RNA id: XM_036985772.1


Basic Information

Item Value
RNA id XM_036985772.1
length 3006
RNA type mRNA
GC content 0.45
exon number 10
gene id LOC110530217
representative True

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 57558028 ~ 57572376 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TCTATTGTGGTCAGTGACGCACCCCTTCTGAAGGCAGAGCCCGCATCAAACATGCAGCCTCCTGATTGGCTGAGGAGATTGTCAATTAAAAAGGGAGAGTTATCGGAAACAAATATGGCTACCCTGTCTGTTGGAGAGCCTCAAGAGATGGAAGTGGACCGGAAGGGAGAGTCAGAGGAGTCAGGAGATGATGAGACCAGGAGGAAGAGCATCAACGGGGAGGTAGACCTGAACCAGCCTCCTGCCACAGTTAAAGAGGAGTCTCCCGTTGATATGGATACCATAACCTTGGACCCAGAGGAAgagGATGTTGATCTTGTCCACTGTAGGATTGGGAAGATTGAGGGATTGGAGGTGTTGAGGAAGGCTAAGACGCTCTCTCTAAGGCAGAACCTGATCAAAAACATTGAGAACCTGGAGACGTTAGTGACTCTGAAGGAGCTGGATCTCTACGACAACCAAATCCGCAAACTTGAGAACCTGCAGACCCTCACAGAACTGGACCAGCTGGACGTGTCCTTCAATCTTCTGAGGAAGGTGGAGGGTCTGGAGCGTCTGACGGGGCTGAAGAAGCTATTCCTGCTGCACAACAAGATAAGCCACATCGCCAATTTGGACCATCTCACCGGCCTGGAGATGCTGGAGCTGGGCTCTAACCGCATCCGGGTAATTGAGAATTTGGACTCGCTGTCCTCCTTGACAAGTCTGTTTCTGGGCACCAACAAGATCACGCAGTTTCAGCATCTGGAGGGCCTACACAATCTGACAGTCCTTAGcatccagAGTAACCGCATCACCAAGATGGAGGGTCTGCAGGGTCTGGTCAACCTGAAGGAGCTCTACCTGAGTCACAATGGCATCGAGGTCATCGAGGGCCTGGAGAACAACAAAAAGCTGACAACTCTGGACATCGCAGCCAACCGGGTGAAGAAAATTGAAAACATCAGCCATTTAACAGACCTACAGGAGTTCTGGatGAATGATAATCAGATAGAGAACTGGTCAGATCTGGATGAGCTGAAGAGCTCCAAGGCCCTGGAGACGGTGTACCTGGAGAGGAACCCCTTACAGAAGGACCCCCAATACCGCAGGAAGATCATGCTGGCGCTGCCCACCGTACGCCAGATCGATGCCACCTTCATCCGCTTCTAACTGGCCCACGCCCACCGTGCCACATCTCGTACCCCCACCTCAGTGTCCCCCACCTTCCACTCACCGTCCTTCCCCTGCCACTGCAAAATGGATCTCCGCTCACTGCACTAATTCACCACAGACATACTGATACACACAGACAAGGGTTCCCTTTGTATAACATGTCTACCTAAATACACACATTCTGACCATCACTTTTCTCCTTAacgtctcacacacaaacacgtgcacgcatgtacacactcactcacactcaccaCCTGACCGATGCTATTGTGTGACCGCTTATTAATTTATTCCCAGAATTGGACTGGAAATGGGCTGGTAGGAGTGGGGGCTGCAGGGATGTCAAAAAGAccccatctttccccactgtcctccctccctcttttctccttctctcctcccttttcctTTTGCATGTGGAGTAGGGAACGATTGCCCTGCCTGATTGGCCTTTGTCtggatgataaaaaaaaaagaaggcaggctgttttctctttgttattGAAATTGCACTGCACTTGGCAGAGAGGGGGGTGAGTGGTTTTTTAGGAAGGTCTACTACACTCAACAGATATCAAagtcttattttttttatattaaagAATTTAAAATGATcaaatgtgtttaaaaaaatacaaataatgtgGCCGTATGATACTTAGTTTGCCATAGGGATATTTAGAGCATCACAATGTTGGACTGCTTGCATATTGCAGCTGCATTACAGACACTGCCTCGTGCACGTGGTGTCTTGTTCAAAGTGAAGGCTTGAACTTAATTCACGCCCTGGCACATCAAAGAAGCGCACTCTTTGTGCTCTATCTGAAACTGGTCTGTCTCAGGCCAATAAGGCAAATGTTCTGAATGCATTGTCACCCGAAGGAACAGACCAGGGTTTTTTTTCATTGATTTCTTATAAAACATATTTGTTTTGAATGGTAATCATTCGGTAAACATCCCCAGGAGATCGTCTGCTTTTGATTGTAAATAATCTAATTCTTAGACTGACTCAACATCCTAATTCAAATGAATCTGCAGTCTGAGCTGTTAATCCATATGtcaatcttgctgctgtgaaATGCAACTAACGTTCAGTGATGGTGGTATTCAGCGCTTCTTTCTTTTCAGGCCATGACCCTCAAATGTTTTAAGATAATGTAAAGACAAATATGACAATCTGTTATGATATTTCTAAGTCAATAGCCCATGCATGTATGGAGTCACCTACAGTTGAACACTTACAGGGAAAGTTTAACAGAAGTGAACTGTTTGTGAACAGAAATGGGCTCCTATGACCTATTAACCTGGATCAGTGGAGTGTGTCTGAGTTAAGGTATGTAGAAGGGAAGGAGTGTTTGTGGTGTAAACCACTTTTAACCACATTGCTCAGGACCTTACTATTGCCAATCAATGGACCAACGGGCTCAGAATTtgcccctaaccacagatctaggatcagttaacCCTTCTGTACCCCCAATCAGATTTGAACTTTAATAGTGTAATGACCCCCCTATCAGTGGTTAGGGGAAAATGTATATTCCCACCTGCAGAGTGAAGGTGGCCCATACAACTGGGGCTTATTCAAGAGGGTGCAACATTTTAGAATGTTACAGATAAAAATGCAATGTATAGAATTTCAACTATTGACTCCCTTTGCCAAACAAGTTGGCAGTTCTATACATGACTTTTGTATCTGCCCCACTAGTCCCAGTCCCTCAGATGGGTTCATAAAACAATGCCACACAACTCACTTGTATTTTTTGCCTTGTTTTTAGTCAAGCTTGGTAGACTGTTCTTGAACTGAATGTATTATAAAATACTAAATAATAAAGTTACTTAAATTTA

Function

GO:

id name namespace
GO:0005634 nucleus cellular_component

KEGG:

id description
K17550 PPP1R7, SDS22; protein phosphatase 1 regulatory subunit 7

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU824654 lncRNA upstream 4884 57552838 ~ 57553144 (+) True G725906
TU824653 lncRNA upstream 8010 57549790 ~ 57550018 (+) True G725905
TU824643 lncRNA upstream 18480 57539293 ~ 57539548 (+) True G725895
TU824640 lncRNA upstream 21564 57536238 ~ 57536464 (+) True G725892
TU824634 lncRNA upstream 28304 57524846 ~ 57529724 (+) True G725886
TU824620 lncRNA downstream 9280 57581656 ~ 57581766 (+) True LOC110530216
TU824660 lncRNA downstream 11883 57584259 ~ 57584527 (+) True G725912
TU824677 lncRNA downstream 25478 57597854 ~ 57600762 (+) True eif4g1a
TU824701 lncRNA downstream 105475 57677851 ~ 57678662 (+) True G725949
TU824721 lncRNA downstream 150468 57722844 ~ 57723061 (+) True G725969
XM_036985771.1 mRNA upstream 79173 57421244 ~ 57478855 (+) False LOC110530213
XM_036985770.1 mRNA upstream 79173 57421246 ~ 57478855 (+) False LOC110530213
XM_036985769.1 mRNA upstream 79173 57421249 ~ 57478855 (+) False LOC110530213
XM_036984516.1 mRNA upstream 196215 57339596 ~ 57361813 (+) False car8
XM_021613104.2 mRNA downstream 275 57572651 ~ 57582193 (+) False LOC110530216
XM_036985774.1 mRNA downstream 25459 57597835 ~ 57625254 (+) False eif4g1a
XM_036985776.1 mRNA downstream 25459 57597835 ~ 57625254 (+) False eif4g1a
XM_036985777.1 mRNA downstream 25459 57597835 ~ 57625254 (+) False eif4g1a
XM_036985778.1 mRNA downstream 25459 57597835 ~ 57625254 (+) False eif4g1a
TU824655 other upstream 2546 57554723 ~ 57555482 (+) True G725907
TU824624 other upstream 42634 57513606 ~ 57515394 (+) False G725878
TU824625 other upstream 42634 57513606 ~ 57515394 (+) True G725878
TU824563 other upstream 80299 57468872 ~ 57477729 (+) True LOC110530213
TU824284 other upstream 573743 56983570 ~ 56984285 (+) True G725573
TU824799 other downstream 280636 57853012 ~ 57853632 (+) True LOC118965533
TU826058 other downstream 784663 58357039 ~ 58358135 (+) False G727161
TU826259 other downstream 1074483 58646859 ~ 58674005 (+) True G727348
TU827009 other downstream 1408555 58980931 ~ 58981271 (+) True G728057
TU827614 other downstream 2188099 59760475 ~ 59766358 (+) True LOC110530248

Expression Profile