RNA id: XR_002474488.2


Basic Information

Item Value
RNA id XR_002474488.2
length 2665
RNA type mRNA
GC content 0.45
exon number 3
gene id LOC110530182
representative True

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 56069979 ~ 56075431 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ttgctccctttctctttctctcctcctctctctctccctctctttctcctcctctcttgctgtctctccctcAGTTTCTCAGTCCCTCTTTATCCGTCCGTGAGTTTGTTTGCCTTGGCGAGTGCAACAACTGGCTTCGATCAGTGACTTTCCAAtcttcttgtttttattttattttttccccccttAATGAGTGAGCTGTGCCTACGTTCTCTACCACCTACCATACTGGAAGAGTGCATCTCCGGGACTAGAacgactggctggctggttggctggttgccTTACTGACTGTTTGACTGACAGACTCGGTGGGTCTTGGGTGCTTTGGGGCTGTGGCGTCCAGCATAGAGGCTGAAGATATACAGGGGGGGTTCCGCCTGTTTCAATGCACCAGCGACGGCAGTAGGAGCACATGTTTCCCTGCGCTCTATCCTCTGTGCTCCCTGCTCTCACTAGCATGGTAAACCACATGAATCAAGCGTGGAACGGGGCCGCACGGCGCCGTCGGCAGCAACTGCAGCCTTAAACGATCCCAGTCTTCTCCTCGCAGGCGAGGCGACGTCAGATGACTGACTCTCCGGCTTTGTGCACAGTGGAAGGGAAGCTCTCTCTCAGGAGGAACAGGAATGTAAGGGGCTCTCATTTTGCTTGGATTTGCGTCAGTAAAAGCTGATTGCCCAGTGCCACAGAGGAGTGCAATCGAATGAAGGGAATTCCGAGGAGAAGAATGGTCTGATTGGTGCCTGCAGAACACATCTGACATGGAGGGCCCCACCTGCCCCATCCTCGGGCAGCAGGCTATCTTCAATCAATCACTCAACTCATAGAGAACATGACATCACTCAGGCTCACACTACTATTGAGGACCTCTTGAGTTCCCCTGCTGCTGTCCCCAatgccctctcttctcttcctccccctcctctgtgaCTCTCTTCGGTGACGGGTATTCTTGGGTGGATAATACGGATCACGTTGTTATTGCTTAAGAATACGCGTAGTTGAGGAGAGTCCTCTCGACACTGACTTGGAGGAGCTAAAGGAGCTAACGTCCCGCTGCATGAGCCAAAGTAGAGCCAGGATGACTGCCTGGTTTCCATATCCAGGACCATTTATCATGTAACTGGACAGATTAACAAAGCCTAATTACTTTACTGGGCTTTCAGCTACGCTTTCCAGCCTCTATAGACGCTAGCAGCAAGAAGAGAgaaagcgcgagagagagagcgagagagagagaaagcgagagagagagaaagcaaggagagagagcgagagagagagagagagagagatattaaacTCTTACAGTTACCTCTCCCAGGATGTTTTTTTTCACAGTATCGTATTATGGTGCAGTGTAATATGATTTGATTAACCATTCTGACGAATGTTGTGTCTTCTGTGTATCGACTCCACCagtgtttatttattatttagcATTTTGTACAATTTGTTCATTTTGCCTTTCCGGATGAAACAGGCTATTATGTTCGTTTTCACTTTAGGGAGTCGTGTTTGGTACTACAGGCTTGCTTGGTGCAGTAATGGACATTTGTATTGGtcttaaaaaatacaaaagacCTCCTACGCAACATTTAGCTTGCATACAAATAGATTTTGTGGTAACACGGTTTCTGGCCTCAGGACTGCTGCCCAGAGATGGCCATATTGCCTGCGGATACCTCATTGAGAGTGAAAGAGTAGATTGGGAGAATATGTCAGGAGAAGGAAAAACTATGAAGGAGTAACTGAATTTGAACCCAACATATGTATATTATACCTCAGTCCTGTGTATCAATACTAAAGGAAATTATATTACAGAGAGCTGGTTGTTAGTGATCACAGAGTAAATATCAATACTCAGAGAAACTGCACTGGCACATTTAATTTATTCCACAATCTTGCGCCATACAGGCCGTCCCTCTGAAGATAAATTCTGCAAGCCCAGTAACATTATTCCCTGACTTAATGTGTTTGCGACAAAGGGACATTCTCATCCAAAATGATTTGCACATCAAGAAGAGTCATTACGCTTTAATGGTGTCGGGAAATGACCCTCTCTTAGCTTACGCTGGTGGAAATCAATGAGGCCTGCATTACAGTGTTATTGTGACGGTCATTTTCTGCtgaatcatgctgtttaatttcTTGCCCTTCGACAAATCATCCACCGACTTATCAATTTGGCCAGAGAGCTTACGTTTGATTGCATTAGATGAGatcacataaaataaataaaataattgaagTTCCTCTAAAAATGCTACCATGACATCTCTTGAGTCTGCTATGAATCTAATGATCCTATCAATCTCAAGCTTATCTAAGACTGAAAGGAGAAGGCAGAGAGGCTCGAGCCTCTATTGAATCTATTTGTACTGTCATAACTGGATCCTACCAGTAGGGGAGCCCTGTAGCTCACAGTCAGACAATGAACTCAATGAACTGTTAGCAAAGCTGTGTGTTTGGCAGGACAAATGGGCATGCTTTTGACATTCTGTCATTTCCGTTTATGACATTTTGAACATCATTTTCTCATCAGATATTTTCGTGAATTGACTGTATCTATTTTTATGGCATGTTGAAAACCCAGACAATCTGTAAAATGTTGTGGTCCGAAAACAATATGACAAACAATAAACAAACCATTTGAAATATG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU823008 lncRNA upstream 159879 55909885 ~ 55910100 (+) True G724484
TU823004 lncRNA upstream 162289 55907322 ~ 55907690 (+) True G724480
TU822997 lncRNA upstream 170775 55898949 ~ 55899204 (+) True G724473
TU822982 lncRNA upstream 185859 55883765 ~ 55884120 (+) True G724458
TU822981 lncRNA upstream 186229 55883475 ~ 55883750 (+) True G724457
TU823261 lncRNA downstream 10508 56085939 ~ 56086154 (+) True G724720
TU823273 lncRNA downstream 19137 56094568 ~ 56094806 (+) True G724732
TU823287 lncRNA downstream 26582 56102013 ~ 56102367 (+) True G724746
TU823293 lncRNA downstream 30560 56105991 ~ 56106250 (+) True G724752
TU823355 lncRNA downstream 113776 56189207 ~ 56189584 (+) False G724766
XM_021613048.2 mRNA upstream 91183 55915908 ~ 55978796 (+) True LOC110530181
XM_036985740.1 mRNA upstream 115990 55915905 ~ 55953989 (+) False LOC110530181
XM_036985741.1 mRNA upstream 119225 55915905 ~ 55950754 (+) False LOC110530181
XM_021613045.2 mRNA upstream 269335 55786481 ~ 55800644 (+) True frrs1a
XM_036985735.1 mRNA upstream 345708 55710162 ~ 55724271 (+) False si:ch211-267e7.3
XM_036985742.1 mRNA downstream 38523 56113954 ~ 56250195 (+) True LOC110530943
XR_005052916.1 mRNA downstream 218161 56293592 ~ 56305010 (+) False LOC118965531
XR_005052915.1 mRNA downstream 218167 56293598 ~ 56305010 (+) False LOC118965531
XR_005052917.1 mRNA downstream 218857 56294288 ~ 56305010 (+) False LOC118965531
XR_005052918.1 mRNA downstream 227492 56302923 ~ 56305010 (+) True LOC118965531
TU822550 other upstream 351742 55710240 ~ 55718237 (+) False si:ch211-267e7.3
TU822189 other upstream 609859 55459696 ~ 55460120 (+) True LOC110530939
TU821992 other upstream 933348 55134030 ~ 55136631 (+) True LOC110530153
TU820675 other upstream 1399865 54624174 ~ 54670114 (+) True LOC118965528
TU820345 other upstream 2142020 53926217 ~ 53927959 (+) True rps28
TU824284 other downstream 908139 56983570 ~ 56984285 (+) True G725573
TU824563 other downstream 1393441 57468872 ~ 57477729 (+) True LOC110530213
TU824624 other downstream 1438175 57513606 ~ 57515394 (+) False G725878
TU824625 other downstream 1438175 57513606 ~ 57515394 (+) True G725878
TU824655 other downstream 1479292 57554723 ~ 57555482 (+) True G725907

Expression Profile