RNA id: trnag-ucc-2


Basic Information

Item Value
RNA id trnag-ucc-2
length 72
RNA type mRNA
GC content 0.56
exon number 1
gene id trnag-ucc-2
representative True

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 57928375 ~ 57928446 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

gcgttggtggtatagtggtgagcatagctgccttccaagcagttgacccgggttcgattcccggccaacgcA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU824831 lncRNA upstream 25706 57901514 ~ 57902669 (+) True G726063
TU824741 lncRNA upstream 34018 57893810 ~ 57894357 (+) True G725988
TU824738 lncRNA upstream 50623 57876825 ~ 57877752 (+) True G725985
TU824815 lncRNA upstream 52099 57874589 ~ 57876276 (+) True G726053
TU824813 lncRNA upstream 60968 57866178 ~ 57867407 (+) True G726051
TU824938 lncRNA downstream 140269 58068715 ~ 58069350 (+) True G726165
TU824957 lncRNA downstream 169584 58098030 ~ 58098854 (+) False G726183
TU824959 lncRNA downstream 169584 58098030 ~ 58098854 (+) False G726183
TU824960 lncRNA downstream 169584 58098030 ~ 58098854 (+) False G726183
TU824963 lncRNA downstream 169584 58098030 ~ 58098854 (+) True G726183
trnam-cau mRNA upstream 490 57927813 ~ 57927885 (+) True trnam-cau
trnai-aau mRNA upstream 5752 57922550 ~ 57922623 (+) True trnai-aau
trnap-agg-8 mRNA upstream 12304 57916000 ~ 57916071 (+) True trnap-agg-8
XM_036985787.1 mRNA upstream 73958 57850799 ~ 57854417 (+) False LOC118965533
XM_021613123.2 mRNA upstream 116948 57805385 ~ 57811427 (+) True LOC110530227
XM_036985801.1 mRNA downstream 3849 57932295 ~ 58089891 (+) False LOC110530231
XM_036985799.1 mRNA downstream 3852 57932298 ~ 58136177 (+) False LOC110530231
XM_036985798.1 mRNA downstream 3852 57932298 ~ 58136178 (+) True LOC110530231
XM_021613129.2 mRNA downstream 237201 58165647 ~ 58268383 (+) False LOC110530232
XM_036985802.1 mRNA downstream 277146 58205592 ~ 58268383 (+) False LOC110530232
TU824799 other upstream 74743 57853012 ~ 57853632 (+) True LOC118965533
TU824655 other upstream 372893 57554723 ~ 57555482 (+) True G725907
TU824624 other upstream 412981 57513606 ~ 57515394 (+) False G725878
TU824625 other upstream 412981 57513606 ~ 57515394 (+) True G725878
TU824563 other upstream 450646 57468872 ~ 57477729 (+) True LOC110530213
TU826058 other downstream 428593 58357039 ~ 58358135 (+) False G727161
TU826259 other downstream 718413 58646859 ~ 58674005 (+) True G727348
TU827009 other downstream 1052485 58980931 ~ 58981271 (+) True G728057
TU827614 other downstream 1832029 59760475 ~ 59766358 (+) True LOC110530248
TU829329 other downstream 3112122 61040568 ~ 61042129 (+) True G730206