RNA id: XM_036985774.1


Basic Information

Item Value
RNA id XM_036985774.1
length 7346
RNA type mRNA
GC content 0.57
exon number 33
gene id eif4g1a
representative False

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 57597835 ~ 57625254 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GTACCCATGCGACTTACCAGGCGCACGGTCCGGCCGGCTCCAGCGGACGAGAATGCATCGCAACATGGCCTCGCTGTAAACCGAACGAAACCCCAGTAGATTGTGTATTTGACCGGCAATCCGTCACCATCGGCGCCTTGATCATGGACCTCCGGTCCAGAGGCTTTTTCCGGAGGCATTGGAGTTGTGAATAATAATCTTCAAgtgctatattaatacattttatgCCCTACTCACTTTTGCACGCTCCATGGATTTAAAGAACAAGTGACAGCAATAGCACTCACCCCAATAAGGGCACCACTTTCCATTTGGAGGAGAGGACAAGAAACTACACTACAATTTTTAAGTAACGGACGATCGGGTGTAATATATATTTTCCACTGTTGATTCCAGTCTTCGCTCATATCCCTCACAGACACAATTCATAACCGGTAAGAATCCAGTGTGCGCTACCTGCTATCGATCTTTGAAAGACAATTGGATGAAGGCCCTGCTCTTGTCGGTCCATTTACAAGaTCGGCTGGCAAGTCAGCGCCACCCTAATGCAGAACCAAGTGAAATGAACAAACCACCGCAGCCTATAACGGGACCCACCTCTGTCccacacccctccccctcccctggaCTGACACAGgCTGCCTATGCCCCAGGTCAGCCCCCTTCTCTCGTCTTCGCCACCCCACCACCTCAACAAATGAACTCTTCACCGCAACCGCGACAGTTCGCCGCAGGGCCTCGTGCTTTACACCAACAGGGCGGATACAGGGCACTGCAGccctACTATGCCAACAGGGCCACCATGTCCACCAGTGCCCCCCGGGTCCAGACCAGCAGCGGGCCTCGTCCGGTGGGTCCCACCCACGTCTACCAGCCCAGCTCCCAGATGATGATGATCCCTGGGCAGCAGCTGTCCTTTGCTGGCTCCCCTCAGGGCTACTTCATCCCCCCTGGACAGtaccGGGCTCCCTACATGCCACCCAGTCCACAATACCCTGTCACCAGTGGCACGGCAGGCTTCTACCCAGGAACCAGCCCGGCTGAATACCCCACCTATGAGCCCTCTCTGGCTGCGAGGGAAaggcgggggggtggggggagagggggcgGGCGAGAGAACGGGCGTCTCTCTCTCCACGGTGCTCCTCTCACCTCCCAGCGCTACCCCGCAGGTGCCTACTACCCGGCCCAGCCCCAGTACAGCCACACACCCCCTGTCCAAACGGCGCCTGTCATGTTAAGCCCCGCCCAGCCCCAGCAACAGGCCCTGCCCCCTCAGCCGCCGCCGAGCCAACCACTGGCACCCAAGAGGGAGCGCATAGCGATCAGAATACGAGACCCCAACCAGGGGGGCCGCGATATCACAGAGGAGATCATGTCCGGGGGAAGGGCCACCTCCACCCCCCCATCACAGTCCTCCACTACAGAGGGAGAAGGTCCTTCCCAGACCAACGGAGAAGTTACAAAGCCCGTCACCATGATGACGAGAACAGATGACAACACGGAACCTGCAGAAACAATGGCCGCCATGACCCCGCCTCCTGCGTTGGTGACCCCAGAGCCTGCCACCGCCACCGTCTCAACTGAGGCCAAGCAGGAAAAAGATAGCCAGGCAGCCCCACCTACCGAACAGGTCGTCAGCCAATCGGCTGTCCCAACGGCTGTGGGGAAGGCCGAGGAGGCCATTCCGCCAGAGGAAGACCAggcccctcccccatccccctcgCCCCCGGCAGCTCCTACCTCCGTTCCCCCTGCAGAGGTGCAGACACCACCCCCCATCACCACCATCGCTCAGGTCAGTGACACGGTGGATGCCGGTGTGACCCTGGCGGGAAAGGCAGTGACTCCTGAAGCTCCTCCCATTGAGGAAGAGCCTTCGGCCGCCCTAGCAGCCGTCGAGAAGCCTCCTGCTCTGGTAGCGGagaaagaggaggcagagaataAAAAGGAAgaagtagtggtggaggaggaggagattgtAGAGAAGGTAAAGGAGGAGCCTGTGCTTACCACCAAGCCAGAGGTAGTGGCGCCTGTTACGGTGGCGGTCGCTAAAGAACACACTAAGCCCGCTCCCCGACCTTTGACCCCCGTCGCCACAGCAACGATCAAACACTCTGCCCCGGCCGTGAAGCCGGTGGTGTCTGTGGAAGCTCCCACTAAAACTGAGAGCGTGGTCGAGCCGACAGCGCCGAAACAGGAAACTGCTGCTGCTGTGCCCGTGTCTGCCCCCGTTCCTGCCGTCACTCCCTCTGTCCCGGAGGCAGAGCCCGCCATGGCCCAGAAGAGGGAGGCGCAGACGCCCCTGTCCAACGGCCTCCCCCAGGAGTACCCCGACGAGGTAGACGCCCCCGTGCCCGCACAAGAGCGAACTGCAATGCCCAACACCGAGCCTGCCGTTCCCACACCTCAGGAAACTGCTACCCTTGCAGATGCTGCCGtggcagaggagggggagaaaggggaagATGCAGCCACGGTGCCCTTGGCCAGTAGCCCTTCAGAGGACACGTCTATGCAAGCTGCTGTGTCTGTGCCAAAGAAGAAGAGGAACATGAAGGAGCTGAACAAGAAGGAGGCCATAGGAGACATGCTGGATGCCTTCAAAGAGGAGAAGGAGGCGGCGGCTGCCCCCGAGCCCTTGTCCACTCTGGCGGAGCCCAGCCCTGTGGCCCCTCCCCCTTTGGCGACCGCCGACGCGCCAGATGAGAcctgggaggagaaggaggacaagCAGAACGCCGACACGCCCCCGCTCAAACCAGGCGACCTCAAGTACCAGTACAAAGGAGAGCAATGGAAGCCTATCGACCCGGAGGATAAGAAGAGGTACGACAGGGAGTTCCTGCTGGGCTTCCGGTACATTGGTGCCAGCATGAACAAGCCCGAGGGCCTGCCTCTTATCTGCGATGTGGTGTTGGATAAGgccaaTAAGACCCCCATGCGCCCAGCGGAGCCGGGTCGCAACATGATGAACGCCGGGCCAGACTTCACCCCCGCCTTCATGGGTAACCTGGGCAGACAGTCCTctggaggtgggggagggggaccACGGGGCCCTGGAAGGGACCATATGGGACCCCCAGGACCCCGGCGCTCCCAGCAGGGCCAGCGCAAGGAGCCCCGCAAGATCATCATCTCCTCATCGCTAGGCGGTGACGTGGAGCTCAACAAGGCAGAGAAAGCCTGGAAGCCCGCGGTGAAGATGGCGGGGAGCCGCGGGACCGGCCccgaggaggaggagagcgacGACCCCGAGCAGGCCAAGACCCAGGAGCTCTTCAAGAGGGTCCGCTCCATCCTCAACAAGCTGACCCCTCAGATGTTCCAGCAACTGATGAAACAGGTCACAGAGCTGACCATCGACACGGAGGAGCGGCTGAAGGGAGTGATCGACCTCATCTTTGAGAAGGCCATCTCCGAGCCCAACTTCTCCGTGGCCTACGCCAACATGTGCCGCTGCCTTATGGGGTTGAAAGTGCCCACCACAGACAAGCCGGGAGTGACTGTGAACTTCCGTAAGCTGCTGCTGAACCGCTGTCAGAAGGAGTTTGAGAAGGACCAGGACGACGATGTGATCTTTGAGGCCAAACAGAAGGAGATGGAGGCCGCAAAAGAGGAGGAGAAAGCCGGTCTAAAGGCGGAGCTGGAGGAGGCGAAGGACAAGGCGCGCCGGCGGTCGCTGGGCAACATCAAGTTCATCGGCGAGCTGTTCAAGCTGAAGATGCTGACGGAGGCCATCATGCACGACTGCATCGTCAAGCTGCTGAAGAACCACGACGAGGAGTCGCTGGAGTGCCTCTGTAGACTGCTGTCCACCATCGGCAAGGACCTGGACTTTGAGAAGGCCAAgCCCCGTATGGACCAGTACTTTGCCCAGATGGACAAGATCATCAAGGAGAAGAAGACCTCGTCCAGGATCCGCTTCATGCTGCAGGACGTCATTGACCTCAGACGGagTGGCTGGGTGCCCCGGCGAGGGGAACAAGGCCCGAAGACCATAGACCAGATCCACAAGGACGCTGAGCGAGAGGAGCAAATGCAGCTGGTCAAGGTCCAACAGCAGCTTATGTCAAGGAATGacagtggtggtggaggaggtggtggtggaggaggtggtggaagaggaggaggaggaggtggtggtggtggaggaagagACGGCAGGGGGGGAGACCGAGACAGAGGAGGAAGGGATCAGGGGGGCCGTGGGGGCCAGCACGGCGGCCAGGGGGCTAGgggcagccagccccaggacgaAGGCTGGAACACAGTGCCCATCTCCACCAAGAACAGACCCATCGATACCAGCCGGCTCAGCAAGATCACCAAGCCTGGTGCTCTGGACTTCAACAACCAGCTCCTTGCGCCCCAGCTCGGGGGTAAGGGCATGTGGGGCAGCTGGGGCAAGGGCAGCAGTGGAGGCACCACAGGAGCCAAGCCTGCCGCCGGAGCTGAACCGGCAGCGGAGACTGGCCGTCCGGCCACTGGCAACCGTTTCTCTGCCCTGCAGCAGTCTGCTCCACCAGCGTTGTCCTCGGACGCTGACCGCAGGGTACCCCAGAGGTCCAGCTCCAGTCGTGACCGCGGCGGGGACCGGGACAGGTTCGACCGCTTCGAGCGGCGCGACAGTAGTCGCGACGCCCGCCCGCCTGTCACCAAGCGCAGCTTCAGCCGCGAGACAGAGGAGCGTAGGAGCGATAGTCGCACCCCTACGGAACCCCCCGTCCGGCGCGTAGCCAGCATGTCTGACGACCGGAACAGAGGCAGCCGTGACCGGGGAGGCAGCGGTAGCCGGGACAGGGCTCCTAGCAAGGAGGCTGTTGTGAAGCGTGAGACAGGCCCCACCCTTCCCCCCGCTGCTCCGGCCAAACCGGCCATGACCGAGGAGGAGCTGGACAAGAAGTCCAGCGCCATCATCGAGGAGTACCTCCATCTCAACGACatgaagGAGGCGCTGCAGTGTGTAGGGGAGCTGAACAGCGCCCCGCTGCTCTTTGTGTTTGTGCGGAACGGCCTGGAGGACACTCTGGAGCGCAGCGCCATCGCCAGGGAACGGATGGGCCTGCTGCTGCACCAACTCCTCAAGGCCGGCACCCTGCCCACAACACAGTACTACAAgggGCTCCAGGAGATCCTGGAGGTGGCTGAGGATATGGCCATAGACATCCCCCACATCTGGCAATACCTGGCTGAGCTCATCACCCCCATGCTCCATGACGGAGGCATCCCCATGGGACAGCTCTTCAGgGAGATCTCCAAGCCCCTGGTTCCCCTGGGTAAGGCTGGTCTGCTGCTGGTGCAGATTCTCCACTTACTCTGCAAAGGAATGACCCATAAGAAGGTGGGTGGTCTGTGGACGGAAGCAGGGCTCAACTGGAGAGACTTCCTGCCAGAGGATGAGGATGTCAATAAGTTTGTGACTGAACAGAAAATTGAGTTTACCCTGGGGGAGGAGTCGGGTGAGACCAATCAGAAGAAGCCCATGAGCGGGGAGGAGCTTAGCAAACATCTGGACAGACTGATCCAGGACAGGGCTAACAACCAGCGCATCAGAGACTGggtcgagGCCAACCTGGACGAACAGCAGGCGGCTGCCAACCAGTTTGTGCGCGCTCTGATGACCTCCATTTGCCAGTCAGCTGTTATATGTGAGAACCCGTACAAGGTGGACGTGGAGCAGATTACCCAGAGGGCCAAGCTGCTGCAGCGGTACCTGAGTGACGAGCATAGGGAGCTGCAGGCCCTTTACGCCCTCCAGGCCCTCATGGTGCACATGGAGCAACCGGCCAATCTGCTGCGGATGTTCTTTGACGCGCTGTACGACGAGGACGTGATCAAAGAGGAGGCCTTCTACAGGTGGGAGTCCAGCAAAGACCCCGCAGAGCAGACCGGCAAGGGCGTGGCCCTTAAGTCGGTCACCGCCTTCTTCACCTGGCTCCGCGAGGCCGAAGAGGAGTCCGACAAGGACTAAATGTCCTCTCTAATACCACCACCTATGGCTAGGGAGGTGTATTGCAAGGGGAGCCCGAGGAGAGAATTGGACTCTGTGGCCCTTTTTTTTTAATGTGGCGGACTGATATCGATCCTCAACAAGGCTTTTTAGAGAGGGACCTGACATGCAAtcactttctctcttctctctcactctcgctcactTCCTCATTCTCTTTTCCCTCTTTTGTGATGGCGTGTGTCCGCCGAAAATGAAATAAATGATTGAGACGGATTTTGCTTGTGTAAACGCGTGGAATAACTACTACGGTCACTGCGTATAAAACCCTTTTGACTTGTTGTTCTCGAGAAAACAATGACAAACCAACACGCTGCTCTTTGTGGTTGTAGACAAAATTATATTATGCAACATACTATATGACACGCAAACGCATAGAGACAATGGTAGAGGTGTCATGTAGCATGTTTTTCCCTTGGAGTGGGGTATCATGCCATGCGTGTGTGTGACGTCCGATCGAACACAGAGCTCTGTCttctctttttttttgtgtgtgtgtgtgcccagcaTGGTTGAAGTGTGTTTCTTTTAATGATGTAGACGAGGTATGTTTGCTGATCAGCTGACATCAAGCGTATGTTGCCGACCTATAGAGGCTCTGAATGGCTTTCTGAGCGACGGTTCTTTTCCTTTTTTCAACTTCCTGTTTACCGCAGTACTGGGACTTTGAGGACAGAAACAAGATGGGGGATGGATTGTGACCTTTGACCATTAGCCTCTGACCTTGGCTACTGGAGGACGGTGGGGGTCTTCTATATGCTTCCTTAAAGCCTACCTTTCACTTCCTCCCCCAGTAGTCAATCCTGACTGAGATACTGCGTCTTTTACCTCTCCTGTAGTTACATGATGAACTGTTGGGTGCGTTCTCTCTCGACCCCTGTCGAATGAGAAAACAAACCCCATAACTAGAGGACTCCTTAATGACAAAAATCACCATTAAAACTTGAAACCTACAGAAATCAACTTGATGAAATAAGAAAAACAGAAATGATCCGAAAGCCTTTTCTACTCTAAGTGGAATCACATTTCAGGAGCGTTCTGTACATATATATtaaagttgttttttttgtcagttttatttttcagaaataataaaaataaattactGATGTAATGTAAACTATAAAATGCTGTATCATTTTCCAACAGAAGTGGCAGTTTGTCCAGATGCAGAGAGGGGTGCTTTAGGTCATCCATTGATTAGTTTTATTGGACTTTTGTAAATATTTTGTTGCTTTCTTTATTATTTAAGGAATTACTGCTTCTTTTTGCATCATAAACTGGAAAAGATGAGGAAACCGAAAATTGCAAATAAAAGACTTATCAAGTT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU824660 lncRNA upstream 13308 57584259 ~ 57584527 (+) True G725912
TU824620 lncRNA upstream 16069 57581656 ~ 57581766 (+) True LOC110530216
TU824654 lncRNA upstream 44691 57552838 ~ 57553144 (+) True G725906
TU824653 lncRNA upstream 47817 57549790 ~ 57550018 (+) True G725905
TU824643 lncRNA upstream 58287 57539293 ~ 57539548 (+) True G725895
TU824701 lncRNA downstream 52597 57677851 ~ 57678662 (+) True G725949
TU824721 lncRNA downstream 97590 57722844 ~ 57723061 (+) True G725969
TU824758 lncRNA downstream 141572 57766826 ~ 57775092 (+) True LOC110530223
TU824789 lncRNA downstream 206135 57831389 ~ 57836550 (+) True G726031
TU824805 lncRNA downstream 232972 57858226 ~ 57859867 (+) False G726045
XM_021613104.2 mRNA upstream 15642 57572651 ~ 57582193 (+) False LOC110530216
XM_036985772.1 mRNA upstream 25459 57558028 ~ 57572376 (+) True LOC110530217
XM_036985773.1 mRNA upstream 32700 57558028 ~ 57565135 (+) False LOC110530217
XM_036985771.1 mRNA upstream 118980 57421244 ~ 57478855 (+) False LOC110530213
XM_036985782.1 mRNA downstream 7128 57632382 ~ 57641113 (+) False fam131a
XM_021613115.2 mRNA downstream 7128 57632382 ~ 57641650 (+) True fam131a
XM_021613117.2 mRNA downstream 71760 57697014 ~ 57700551 (+) True LOC110530222
XM_021613119.2 mRNA downstream 141397 57766651 ~ 57798129 (+) False LOC110530223
XM_021613118.2 mRNA downstream 141398 57766652 ~ 57798129 (+) False LOC110530223
TU824655 other upstream 42353 57554723 ~ 57555482 (+) True G725907
TU824624 other upstream 82441 57513606 ~ 57515394 (+) False G725878
TU824625 other upstream 82441 57513606 ~ 57515394 (+) True G725878
TU824563 other upstream 120106 57468872 ~ 57477729 (+) True LOC110530213
TU824284 other upstream 613550 56983570 ~ 56984285 (+) True G725573
TU824799 other downstream 227758 57853012 ~ 57853632 (+) True LOC118965533
TU826058 other downstream 731785 58357039 ~ 58358135 (+) False G727161
TU826259 other downstream 1021605 58646859 ~ 58674005 (+) True G727348
TU827009 other downstream 1355677 58980931 ~ 58981271 (+) True G728057
TU827614 other downstream 2135221 59760475 ~ 59766358 (+) True LOC110530248