 lncRNA downstream 55520 55738442 ~ 55739151 (+) True G724191
TU822674 lncRNA downstream 56817 55739739 ~ 55740547 (+) True G724192
TU822720 lncRNA downstream 132464 55815386 ~ 55819692 (+) True G724237
TU822951 lncRNA downstream 163479 55846401 ~ 55846617 (+) True G724428
XM_036986878.1 mRNA upstream 1715 55625971 ~ 55630214 (+) True LOC110530941
XM_036986876.1 mRNA upstream 77135 55549889 ~ 55554794 (+) False LOC110530940
XR_005052913.1 mRNA upstream 81643 55548019 ~ 55550286 (+) False LOC118965530
XR_005052914.1 mRNA upstream 81643 55548019 ~ 55550286 (+) True LOC118965530
XM_036985722.1 mRNA upstream 81789 55548019 ~ 55550140 (+) False LOC118965530
XM_036985737.1 mRNA downstream 27234 55710156 ~ 55721805 (+) False si:ch211-267e7.3
XM_036985735.1 mRNA downstream 27240 55710162 ~ 55724271 (+) False si:ch211-267e7.3
XM_036985736.1 mRNA downstream 27240 55710162 ~ 55724271 (+) False si:ch211-267e7.3
XM_021613045.2 mRNA downstream 103559 55786481 ~ 55800644 (+) True frrs1a
XM_036985741.1 mRNA downstream 232983 55915905 ~ 55950754 (+) False LOC110530181
TU822189 other upstream 171809 55459696 ~ 55460120 (+) True LOC110530939
TU821992 other upstream 495298 55134030 ~ 55136631 (+) True LOC110530153
TU820675 other upstream 961815 54624174 ~ 54670114 (+) True LOC118965528
TU820345 other upstream 1703970 53926217 ~ 53927959 (+) True rps28
TU820196 other upstream 1960070 53670396 ~ 53671859 (+) True mrpl34
TU822550 other downstream 27318 55710240 ~ 55718237 (+) False si:ch211-267e7.3
TU824284 other downstream 1300648 56983570 ~ 56984285 (+) True G725573
TU824563 other downstream 1785950 57468872 ~ 57477729 (+) True LOC110530213
TU824624 other downstream 1830684 57513606 ~ 57515394 (+) False G725878
TU824625 other downstream 1830684 57513606 ~ 57515394 (+) True G725878

Expression Profile