RNA id: XM_021613048.2


Basic Information

Item Value
RNA id XM_021613048.2
length 3525
RNA type mRNA
GC content 0.42
exon number 6
gene id LOC110530181
representative True

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 55915905 ~ 55978796 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

gcattttggtcttccgatccatctcacctctcctcttcagatgaagaggaggacggtcGTGACAACTAGGAATTCAGCCAAAAAATGTGTTTCATTTTtataggaaatctgttcccaaaattcccacaaaaaatatatatatatgtgatcgTGTCTCAAAATGCAATGAAGCTGTGAAATTATGTCATTTTCAAATGCAATCTCCTTTTgagcttagttgtggtcaatttgagGTGGACAAATTATTATTATCCAACAAACAACCACTCGTTCCGACAAAAATTGGATTttagctgaatctagttgcctacagATGTTGCTGTCCTACACATGAACGTTAACAAGATCCTGTGGCTCATGCTAATGGTTGGCGCGCGCTGTCACTCATCATCGCTCAAGGCGGTAAGAAGTCTGCATGCCTATGGTTCCGTACATTCCACGCACATCTCTCACGCCACGGAAGGAAAGTCGATTCCATCCCACGCGCTCATGTTCCCAACCCGCTCcacactctctttctgtcttagCGCTCACCCTCGCATGGATCTCTGAGCGGTGTCAAGACTGAGCTCGCCTCTTCACCTAAACACGATGTTTTATGGATTATCTTCCATTGTAGTAGCGAGAGATATATGTGGATGGAACGCGGAGCGAGGTGGAGTACTGGACGGGTTACAGCAGTAGCCTAAAAACCGGGCGGCTGGGTGTTCCATTCAACCATGCTTTACTTCCAGCTGGTGATCATGGCTGGGACTGTCATGTTGGCATACTACTTTGAGTACACCGACACTTTCAACGTGCACGTCCAAGGGTTTTTCTGCTATGACAATGCCTACACCAAGCCTTACCATGGACCCGAGGCGTCCAGCGCTGTTCCTCCTGTAATACTTTACGCAGTGGTCTGCGGATTGCCGTTGCTTTTGATCACAGCCATAGAGTCGGTGTTGTTTCTGCTTCAGTATATGTCAGAGGACCTGGACAACAGGGAGAAGATCATCGTCATGGGAGACTGCTGTTACCTCAATCCTCTGGTGCGCAGGACCTTCCGCTTCCTGGgtgtgTATGCGTTCGGACTGTTCTCCACAGACATCTTTGTAAACGCAGGCCAGGTTGTAACAGGAAACCTGTCCCCCCACTTCCTGACGGTGTGTAAGCCCAACTACACGGCCCTGGGCTGCATGCAGACCGCCCGCTTCGTCAACCAAAAGGGGGTGTGCACGGGAAACGAGGACGACATCATGCGCGCCCGCAAATCCTTCCCCTCCAAAGAGGCGGCACTCAGTGTCTACGCCGCGCTCTACACAGCGATGTACATCACGTTAACAGTGAAGGCCAAGGGGACCAAGCTGGCCAAGCCTGTCGTATCTCTGGGTCTCATATGTCTGGCGTTTCTCACGGGCATCAACAGGGTGGTGGAGTACCGCAACCACTGGTGTGACGTCATCGCCGGATTCATCATTGGAGGGGCCATAGCAGTCTTCATGGTTCTAGGGGTGGTGCAGAACTTCAAAGGGAAGACCCTGCTGAACGAGATCCCACCGGAGGAGAGAGTGGTCGGCAGTGTTCCTATGATGGGCCAGCCCCGCATCATGGACAACACCATGGAGAAGTACATAGCCTCACAGAATTCTAATACTTTCGCCGAGGTCACATGACAATGAATGTGTCACCTGACACACAGTTGGATGTGGTTGCTGCTCACTGCCATGGTCGCCAGAGGGCAACACAGATCCTGAAGATGATATCTATGTATAACAGGGTTGTGGTCAGTAGTACTTAGTGAATTctggaagtaaactgaaattcaatAATTGAAAAAAGGCATCTGTTTTCAAGACTTCtcaataaacaaaaaaaaatgttgttttccattattttattttaaattcaaATCACTTCAAGAATTGACTTCAATtcaaattgaccccaaccttgATCTATACAGTATGACCCGATTTCCAAATCAAACATCCTTTAGCTTTACTTTTTTTTTGCTCTCCAATCAACATGTTCGCTCCTTCTGTTCTTTGACTGATGAATGGTGTTCATTGATTTCCCAAAAAGTATTCCTTATTTGTATATACTATAAGTTACTGTATCAAACACGtctcatatacagtatgtgtgtatatatatatatatatgtattgtacggcatttttattttatttcctttAATGTCAACGATCATGAATCCTAGCCAACAGCGTAAACGTGTATAATGTGTTTTCTATCATGGCTGTTTATTACTTTTTATGTGCTTGCTTGTGAAAGTGCAATCCAAGCTGTATCTTGTCAGAGCCAATATGTATGGGCCTACTTCTGTCTAGATTTTACCAACCAGACCTGAGAGAATGAAGAGCCAAAGATCATTGCCATTTTATATAGGCTTTGGTAGTTTTCAGAGAAATCCATGAATGAATTGTGTCCCTCTTACGATTAGCTCGAAATACATGTGCATTTAGGTGTGCAGCTATGCGACTGTGTGTGCATATGCGCATGGAGCCGTAaaagtgtgtccgtgtgtgtgtgcttgataaACCTTTGAACATAATTTTCTCTTGTGGATTGAAGGATGTTGCTTAGGGCTTGCCAGACAATCAACAACCATAATATGACCACGGTCAGGCAACAGAGCCAGTGCGGAAATAATATGGAAATAAAGAGATGTTTTTTCATTTCTCGGGTTTCATTCCTCCTATTTTATTGTGTTGCAAAAGCATGGATCTATACTGTTTGTTGATATGTCAGATACCTGTTAAGCACAATATGGAGTATTGTTTTAAACTCACAGGCCAGCAATGATATTCATAGTTGATGCATGACCAGACTTTAGTTTCCCAAATGCATTATGGGTAAAGTTATTTTTATACCACCACAATTTGATGAAAACCCCTGTTATATGTTAATCTCCAAGATGACATTTTTACACTGTTGTACTGTACGTTGCTGTACTGTTTACCGTGTACTGTCTGAATGGTATGTCGTACTGTATGACCCCTAACAGTCTCAGACCGTCATCTGAAAATAGGGAGGGTTCTACTATTCATGTGCAGTTAGAAAAGGTTTCTATACATGTACAATGTGATGGCATGGTTTTTATACTTTTAACATCTCATTATTTACTTTGTCTTAGTTTTTATAGAAAATGTAGGGGGCATTTGAATGATTCTGGAGATTGTTGTTCACTATCAACCATTTCGTTTcttaaaaaatatgtaaaaatattaattataatatataatataaaatgtataatattAAAGTTGGATTTGTGTATTGTTTTGATCTTATATATAGTTTGAGTGTTAGTTTTCGCTTGTACAGATTTCGTTACTTTTATAACTCTTGTTTTGATATTGTCCCATTATACCAGATCTTTGTTTATTGATCTCATCACTATGAGTAACATTAACCCAGCAGCAGCTGCAGGACCTCTTACACTGTAGAAAATGAAAAAATAACTAAACTGTGAGAAAGTTGCGGTGTAAATGTATTTGaatgaaatcaaaataaataGGTTTG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU823008 lncRNA upstream 5808 55909885 ~ 55910100 (+) True G724484
TU823004 lncRNA upstream 8218 55907322 ~ 55907690 (+) True G724480
TU822997 lncRNA upstream 16704 55898949 ~ 55899204 (+) True G724473
TU822982 lncRNA upstream 31788 55883765 ~ 55884120 (+) True G724458
TU822981 lncRNA upstream 32158 55883475 ~ 55883750 (+) True G724457
TU823261 lncRNA downstream 107143 56085939 ~ 56086154 (+) True G724720
TU823273 lncRNA downstream 115772 56094568 ~ 56094806 (+) True G724732
TU823287 lncRNA downstream 123217 56102013 ~ 56102367 (+) True G724746
TU823293 lncRNA downstream 127195 56105991 ~ 56106250 (+) True G724752
TU823355 lncRNA downstream 210411 56189207 ~ 56189584 (+) False G724766
XM_021613045.2 mRNA upstream 115264 55786481 ~ 55800644 (+) True frrs1a
XM_036985735.1 mRNA upstream 191637 55710162 ~ 55724271 (+) False si:ch211-267e7.3
XM_036985736.1 mRNA upstream 191637 55710162 ~ 55724271 (+) False si:ch211-267e7.3
XM_036985737.1 mRNA upstream 194103 55710156 ~ 55721805 (+) False si:ch211-267e7.3
XM_036985734.1 mRNA upstream 232986 55632302 ~ 55682922 (+) True LOC110530172
XR_002474488.2 mRNA downstream 91183 56069979 ~ 56075431 (+) True LOC110530182
XM_036985742.1 mRNA downstream 135158 56113954 ~ 56250195 (+) True LOC110530943
XR_005052916.1 mRNA downstream 314796 56293592 ~ 56305010 (+) False LOC118965531
XR_005052915.1 mRNA downstream 314802 56293598 ~ 56305010 (+) False LOC118965531
XR_005052917.1 mRNA downstream 315492 56294288 ~ 56305010 (+) False LOC118965531
TU822550 other upstream 197671 55710240 ~ 55718237 (+) False si:ch211-267e7.3
TU822189 other upstream 455788 55459696 ~ 55460120 (+) True LOC110530939
TU821992 other upstream 779277 55134030 ~ 55136631 (+) True LOC110530153
TU820675 other upstream 1245794 54624174 ~ 54670114 (+) True LOC118965528
TU820345 other upstream 1987949 53926217 ~ 53927959 (+) True rps28
TU824284 other downstream 1004774 56983570 ~ 56984285 (+) True G725573
TU824563 other downstream 1490076 57468872 ~ 57477729 (+) True LOC110530213
TU824624 other downstream 1534810 57513606 ~ 57515394 (+) False G725878
TU824625 other downstream 1534810 57513606 ~ 57515394 (+) True G725878
TU824655 other downstream 1575927 57554723 ~ 57555482 (+) True G725907

Expression Profile