RNA id: XM_021613045.2


Basic Information

Item Value
RNA id XM_021613045.2
length 3688
RNA type mRNA
GC content 0.48
exon number 17
gene id frrs1a
representative True

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 55786481 ~ 55800644 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ACATAACTTGAACATTGAGATTGCAGAAAAGCCCTTCTCTTTGGCAATGACAAGGAGTGGCAAGTGGAATGTTAGTTAAAGAGACCGGTACTCACACTATGTAAGCCATGCCTCTTCCCATACAAGGCAAGCCCACATTGGAGGAAGAACCGCCCAGGGCATAAACTTTAAAAAGCCTTGCTCAGGCAATAAAACGCATACTATCCTTTTCGCAAGCAGTAAAGTATGCTGGAGATGGGTGGGAGGCTATGGACCATCCAGCTGTTAGTTCAgactctttgtttgacatcagtTGATGCCTTCTCCAATGGAAAAGTGACTGAAGCCTGTGGGAGTATGATGCCAAAACATGGCCATGCCCCCAATACCACCCACTCTCCCTACACTCTGGCTGTCAATGTCACTGAATTCAGTTCTGGAGATTACATCCAAGTTACCATATCTGGAACAACATACTTTGAGGGATTCCTGCTCGAGGCTCGGAATGCATCCAATCCGGACTCTGCCGCTGTCGGCTCCTTCATCCTGACCAATCCTAAAACCACACAACTGTTGCAATGTGGCCACACTCCGGATTCAGCTGTCAGTCACACAAGTGATGCCAGACAGACACAAATCGTGGTAATCTGGAAAGCTCCCCAAAACTCACCCGCCGCTGTCAAATTTCTTGTGACCGTAGTGGCTCATTACAAGACTTTCTGGGTGAAAATCCCCGGTCCTGTTGTGTCTCAGAGTGGGGTAACTCCCATCCCACCTAAACCCACCACACCTTCCACTACCATAAAGACGTCAACTCCCTCTGTGTTGCCCAGACCAttCAGCTCAGTGGGCTGTGGCCAACAGAAGTCCTGCCTGTTGGACCCAGTGGGATGTGACCCGGAAAAAGATCCATCGTGCTTCTTCCTGTCGTTTGCCCCCAAGGGTCAGACTGTGGTGTTTGAGCTCAGTGGGCCCTCAGATGGCTACATTGCCTTCGCCCTCTCCCATGACACATGGATGGGGGATGATGACATGTACCTATGTGTGAGGGATGACAGCTTGGTGGATGTGAGCGCAGCTTATGTCAAAGGAAGGTCCTACCCACAGGAGGCCTCTGAGAATGTTCTTACAGATGTGGCCTGGAGATTGGCGGATGGAGTCATTCAGTGTCGGTTTCGTCGACAAGTTCTTGTCCCACAGGACCCGACCCGGTTTAGTCTGGACGCACAGTACTACCTGTTCATGGCATACGGTGAAGCTGAAAACGGCGAGGTGCACAGGCATGGCCGCCAACCCCTCATATCCTCACAGCAGTCGGTCATCAACGGCCCAGCAGAGATTCTCAATGGCTCTCGATCACCACTTCTCATGAAATTTCACAGCGTTCTGATGTTAATTGCCTGGATGTTGGCTGGAAGCACGGGTACTTTCCTAGCCAGCTACTTCAAGCCTGATTGGCCAGAGAGAACACTGTTTGGTCAGAGAATTTGGTTCCAGGTGCATCGAGGGTTGATGATATTAACAGTGCTGCTTACCTGTGTGGCCTTCACTCTTCCCTTCATCTACAGAGGTGGTTGGAGTAAGCATGCTGGGGCCCATCCCTACCTGGGATGTACTGTACTAGCCCTGGCTCTCCTTCAGCCTATCATGGCCACTCTCAGACCTCCCCCTGACTCCTCCAGGAGGTGGGTGTTTAATTGGCTGCATTGGGGAGCTGGCACTGTTGCTGAGATTATGGCTGTGGCGGCCATGTTTTTGGGGATGGGCCAGCAATCTGTGCTCCTGCCTCACTCCTGGCGCCTGGTGGTTCTGGCTGGGTTCCTGGCATGGGTCGTTCTCTTGAGGGTGCTTCTTGGGCTCCATAAAAAAGGCTACATTAAAACACGATTTTGTGACTTTGTTTCCAAAGCGAGTGACACTGATCAGCAACGGATTCTTGCTGATGACTCAGAGGACAGCACTTGGGATGCATGGTTCAAAATTGTTGCCCTTCTTGCCTTTGTTATTGGGAATAGTGGGTTCCTGATCAGCTTCATTCACACCATCAGTGGATTGTGATGAATCTGTGAGAAGGGCCATTCCATGGTACATGACAACTCACTGTCTGGTGGAGGAAAGATGGAGGATCCTGATTCTTATTCAGATCCAGGCCACAGGCAGATCAAACCACTGAACCAGATCTAAAGCTATAAATGGAATGATAGggaatatatatatacaaaaaaatactGGATAGATTATCCATTTCACACGCACATCAAAAGTATTTCTGCACTATTGATTTTGCACGAATGTTCTTATCCCAACTTCTCAGGAAATGCAGTTGTACACTCAgcagccagtttattaggtatacCGTCCCGTTCACGTGGCCGTGGCTtagtgtgtatatactgtaaagcaagcagacaggcatcgagcacaggaggctgctgtggggaggacggctcgtaataataataatggcctGAACCGAGCgactggaatggtatcaaacacatggaagccATGTTTGACgcatttgataccgttccactaatgcctccagccattaccacaaacctgtcctccccaattaaggtcccaccaacctcctgtggcatcgaggcattcagttactgttcgccTGAACATTCGAATAGGcgaaacgagtgacctaagcgactgagCGTGGTATGATTGTCAGTGCCCGGCGCACTGGTaccagtatctcagaaatggcTGCCCTCctgggctgtacacacacacacacacacacacacacacgtgtctagGGTTTGCCGCGATGGGGGCGACAAACAaacatccagtcagtggcagtcctgtAGGCGGAAACAGCTCGTTGATGTAAGGTctaaggagaatggcaagaattgtgcaagctaacaggtgggAGACAAACcatggcgcagtacaacagtggtgtgcagaatggaATCTCGGAACGCAAAACTCGGctatccttgtcacggatgggctattgcagcagaccaCCACTCCTTTCAGCTATAAACAACTCTTCATTGGGCacgtgatcaccaacactggacaattgacgAGTGGAAAAAATATTGCCTGGTCTGaagaatcccggttcctgttgtgtCATGCTAATGGCAGACAGGATTTGGCATAAGTAGCAgagtccatggacccatcctgcctAGGTGTCATCGGTACAGGCTGGTGTAGGGAATGTTTTCCTGCCAtgtgttaggtcccttgatacgcTGTGGCAgttgttgctcaattggtatctgAACATTGGTCAGGAACAAACTCAATAGAGcatctttgggatgagatggcACGGGCTGTTCGCAGCATGAATGTACCGCCATCCAATCTACATTAACTCTGATGCCTTCatgtcagcatggaccaacatccctgtggaacgtttgacaccttgtagaattcAGGCGTTCTGGATGCAAAGGGGGGTCTGActcggtactagatgggtgtacctaaacTGTCCACTGAGTGTGTAATGCATTTCAATACTCGATACAGCCTTGTCCCATGAGTTCATgtttattacattacattttatcTGCGAAGTGTTGCTGAATATATGTAAGGGAGAATGCACAATTTATTCCCACAATGTTAATGAATAATTACATTCACTTTGTTCATTTATGTTTCCAAAACAGAAATTATCCTGTAGTGTAATATTGTTAAATAAATAACTTTCCAAATGTAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU822674 lncRNA upstream 45934 55739739 ~ 55740547 (+) True G724192
TU822673 lncRNA upstream 47330 55738442 ~ 55739151 (+) True G724191
TU822546 lncRNA upstream 62225 55723489 ~ 55724256 (+) True si:ch211-267e7.3
TU822633 lncRNA upstream 117923 55668217 ~ 55668558 (+) True G724154
TU822631 lncRNA upstream 120118 55662590 ~ 55666363 (+) True G724152
TU822720 lncRNA downstream 14742 55815386 ~ 55819692 (+) True G724237
TU822951 lncRNA downstream 45757 55846401 ~ 55846617 (+) True G724428
TU822964 lncRNA downstream 53794 55854438 ~ 55854956 (+) True G724441
TU822974 lncRNA downstream 68342 55868986 ~ 55869239 (+) True G724451
TU822978 lncRNA downstream 72396 55873040 ~ 55879674 (+) True G724454
XM_036985735.1 mRNA upstream 62210 55710162 ~ 55724271 (+) False si:ch211-267e7.3
XM_036985736.1 mRNA upstream 62210 55710162 ~ 55724271 (+) False si:ch211-267e7.3
XM_036985737.1 mRNA upstream 64676 55710156 ~ 55721805 (+) False si:ch211-267e7.3
XM_036985727.1 mRNA upstream 103559 55631929 ~ 55682922 (+) False LOC110530172
XM_036985741.1 mRNA downstream 115261 55915905 ~ 55950754 (+) False LOC110530181
XM_036985740.1 mRNA downstream 115261 55915905 ~ 55953989 (+) False LOC110530181
XM_021613048.2 mRNA downstream 115264 55915908 ~ 55978796 (+) True LOC110530181
XR_002474488.2 mRNA downstream 269335 56069979 ~ 56075431 (+) True LOC110530182
XM_036985742.1 mRNA downstream 313310 56113954 ~ 56250195 (+) True LOC110530943
TU822550 other upstream 68244 55710240 ~ 55718237 (+) False si:ch211-267e7.3
TU822189 other upstream 326361 55459696 ~ 55460120 (+) True LOC110530939
TU821992 other upstream 649850 55134030 ~ 55136631 (+) True LOC110530153
TU820675 other upstream 1116367 54624174 ~ 54670114 (+) True LOC118965528
TU820345 other upstream 1858522 53926217 ~ 53927959 (+) True rps28
TU824284 other downstream 1182926 56983570 ~ 56984285 (+) True G725573
TU824563 other downstream 1668228 57468872 ~ 57477729 (+) True LOC110530213
TU824624 other downstream 1712962 57513606 ~ 57515394 (+) False G725878
TU824625 other downstream 1712962 57513606 ~ 57515394 (+) True G725878
TU824655 other downstream 1754079 57554723 ~ 57555482 (+) True G725907

Expression Profile