RNA id: TU824620


Basic Information

Item Value
RNA id TU824620
length 111
lncRNA type sense_over
GC content 0.43
exon number 1
gene id LOC110530216
representative True

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 57572651 ~ 57582193 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CAAGTTATGGCTCAGACACTATTAAGGATCGATTGAGTTAGCCTGCCCCAGAACAGGTTGGTTCTAAAAGGTTTGTTGCCTTTgaaatttacctggctaaaacGTGAGCCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU824654 lncRNA upstream 28512 57552838 ~ 57553144 (+) True G725906
TU824653 lncRNA upstream 31638 57549790 ~ 57550018 (+) True G725905
TU824643 lncRNA upstream 42108 57539293 ~ 57539548 (+) True G725895
TU824640 lncRNA upstream 45192 57536238 ~ 57536464 (+) True G725892
TU824634 lncRNA upstream 51932 57524846 ~ 57529724 (+) True G725886
TU824660 lncRNA downstream 2493 57584259 ~ 57584527 (+) True G725912
TU824677 lncRNA downstream 16088 57597854 ~ 57600762 (+) True eif4g1a
TU824701 lncRNA downstream 96085 57677851 ~ 57678662 (+) True G725949
TU824721 lncRNA downstream 141078 57722844 ~ 57723061 (+) True G725969
TU824758 lncRNA downstream 185060 57766826 ~ 57775092 (+) True LOC110530223
XM_036985772.1 mRNA upstream 9280 57558028 ~ 57572376 (+) True LOC110530217
XM_036985773.1 mRNA upstream 16521 57558028 ~ 57565135 (+) False LOC110530217
XM_036985771.1 mRNA upstream 102801 57421244 ~ 57478855 (+) False LOC110530213
XM_036985770.1 mRNA upstream 102801 57421246 ~ 57478855 (+) False LOC110530213
XM_036985769.1 mRNA upstream 102801 57421249 ~ 57478855 (+) False LOC110530213
XM_036985774.1 mRNA downstream 16069 57597835 ~ 57625254 (+) False eif4g1a
XM_036985776.1 mRNA downstream 16069 57597835 ~ 57625254 (+) False eif4g1a
XM_036985777.1 mRNA downstream 16069 57597835 ~ 57625254 (+) False eif4g1a
XM_036985778.1 mRNA downstream 16069 57597835 ~ 57625254 (+) False eif4g1a
XM_021613106.2 mRNA downstream 16070 57597836 ~ 57625254 (+) False eif4g1a
TU824655 other upstream 26174 57554723 ~ 57555482 (+) True G725907
TU824624 other upstream 66262 57513606 ~ 57515394 (+) False G725878
TU824625 other upstream 66262 57513606 ~ 57515394 (+) True G725878
TU824563 other upstream 103927 57468872 ~ 57477729 (+) True LOC110530213
TU824284 other upstream 597371 56983570 ~ 56984285 (+) True G725573
TU824799 other downstream 271246 57853012 ~ 57853632 (+) True LOC118965533
TU826058 other downstream 775273 58357039 ~ 58358135 (+) False G727161
TU826259 other downstream 1065093 58646859 ~ 58674005 (+) True G727348
TU827009 other downstream 1399165 58980931 ~ 58981271 (+) True G728057
TU827614 other downstream 2178709 59760475 ~ 59766358 (+) True LOC110530248

Expression Profile