RNA id: XR_005052755.1


Basic Information

Item Value
RNA id XR_005052755.1
length 2751
RNA type mRNA
GC content 0.48
exon number 11
gene id car8
representative False

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 57339585 ~ 57361813 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GGGCTGCTGGTGCTTAGAGAGAGTTGTGAAACTCTTAGCTGCTTGCACTGTGGGAGAGTCTACACTGCAGCCTggattcacacagagagagagagagttggaacAATCACTCTCTCCTATGTGATGGACTGACCCCCCCCTTCATCAGTATTTGGCGCTGAACCGCTGTACCAGCCCGTACTGCAGCACCTCACTGAAGACAGGCTCTCAAAGTCACTGGCATCTGACAGAAAACCCTTCCTACCACacaaagaaaggaaggaaggaagaaaacaATAAGAAGACAGATTAAAAAGACAGATAAGAACAAAAGCCAGAGTGTGACTTCAAATCAAAGCAAGTGTGTTAAGTGAGAAGACTTGTTCCATACTGCCACAGCCATGGCAGACAGTGTGATTGAGGAGTCAGACTACTACCCTGGGAAGGATGAATTGGACTGGGGATATCAAGAAGTAGGTAAAGAACTTAAAGAAGGTGTAGAGTGGGGTTTGCTGTTCCCTGATGCCAATGGGGAGTACCAGTCACCCATCAACCTGAACTCCCGGGAGGCGCGTTATGACCCTTTGCTCCTGGACGTGGGGCTAACACCCAACTACGTTGTGTGTCGGGACTGTGAGGTCATCAACGATGGACACACCGTACGCATCATGCTGAGGTCCAAATCAGTGGTAACTGGTGGACCGTTGCAAATTGATCATGAGTACGAGCTGCATGAGGTGCGCTTCCACTGGGGCAAAGAGAACCAGCGGGGCTCAGAACACACAGTCAACTTTAAGGCCTTCCCCATGGAGCTCCATCTGATCCACTGGAACACAACCTTGTTCAGCAGTGTGGAGGAAGCCCTGGGTAAGACGAACGGAGTTCTCATCATCGCTCTGTTTGTGCAGATAGGGAAGGAGCATCTGGGGTTGAAGGCCATAACAGAAGTGCTGCAGGACCTACAATACAAGGGGAAGACCAAGATCATACCGTGCTTCAATCCCAACACACTACTTCCTGACCCTCTCCTGAGAGACTACTGGGTGTATGAGGGCTCCCTGACAACCCCTCCATGTAGTGAGAGCGTCACCTGGATCCTGTACCGCTACCCACTCACCATCTCACAGTTACAGATAGAGGAGTTCAGGAGGCTCAGGTCCCATTTGAAAGGTGCTGATCTACCTGAGGGGAACGACGGGATGTTGGGAGACAACTTCCGCCCCTCTCAGCCCCTCAGCGACAGAACCGTCCGGGCTGCCTTCCAGTGACAAACCCCTTCCCTCCACGGGGGATCTTTAGCTCCACGTTTAACAGgtgtgctggagtcagagcagatccccaccagctgcaacctgttccataatcaagacctctacaaatagccctgccacttccacgctgccagatcgtaatctctgctcagtcagtctacgtttctagccgtttgttactattcagatcctgttgtgcctgttttccttgCCTGCCGCTGTTTTCCTCTCCACTACAGTTCTGCCCGCTGTGACTCtcgtccctgtctccagtcccacgtctTGTCATTCtactactctgtcctggattccccactctactacCCCCTTGGAATCCCCTCCGGACCGGCTTACTCTgtctcaacccctctcgctccagcctccgCACCCTCATCTGGTTTCCAGCAACCCGCCTGAGCTTCCCATGACCTgcactccatctcccccctgtgtttcaataaataccttggttatttcatcccagtctcctcgtcgGAGTCTGCTACTGGGTTCCACTCCGCGTAACAGCTACTGGACTTGGAGGGAGCTCACAAAGGCACGATTTTACTCTGTTGATGAAGGCAGCGCTGACAGACCAACCAGCTGGCTTCACCTGTGACCTGGAACATAGCCATTCGCTGTTGGCTGGTACAAGATGTATCCATGCTCTGGACGGAGAGACATGATTGGCTCTGATCCAATATCCTCACTAACAGTAGTATACTAGATGGAAGCGCTGCATTGGGCATGCATTCTTACTGGTGTGATAGTGGGGCTATTGGTGGAATGTAGTCCTTGTGATAGGATTTGTGCAGGCTTCATGCAGGTATGCATACTTAGCTTGGGGCATGTAATTGTACTGTCATGCAGGTTGTGTAATAAGTAGAAAAATGTGAATTAACACCTGTTCCTAGGGATTTTCAAAATATGGAAAataaatgtacagtacattatttaaaaaaaagatgcTGTTAAAACCGCACTGTTTCTCAGAATAGGAAACACTCTTAACAAGCAGAAACGTATGTAGTTCTGTATAATATACATGGGCAGGTCAGGTTCAATGACCTCAGGTCAGGTTTAATGCCATATAATCTCAGATGTCTCATAGGCTGATTTTTGTTGAGATATTTCCGTCAGCTTCTGGCTCCTGTCCTCGCAGTATTAAACGCAGTGTTTTTGTGCTTTTCGATATCTGCTTATCTAGCAATAGGAAGCATGGCAATAGACGATTAGACCACAGTGTGCCCTTTCTTGTAAAAACAAAGGAGACATCCATCAaaggtaaatgaccttttaaggGCTATAGACAACACAGTACAGCCCAGGGTTATAGGCTATGAAAATGAAACAATGAAGACTTGAATtttgttgtgatttttttttgttgacattttAATGTTCTGTAGTTCTTGTACTGACTAatgtgataatgatgatgatgatgataaagaTGACTCTTACTGTCACTTAACAATAAAGGTCAAACTGTTAGTAGTAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU824329 lncRNA upstream 196884 57136832 ~ 57142701 (+) False G725615
TU824330 lncRNA upstream 196884 57136832 ~ 57142701 (+) True G725615
TU824296 lncRNA upstream 314196 57008143 ~ 57025389 (+) True G725585
TU824292 lncRNA upstream 336665 57002684 ~ 57002920 (+) True G725581
TU824288 lncRNA upstream 348890 56990471 ~ 56990695 (+) True G725577
TU824550 lncRNA downstream 46261 57408074 ~ 57408412 (+) True G725809
TU824559 lncRNA downstream 56544 57418357 ~ 57418677 (+) True G725818
TU824612 lncRNA downstream 138720 57500533 ~ 57503590 (+) True G725869
TU824618 lncRNA downstream 144848 57506661 ~ 57507160 (+) True G725872
TU824634 lncRNA downstream 163033 57524846 ~ 57529724 (+) True G725886
XM_021613089.2 mRNA upstream 209073 57108203 ~ 57130512 (+) False asph
XM_036985771.1 mRNA downstream 59431 57421244 ~ 57478855 (+) False LOC110530213
XM_036985770.1 mRNA downstream 59433 57421246 ~ 57478855 (+) False LOC110530213
XM_036985769.1 mRNA downstream 59436 57421249 ~ 57478855 (+) False LOC110530213
XM_036985773.1 mRNA downstream 196215 57558028 ~ 57565135 (+) False LOC110530217
XM_036985772.1 mRNA downstream 196215 57558028 ~ 57572376 (+) True LOC110530217
TU824284 other upstream 355300 56983570 ~ 56984285 (+) True G725573
TU822550 other upstream 1621348 55710240 ~ 55718237 (+) False si:ch211-267e7.3
TU822189 other upstream 1879465 55459696 ~ 55460120 (+) True LOC110530939
TU821992 other upstream 2202954 55134030 ~ 55136631 (+) True LOC110530153
TU820675 other upstream 2669471 54624174 ~ 54670114 (+) True LOC118965528
TU824563 other downstream 107059 57468872 ~ 57477729 (+) True LOC110530213
TU824624 other downstream 151793 57513606 ~ 57515394 (+) False G725878
TU824625 other downstream 151793 57513606 ~ 57515394 (+) True G725878
TU824655 other downstream 192910 57554723 ~ 57555482 (+) True G725907
TU824799 other downstream 491199 57853012 ~ 57853632 (+) True LOC118965533

Expression Profile