RNA id: XM_036985801.1


Basic Information

Item Value
RNA id XM_036985801.1
length 2539
RNA type mRNA
GC content 0.57
exon number 9
gene id LOC110530231
representative False

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 57932295 ~ 58136178 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GAGAGTGAACGCGTGTGCATAGCTTCGGAGAGAAGCGCATGGCTTGGGGGAGAGAAGTATGCACGCAGTCGAACAGCGCCTGTTGAGTGTGGGACGTCTACCAATCTTCGTCTACTACAATaccgtctctcccctcctcaagacAAGATCATATAGGCTCAGTGTGGAAGGGCCTTTATGCATTAAAACCAATAATGTGAGAACCCGATGCAGACCTCGTGTCATGGACGTTTAATTGTAACAACAGCTCCATTTTATTTGTGTCGTACATTTTCTTAACCGGCGGTGAAATCATCGATTTACACTAACCTACTGATACCTGGATTGAGATGCGGCAATGTTCCGAGCAATATGCACACGTGTAAACTTCTGCTGGATTTGGCTGGCAGTTCTGTTTCTGCTGAAAGTAGAGGATGTTGGCGCGTACAGCTGTCATGAGGTGAAGACCGCTTTCCAGGTGCGACAGATCGGTCCGCTGAAGTGGGTACCGGAGACACCTGGaacagATGTGGACCTGTTGGTGTGTAAGCACCAGGGCCCGTCCTGCTGCACCCGCAAGATGGAGGAGAGCTACCAGGAGGCGGTGAGACGAGAGACCCTCCAGAATGTCCGCTCCTACAGCTTCGAGCTGAAGTACCTCATCTCCGGCCACGCCACTGCCTTCCAGGacaCCTTCCAGTATCTGCTCTCCTTCTCCCAGGGCCACCTATCCTCCCTGCTAGAGGACACATACTCGCCCCTCTCCCGGGAGGCCCTCCCCCATGTCAACGCcctgttctcctccctctccctctacatccGCGGACACAACCTCTCCCTCGAAGCTGCCGTGGCCCGTTTCCACGACAACCTCTTCCCGCTCGTCTACGGGCGCCTGGTCAACCCGGGCGTGGGCGTCCAGGGTGGTTTGTCCGGTGAGCGGGGCGAGTGTCTCCGCGCCACACGGCAGGACGTCAACCCATTCGGCCCTCACCCCGAAATGCTCGCTCAGGAATTGGGGCGCACTCTGGGCGCCGGGCGAGCCTTATCCCTGGCCCTCGCCGAGGGCACCGAAGTCATGAACGCCACCGAACACGTTTCCTTCACCAAAGAGTGTTTACGGGGCTTGACCAAGATGCAGTACTGTTCGCACTGCCGTGGGCTGACGCTGATCAAGCCGTGCGTGGGCTACTGTCTGAACGTGATGCGCGGGTGCTTGGCGAGCGTGGCCGAGCTGGACGGGCCGTGGCGGCGGTATGTGGCGGCTCTGGAGGAGCTGACCAATGCTGTGGCCGGACAACACAGCCTGGAACTGGCCCTGCTTGGAGTCAGGGGGCACGTGAATGAGGCCATACTACACGCTCAGCTCCATGGGCCCACGCTGACCGCTACGGTGGACAAAGTGTGTGGTCGGTCAGCCAAGGAGCCCCGCACCAGCGTCCACCCTGACCCCGCCCCGGAGGTCACGACCTCCACGGTGACATCATCGACCGTCCCTCCCTCTGaccccccctccatccccccaccAGAACAGCTGATGGGACAACTTGCCCACCTGAGGAGTTCATTCCCCCTGAAACCCTCCAAGAACGATAAACCTAGAAGTCTGAAAAAGATCTCTAGGGAGTTTCTGAGCTACATCCAGCGCTATAAGTCATTCTTTGCCGTGCTTCCGGAGATGctgtgtgagggagagatggtggtGGACGACTTTACCTGCTGGAGCGGAGACGACGTGGTGGAGAGttatacAGGCAGAGTGGTGGGGAACGGTCTCCAGGCCCAGAAGCAGAACCCCGAGGTCAAAGTTCGCAGCCCAAACCCCGAACTGGCCGAGGTGAAGGAGAGGCTGGAGCGCTTCAACCAGGAGATTCAGGACATGCTGCCAGGGCTGGGCCAGAGCGAGTCCTGGGGGGAGCTGGGTAGTGGCGACACAGAGGATGGCAGCGGAGACTGTGACGATGAAGACGGGTGTCAAGGGTCTGGAACGGGGACGGTCAGGAGCTtcaGTGCCAACACATGGCCACAGCTGCTACGGAGCTTAACTCTAAATCCTCCAACCTGTGGAAGGCAAAGAAACAAAGTGTTCTCAAAcaatcctccctctgtccctcactgATACGATTTATAGTctccctgatacacacacacacacacacacacacacacacacacacacacacacacacacacacacaaacagagcctTGGGCAGGCCTGGGGAGGATTGCGAAGGGATTATTGAGAAGACAGAAAACCTGATGACTTTGATTTTCTCATTTGCTACCTAATCATCCAACTgactcctcctcacccctccaccctcctcacacctccaccctcctcacccctccacccTCCGCACACCTCCACCCACCTCTATTATACAGTGTGCTGGACTGTCCAGTCAACTATTATAGAGGTGTGGAGATATTTGATTTGTGGCACAGGAGAGAATGTGTTGTTATGGGGTGGAGGTCAGGACTCTtcctcttttcatctctctctctctctctctctctctctctctctctctctctctctctctctctctctctct

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU824831 lncRNA upstream 29626 57901514 ~ 57902669 (+) True G726063
TU824741 lncRNA upstream 37938 57893810 ~ 57894357 (+) True G725988
TU824738 lncRNA upstream 54543 57876825 ~ 57877752 (+) True G725985
TU824815 lncRNA upstream 56019 57874589 ~ 57876276 (+) True G726053
TU824813 lncRNA upstream 64888 57866178 ~ 57867407 (+) True G726051
TU824957 lncRNA downstream 8139 58098030 ~ 58098854 (+) False G726183
TU824959 lncRNA downstream 8139 58098030 ~ 58098854 (+) False G726183
TU824960 lncRNA downstream 8139 58098030 ~ 58098854 (+) False G726183
TU824963 lncRNA downstream 8139 58098030 ~ 58098854 (+) True G726183
TU824966 lncRNA downstream 10950 58100841 ~ 58101688 (+) True G726186
trnag-ucc-2 mRNA upstream 3849 57928375 ~ 57928446 (+) True trnag-ucc-2
trnam-cau mRNA upstream 4410 57927813 ~ 57927885 (+) True trnam-cau
trnai-aau mRNA upstream 9672 57922550 ~ 57922623 (+) True trnai-aau
trnap-agg-8 mRNA upstream 16224 57916000 ~ 57916071 (+) True trnap-agg-8
XM_036985787.1 mRNA upstream 77878 57850799 ~ 57854417 (+) False LOC118965533
XM_021613129.2 mRNA downstream 75756 58165647 ~ 58268383 (+) False LOC110530232
XM_036985802.1 mRNA downstream 115701 58205592 ~ 58268383 (+) False LOC110530232
XM_036985803.1 mRNA downstream 245303 58335194 ~ 58649978 (+) False LOC110530233
XM_036985804.1 mRNA downstream 245304 58335195 ~ 58649978 (+) True LOC110530233
LOC118965657 mRNA downstream 582676 58672567 ~ 58672675 (+) True LOC118965657
TU824799 other upstream 78663 57853012 ~ 57853632 (+) True LOC118965533
TU824655 other upstream 376813 57554723 ~ 57555482 (+) True G725907
TU824624 other upstream 416901 57513606 ~ 57515394 (+) False G725878
TU824625 other upstream 416901 57513606 ~ 57515394 (+) True G725878
TU824563 other upstream 454566 57468872 ~ 57477729 (+) True LOC110530213
TU826058 other downstream 267148 58357039 ~ 58358135 (+) False G727161
TU826259 other downstream 556968 58646859 ~ 58674005 (+) True G727348
TU827009 other downstream 891040 58980931 ~ 58981271 (+) True G728057
TU827614 other downstream 1670584 59760475 ~ 59766358 (+) True LOC110530248
TU829329 other downstream 2950677 61040568 ~ 61042129 (+) True G730206

Expression Profile