RNA id: XM_021613047.2



Basic Information


Item Value
RNA id XM_021613047.2
length 8733
RNA type mRNA
GC content 0.45
exon number 7
gene id LOC110530179
representative False

Chromosome Information


Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 55872953 ~ 55896342 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


TTTTCCTTCTCGTTGCACGTCGTTGTTGTCACTTGCAAAATATTCAATACTCTCAAGGAATACAATGCAATATTTGGATCATGTTTTTCCCACTAGATATCTAAATACTCACAACATTTTTTATTGTACCATTTGGTTTTGCGGTTTGCTTCGATAGTGATTTGGTGCGCGAGTGACTGGCTGCAGTGGAGCCGTTCATTCAACACAAGCGCGACACTTGGCGATGAAGCTGAAACCACCAGCTACAGAAGCGTAATCTCTTACATTGCCAAAATTACGGGCGGAATTAAATACAACTCTCTGTCTCCGGCCTCtcaaaggagagacaggaggttCATCATGTCTGCTAAAGAGAGACTAAAAGGGAAGGTGACCAAAGACAGCGTCACCTTGCTGCCTTGTTTCTATTTCGTTGAGctcccaATCATGGCTTCCTCTGTGGTCAGCCTGTATTTCCTGGAGCTGACCGACGTGTTCAAACCGGTGCGGTTGGGCTACAGCTGCAATGACCGCAGTCTGAGTATGCCCTACATCAGGCCCGCTGAGGAAGTCATCCCTTTCCTCATGCTCTTCAGCCTGGCCTTCGCTGGACCTACAGCTacgATAATGATAGGAGAAGGTATCCTGTATTGCTGTCTGTCTAGGAGAAAGACTGGGGTCAAAACAGAGGCCAATATCAATGCAGCCGGCTGCAATTTCAACTCGTACATACGGCGTGCTGTTCGGTTTGTTGGGGTCCATGTATTTGGACTGTGCCTGACGGCTCTCATCACTGATATCATCCAGCTGTCGACGGGCTACCACGCCCCATACTTCCTGACAGTGTGTAAACCCAATTACACCACGCTCAACTTGACCTGTGACGACAGCTCCTTCATCACAGAGGACTTCTGTTCTGGAGGAGCAGACCCAGCCGTCATCGACGCTGGCAGGAAGTCCTTTCCCTCGCAGCATGCCACTCTGGCCGCCTTCGCTGCTGTCTACGTCTCTatgTACTTCAACGCTACGCTGACGGACTCCTCCAAGCTGCTGAAGCCCCTGCTGGTCTTCACCTTCATTATGGGTGGCATCATCTGTGGCCTGACCCGCATCATCCAGTTCAAGAACCACGCCATCGACGTCTACTGTGGCTTCCTCATCGGAGGCGGGATCGCCGTCTACCTGGGTCTGTATGCAGTGGGTAACTTTCAGCCTACTCGGGACACGTCCAGACAGCAGCCCCAGCCTCCCCCGCTCCGTGAGCCCCCCAGGAGCAACACCGTGCCCAACGTCAGCCAGAGCGCAGGGCGCCACCTGCAGCCCAACAGCCTCAACAGCATGAACAGCCTGAACAGCATCAGCACCACCGATACCCTCACCGCCGCCCGTCCCGCGACCCTCCTGACCCGGGTCCCCTCCTGCCGCGAGTCCAGCTCCCTGAACAACCTGAAGAGGGCCAGTGCTGATGTGGAGTGCATCACCTCGTCAAGCACGCTGTGTAAACAGGACAGCTTGGTGACCTTTAACAGTAGCACGTTACCCAGGTCGCACGGCGGCTCGCTCCCCGAAGAGCACCGGGTCCCGCGCCGCCACGCGAGCATCCACGCCTCCATGGACTCCACGCGCTCCAAGCAGCTGCTGTCGCAGTGGAAGAGCAAGAACGAGAACCGCAAGTTCTCACTGCAGGTGATGGAcagtggggtggtggtgggaCGCCACCAttcaacatcctcctcctcctcgccccAGAGGACCATGGAGCTGAGGTGCAGCTCTGAGCCGTCCGCCATGGGCCTGGAGGCGGAGCTCCGTGCTCAGGGCCACATCCCCGCCCAGTACATGAAGCTGGCAGCTAGCATCGTGCCGCTGTCCAACCACCTCCCCCACAATGGGGGCAGCAGCGGCCTGGCCGCGGGGGCCCGCGTCTCCATCCAGTCCCGGCCAGGCTCCTCCCAGCTGGTCCACATCCCCGAGGAGACCCAGGAGCACAACAGCAGCACCTCCACCAGGGAGGATGAGGATGACGAGGACAGAGAGGATAGCTATGTCGGCGGTGGGATCCCTGGCGGAGGAGGCTCGGCGCGCTCCAAGTGGCTGAAAGTGGCCAAAGAGGGCGCCCTGTGCAGGACTAATAGCCTAACTAACCAGCCGCGCATCATGCAGGTCATCACCGTGTCCAAGCAGCAGGGTCTACTCCAGCACGGCAGCCCCAAGAGCTCTGAGGACGGTAGCGTGGTCAGCTGCACAGGCTCCATCCATTACAAGGCCCTGACAGACCAGGAGCCGGGCCAGGGCATCGTAAGGGTGGAGGCCCACCCGGAAAACAAGCCTGTGATCAAGCCTCCGGACGGCAGTGGCTCCTGGAGGTGGAAGCCGCAGGAGCAACGGGGTAGCATCCGCCAGTCCTTTGAGCTCAACGACCTCAACCGCGACTCGGAGAGCTGCGACTCGCTCAAGGACGGCTACGGCTCCATCGACGGGAGGATGAGTCAGACGGGTACGGACACTGGCAGCGAGCGGGGAGGGGGTCACCCCTACGTGCACcacccacactaccaccaccaccaccaccacccccaccaggGCATCACCACCATCCGTGTGACCCCTGTGGAGGGACTAAGTGGAGTGGGCAGCGAGGCCGCCTCCGAGACCCTTTCCATCGCCTCCAGTCGGGAGTCCACCCTGCGGAGGAAGGGCAAAATCATCCTGCTCCCGGATAGAGGTCCAAGTCCGGACAACTCCAGGAACTATTTCAAAGGTGCCTCCCAAACACCGCCCCCCACCCTGGGTCTGGCGTATAGGGAGTGAACAGCTGCACAGTCAGCACTTATTCTTACCATTCCCCCTTACTGCCCATGTGGTGGTCCTATCTGTCCCCCCCCCATGAGTGGCCTTCTACACTGGATCTAGTCTGGACCTCACAACAAGACCAATGAGAACATTCAGCTCATAAACGGCTGTATATTATCAAACCCGTCATGGATTCAGTGGAGTTAGCTGGGCTGGATAAATTGTCCTATGGTCATATAGTTCATTAGAGCTATCTTAGTGTGTCTGGTCCAGGAAGGccactgtacagtacatagggGTTTCTCCATTACTCAATAATCTGATCCTTCTTCATTTTTCGCAGTTGTTTTACTGTTAGACCTGGTTTGATAGGACCGGGGCTACCTTTATTGCTGTGTGTTCTTTGAGAAAATGAAACTATAGCACGCACAATAATCCTTTAAGAATGCAGGAGACGCTGGATAATCGCCACAAGGTCATTTTGCGCACACTTTTCAACCCTCCTTTCATTACATTAACTTTGATCCATTTGAGAAGCACAACTTCTAACTCTTTTTATATAGTGGCTAAAGTGGTTTGAACTAGGAATTTGATACTATTTTGTTATCACCCGGCAAGAGCCTTCGATGGCAATAAACCGTGCAAGTTGTTTATtaagggtgcgttcgtaaattctcTCCGGAGTGCCAGAGGGTGCTCTgagtgcgttcgtaaattcagagcgttgtcagattgtctgtttgtacattcagagcgtttcactctcggagcgttcagagcgcacactgaacgctctggccgaggagtagagTTGGCAGTCAACGGCAGTCAatcacccaagctaactggctaaagttagctagcttgctagctacttccagacataaatgagagaacagctcactctgaccattttactcaccctagcagagctggttaggctgtttatgttatccagagcgttgatgactgtaactgtgctgctggcaacaatttagtAACGCTTTTTTTTGCCTATGTTTACTGAtactggccatattcaacagctgttgagcgttcataaattcatcagttattctgctctctggcacactctgacgagagtgctctgaaatctgagtagatagccagagtgaattttaTGAACGCACCCAAAGTTGATAGACATGATGTTTTGTAGGCTTTTTCCATTGACGATCTGTTCTCTTTCTCAGCATATTAATATCTCTGTGTAATGTGACTGTCATAGTGTGTTGCACTGCATAGCAACTGCATAGTAAATGCATAGCAACTCTAGAGGTGCTTTTCATAATACAACTTTCATACATATAGTGCTCTGACAATTGTGAAAATAAATGTTTCTATTTTTttgctatgtactgtacatatttatAGTACTCTGATTGTGCTGACAACAATATTCACATGTCCTCATTTGCTTTTTGCTAATTATTGATAGTCTATTTTACCAGAGAtgtgtttattgttgtttttGGAACTTTAGCAGGATATGCATTGATTTGGCAGGTGATTTATAAAAGAGCGATGTTTTGAGAAATCACCAAATGTTATCACTGGGGTTAGAAATCCCAGTAACTCTCCCAAAATCCCCAGGTTTTTCAGAAGTCGTGAGTGGATATCCTTCTGACGCTGGGATTCTtacaaccaggatttctggaaaacagtATATCatgctttctttttttttgctcacAGTGGTATACAGTGGCAAATACTGTATATTAATAGATGAACAGGGGCAGTGCATACAGTGTGTAAGATAATTGATTAGTAGGGGCAGTGGGTTAACTATGTAAGATAATTTATTAGTAGGGGCAGTGGGTTAACTATGTAAGATAATTGCTTACTAGGAgccttaatttaaaaaaacatttcttaaagatgGGAAATTCAAGAAGGACTTTGAGTCTTTGTGTCCTTTGTTGCCTTTAAAATAAGTATACTAATAAGTATTCGCTGTTTTGATAAATATTTTGATAAAGTACCCTTTTTCCTATCAGCTCATATAGCCAACTAAAATCTATAACTGCTGTACATGTTGTGAATGCTACTCACTTTGCACTCAACTCATTTTCAAGTAAATGGATCTATTGATGAGTGCCATAAAAAGGAAACCACTCTCGGGAGAGGCTTCACTTCCCAACCCATTGCTATGCGCACACCAATTGGTCTAATTATCCGGTTGATTTTCCAGATTGGACAATGTGACAGCCAAGCCTGTACTGTGGACTTTGGTTGTACTGTTAGATTAAATTAAATCATACATTCGTCTCCCTTGGGCTATAATGTACAGTGTACGAGTCACGACTGAATCCCTGTTTATAGCTGGTTCTAACATGCGTCCTTTCTTGATCTTGTTCACATTCTGACTGTGCATTGTGATTGGATAGTGATCAGATCTTTCAGCCCACATCCGGAGGTAGTCAGGTACACATAGGTGGTCAGGCACACAAGTATAGACAGATGTGGACAGTTCAACCATTTTAAATCATCGTTATCTCGCCCTTTAAAATCATTGACAGATGTCAATATgtgtcttaaaataaataaatatttttttgaaagaaTAGCAGTCAAATAATTTACATACAGGGAGGAACCAGGAAATCTGGTACCAATGCAGACACAGTGGACGGATTAGGCTTTTCACATCGGATATTTTTCAGAGGTGATCTGAtttgtcaaaagaccaatttgtgaaaCAAAGATCAGAACTGGGctacctgtgtaaatgcagcctttgAGACATTTTAATACCACATTAGATGCATTtctgaaaatgtgggcacaatcagagtGTGGGCAAGACCAGCACTAAGAACGCATGTTAGCGCCAGGTATAAACAAGTCTTGAGAGACGAGGTTGTATAATGCCAAtaccatccctctccctcccacaagAGGAATAGTAAACAAGTGAGTCATAATCGGTCGAAAGCAAGTTTATTatagtaaactaaaactgaaaccAAAACTAATCATGAAAAAACAATTTAGTAAAACAAAATTAACAAACCTGTtttgaaaaactaaaactatactgaaactatTATCTTTGACTCCAAAACTAACTAAAATAAAGCATCATGAATTGTGtccagttttatattttttatttttttacaaacaaATTGGGTGGTAAATGCGTCCAGGAGATGGCGACGTTTCAAATAGGCCTAGCTTGTGAATcgctacagagaggaagaggcgaagcgagagacTTGAATCTACCCCAAAATCTGTCCATGTGGAAAAAAACAGACAGAAGCAGAGGAAGTGGGGATTTATTTGTATGCAGCTGTCAAATTTGGTCAAAACACATTTGAATTGCTAATTTGCTgtgtgaggcttatttgatcgaatagcCGTAATGTTTATATTGTTAAGTGGACTCACGTGGAATTCCGACAACTTTGAGAAAAACAATTTTGCAGTGATGAAAAAAGTACCCAgtagtcatacttgagtaaaagtaaagataccttgatAAAAAATGACTCAAATGACTCAGTGaaatggtggtggatctttgatgttatggggctattttgctttcACTGGTCCTGCgacccttgttaaggtcaacggcttCATGGCATCATTTAGCCAAAAGCCTGGTTGTCTCTGCCAGGATGCTGAAacttggccacaagtggatcttccagcaagacaattaccccaagcacacatcaaaatccagaaagatgcagtccataagcacagacaaaaaatatcaaggatctggaaggattctgtatggaggaatggtctgagGTCCCTCCcgatgtgttctccaactcataaaatATTTGAGAAAAAGGATCAGTGTCATAATCTTCGAACACTATCACTAGCTAAAAATAGTCTAGGTATTcttacatgtacagtactactAAATGTAAAAAGCACTGGTGTAAACATACTCTAGAGAAAGTTTCCTATCACCGTATGTTTTGCTATTCCAGATCTTTCGCTATTCCTTTTTTTACATTGAGATTGATTTAATAATTTCTAATAATTTTATTGAATAATTTAAAACTAACCTATGACCTTAAAAGTCACCTTATGTATAACTGCCTCCCAGTTGCAAGAAGACGACATCCCAAAAAAACACCCCCAAAAAACTATGCAACACAAATGGCTCCTAGCCTCCCATGCATGCTGTCTGTCCCTAACACTAAAACTGAAACTAAGGGCTCTATTAAATCCATAGCGCTGAAGATCCGCTATATAGCGTGATTGACAATTTAAGGCAACGTTCCCCGCGGGCGCGGCGACTGCATTCACTGTAAACgttgcatatgtcggctcaatcggaaatgacctttacattttaaCGTGGATCTTCGGCGACACTCtggcgatacggattgaatccagcACTAAataatatcaaaacaaaatataaatatttttatacAACTCAAAACTAAATCAAAACTAACAAATCAGGTCGGAAAACGAACTGAAACTAAGCTGAATTTCAAATAAAAATGTCAAAACTAATAGAAATAAAAGTGAATATAAACACACAACTATTACAACCTTGATCTAAAGTACAGAAGTGAAAAAATAACATTACTTTCACTACCACTGGTTAGTGGCACTGTAACTATCACACCTGATCTATATGTGTGTGACATGCTGCCACTGAACAAGACTATTGTTCAAGGACAAATAATCAATGATTTATATCCAGTTTGTTGTGTACAAAGGTAGAACCATTCAGCAATCTATAAATGTAAGTAGGGTGTGTATAGTACGTATATTATAGTAGGCTGATACCTTTACAAAACTGTGCCAAGAGCTTACTGCACATATACAGCAGGGGTCTCAAAGCCATTTCGCCGGGGACCACGTTCTCTTTCAACGAGGTTAAATCAAGGTCAGACCGCATTAAATACGTGTGTGGCCCGTGGGCCGCCAGTTTGAGACCCCTGACATGAGTGTTATGCGTAAAGAACACTATCTACTTATGAAGTAACATGAGATATCTACCACAGTatcatttttttaatttttttttttacagtggtcATGATATGTCAGTCGCATTTGGATTGCCAAGATAAGGAATGTAATTCAGTTTGTTTGTGTCTGTACACAATATGAACGTAAGATGTATTAAATGAAGATGTTGTTAAAAATGTCCATCGATAATcacgttttttttgtgtgtgtgtgtgtgtgtttttcttttcAGTGACACTGAATTGATATTATATAAATATTCTACATATTTTTTATGTCTCAAAGGGTATATTGGAAGCGACAGCTTAAGGGGAAAATGTTTCATATTTGCCTGTGTACTTTCATGATGGCTTTAAACTGTGGTCATATCTGCATGGTCATTTTGATATGTACTGTATCTAAAGGCTTATTTTTTTGTATATGACACCTTTTGAAAGTTCTGGCTGGTACCTTGATTTATACCTACTCAattgatcaatcaatcaaccaattgATTAACTCTGAATTATTTCTATCACTGTAAATACAATATTTGTAACTTTGCCATGCAGACAATGTTGTTAGGAAAGCATATCTACAGAAATAAAATCATGTTTGGCAGAAGATGTTTTGATGTTCAATAGACTGAGGATGCATTTGTACAGAGTTGAGATTATAGAAATGGAATCTATAATaatctagtcattctatttctatggtcgaACTGACAGTTGGCTTTATTATACATCTGCAACGTTGGCCTGTGCACATTCAGAACAGATGTGGTGATTGGCAGATAGCTTTGTGGCTAGCGAAACAGAAGCCTCAGTCAGAAGTCGCTCTTATTTAGAGGGTCGAATTCCTATCATTGTGTATAATGATACCACCAGACATACTCTGTATTCCACATTCTAAATACACTCTGTATTTCACTATTCTATGGAGTTGACTATGTCTAAATATTGAAATAAATGTTTGATTATCAAACTA

Function


GO: NA

KEGG: NA

JBrowse2


Loading

Neighbor


RNA id RNA type direction distance location representative gene id
TU823124 lncRNA downstream 4166 55868553 ~ 55868787 (-) True G724595
TU823123 lncRNA downstream 4462 55868199 ~ 55868491 (-) True G724594
TU823110 lncRNA downstream 15546 55855479 ~ 55857407 (-) True G724584
TU822939 lncRNA downstream 46494 55826035 ~ 55826459 (-) True G724416
TU822916 lncRNA downstream 79135 55793038 ~ 55793818 (-) True G724406
TU823139 lncRNA upstream 2670 55899012 ~ 55899229 (-) True G724610
TU823146 lncRNA upstream 13366 55909708 ~ 55910070 (-) True G724617
TU823197 lncRNA upstream 81591 55977933 ~ 55978445 (-) True G724665
TU823297 lncRNA upstream 210253 56106595 ~ 56106864 (-) True G724756
TU823301 lncRNA upstream 211851 56108193 ~ 56108409 (-) True G724760
XM_021613046.2 mRNA downstream 33612 55815384 ~ 55839341 (-) True LOC110530178
XM_036985739.1 mRNA downstream 58025 55799908 ~ 55814928 (-) False LOC110530176
XM_021613042.2 mRNA downstream 58605 55801428 ~ 55814348 (-) True LOC110530176
XM_021613041.2 mRNA downstream 58610 55799908 ~ 55814343 (-) False LOC110530176
XM_021613040.2 mRNA downstream 98780 55769426 ~ 55774173 (-) False LOC110530175
XM_021613049.2 mRNA upstream 378749 56275091 ~ 56294377 (-) True LOC110530183
XM_021613052.2 mRNA upstream 478246 56374588 ~ 56386152 (-) False LOC110530186
XM_021613051.2 mRNA upstream 478246 56374588 ~ 56386539 (-) False LOC110530186
XM_021613053.2 mRNA upstream 478246 56374588 ~ 56386555 (-) False LOC110530186
XM_021613061.2 mRNA upstream 573799 56470141 ~ 56486902 (-) False LOC110530191
TU822909 other downstream 81468 55785517 ~ 55791485 (-) True G724400
TU822777 other downstream 226939 55635538 ~ 55646014 (-) True G724287
TU822429 other downstream 476068 55396624 ~ 55396885 (-) True G723966
TU822417 other downstream 495177 55377281 ~ 55377776 (-) True G723955
TU821231 other downstream 1590975 54281685 ~ 54281978 (-) True G722864
TU823541 other upstream 223861 56120203 ~ 56128288 (-) False G724943
TU823623 other upstream 323174 56219516 ~ 56232939 (-) True G725007
TU823714 other upstream 478311 56374653 ~ 56386516 (-) False LOC110530186
TU823713 other upstream 486787 56383129 ~ 56386516 (-) True LOC110530186
TU823957 other upstream 692001 56588343 ~ 56589271 (-) True G725280

Expression Profile


XM_021613047.2 Expression in all Baseline Samples

Bar chart with 20 bars.
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying values. Range: 0 to 2.
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XM_021613047.2 Expression in each Bioproject

Bar chart with 19 bars.
XM_021613047.2 Expression in each Sample
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 75.
End of interactive chart.