RNA id: XM_021613089.2


Basic Information

Item Value
RNA id XM_021613089.2
length 1531
RNA type mRNA
GC content 0.47
exon number 7
gene id asph
representative False

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 57108203 ~ 57130512 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GCTGAGGGCGCATTCACTAAACAGTGGACGGGGTTGCTATGGGCTTCGGGTTATGAGGGCAGAGATTTGATTTCTATTGGGCCACCTTTAGTGCAAGAAATTGAGAGTGAAGCTCGTTAATTTTGAATTTGCACATTTCTACTTGAATTCAAGCAACTTCGAATAGCCATGGCCCCGAAGAAAAACGCACGAGGACACAAAATGAAAGAAGCCAAAGCCCAGCTGTCCAGTAAAAATGGCAAGAAGCCTGAGGTAGCAGGAGGAAGCTCCTTCTTCACCTGGTTCATGGTTCTTGCCCTCCTGGGCGTCTGGACCTCTGTGGCCGCCGTCTACTTCGACCTGGTCGACTACCAAGGCGTCATCGGTCAACTTTCGTCCTATGATGCTGATGGAGATGGTGACTTCGATGTGGAGGATGCTAAAGTACTGCTAGATGAACCTCGACCCGATCGGAAAAGAGCGAGACACAGAGCCAGCTTAATCGAACCAGAATCTCCAAAAACAAAGGTCAAGAAAAAAGAGGCGGCTACTGAGACCAAAGATGAAAATCCAGGACATGTTTCCAAGAGAAAAGCCAAAAAAGAAAACCCTCTTACCAAAGACGTGGGCTGGAAGCTGAGGGAGGCCCTGAACCAGCAGCTGGCCATCATCCATGAGCGATTGGAGGCCAAAAAGATTGCCAAGATGGCGCTGGCCGAGGTGAGGAACATCCTGgccagggagaaggagaaggtcCTAGGGGTGACGAGGGACGAGGTGGCAAAGAAGGCTAAGGTGGCAACGGCAGCTAGGATGGAGGACAAGCCAGAGAAGGGGGAGTTTAAGAAGGCCTTGGGCAAGAttaggagagacaaagagaaggagggagaaaataagaaagagggagaaaataaGAAACAGGAGCAGGGCAAGAAAGCTAAGAAGAATGCGACAAAGCCAGACAAGAAGTCAGTGAAAGAGGTGAAGGGTAAGAGGGTGGAGGTCCCCAAAGACGCCAAAAATAAAGAGTCCCCCAAAGCTGCTGCTAAAAAGCTCAAGATGTCTGATAAGGGGGTCCGGAAATGATGCTAAACTCTTCACACCTGCACTGATGTCGGTGATCTTTCACTCCCTCTGCTGACACAGATGTTAAAAGATTCAGGAGAAACACCACCTGTGAGAGGTCTCCAGTGACAGACCCCTGCGAATGGGAGTAGGAAACCCCATACTGTGCAGGACAGCCATTTCCGCAATGTATAGTGCATAGTGTTTTAGCCACTTCCTGCTTGTGGTAAAAATCATAATGCTGTCCTCTATAGAAGTATGAACTGGACAAGGAAAGGCGCCAAGAGGATGGCAAGGTGCTGTAAGCTTAGTTTCCGATGTGGTTTAGTTTTGTGTTAATTTACATCAGAAAATATAGCTTTATTTAAAGTCGCTAGACAAGATATTTGTAGAATTAGACAATGATTTATTTTGCATTTGGTGGAGAAGTGGATTTGAAAGGATCAGCTATGTGCTTGTTCTTTGTTAATAAAGTTGCTGGATTCTG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU824296 lncRNA upstream 82814 57008143 ~ 57025389 (+) True G725585
TU824292 lncRNA upstream 105283 57002684 ~ 57002920 (+) True G725581
TU824288 lncRNA upstream 117508 56990471 ~ 56990695 (+) True G725577
TU824265 lncRNA upstream 153022 56954975 ~ 56955181 (+) True G725554
TU824106 lncRNA upstream 323656 56783447 ~ 56784547 (+) True G725411
TU824329 lncRNA downstream 6320 57136832 ~ 57142701 (+) False G725615
TU824330 lncRNA downstream 6320 57136832 ~ 57142701 (+) True G725615
TU824550 lncRNA downstream 277562 57408074 ~ 57408412 (+) True G725809
TU824559 lncRNA downstream 287845 57418357 ~ 57418677 (+) True G725818
TU824612 lncRNA downstream 370021 57500533 ~ 57503590 (+) True G725869
XM_021613084.2 mRNA upstream 21588 57081546 ~ 57086615 (+) True LOC110530207
XM_036985763.1 mRNA upstream 28758 57045780 ~ 57079445 (+) True LOC110530206
XM_021613081.2 mRNA upstream 105642 56998428 ~ 57002561 (+) True LOC110530204
XM_021613076.2 mRNA upstream 440269 56663849 ~ 56667934 (+) False lhx8a
XM_021613075.2 mRNA upstream 440269 56663850 ~ 56667934 (+) True lhx8a
XM_036984514.1 mRNA downstream 209073 57339585 ~ 57359522 (+) False car8
XM_036984511.1 mRNA downstream 209073 57339585 ~ 57361813 (+) False car8
XM_036984512.1 mRNA downstream 209073 57339585 ~ 57361813 (+) False car8
XR_005052755.1 mRNA downstream 209073 57339585 ~ 57361813 (+) False car8
XR_005052756.1 mRNA downstream 209073 57339585 ~ 57361813 (+) False car8
TU824284 other upstream 123918 56983570 ~ 56984285 (+) True G725573
TU822550 other upstream 1389966 55710240 ~ 55718237 (+) False si:ch211-267e7.3
TU822189 other upstream 1648083 55459696 ~ 55460120 (+) True LOC110530939
TU821992 other upstream 1971572 55134030 ~ 55136631 (+) True LOC110530153
TU820675 other upstream 2438089 54624174 ~ 54670114 (+) True LOC118965528
TU824563 other downstream 338360 57468872 ~ 57477729 (+) True LOC110530213
TU824624 other downstream 383094 57513606 ~ 57515394 (+) False G725878
TU824625 other downstream 383094 57513606 ~ 57515394 (+) True G725878
TU824655 other downstream 424211 57554723 ~ 57555482 (+) True G725907
TU824799 other downstream 722500 57853012 ~ 57853632 (+) True LOC118965533

Expression Profile