RNA id: XM_036985824.1


Basic Information

Item Value
RNA id XM_036985824.1
length 3421
RNA type mRNA
GC content 0.43
exon number 5
gene id LOC110530248
representative False

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 59748668 ~ 59768093 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

AGGTTTCCGGAACAGGAGACTCCGCTGGCATGACAGTGGTGCAGTTACCTGTTGAGCAGACAGTTCAGGTCCAGGCTGTCATCCAGGCTCCTCAGGCCTCTGTCATCCAGTCACCACAGATGCAGACTGTACAGAAAAATCCTCAATGAACTATCAACGGATTCCTCCTCAATTCCAAGAATTGAGGAGGAGAACCCTGAAGATGAGGTTCCACCCTCCAGTGTCTCTTCAGTTCAAGTTCCAACTTCAATCTATCAGACCAGCTGTGGCCAATACATTGCCATCACCCAGGGGGGAGCCATCCAGATAGCCAGCCCAGGCAGTGAGGGCCTCCAGGGTGTACAGTCGCTGGCCATGTCCAACTCTGGTACCCAGATCCTGCAGTACGCAGCCCAGGCAGGGGACTCTGGACAGCAGTTATTCTCTGTGCAAGGTGGCCAGATGGTGATACAAGCTGCCACTGGAGATATGCCAGCGTACCAGCTGCGTTCGCCCACTTCGGGCCTACCCCAGGGCCTGGTGATGGCTGCGTCCCCAGGCTCCCTGTCCATGCACAGCCCCCCGGTGCACACTGAGGAGGTCACACGCAAGAGGGAGGTCCGCCTCATGAAGAACAGGGAGGCTGCACGGGAGTGCCGGAGGAAAAAGAAAGAGTATGTCCGGTGTTTGGAGAACCGTGTGGGCGTGCTGGAAAACCAAAACAAGACCCTCATCGAGGAACTCCGAGCATTAAAGGACATTTACTGCCACAAGAACGAGTAGCTCAGTAGCTGTACTCAGCCTTGTGCCAGGAGAGAGATATCCTACTAAAATGGCTCATATAGTTCCGTTTACAGACTGACTGATCTAAAAGAATGGAACAAAAACTACTTTCACTGTCTACTCCGCTTTTTCAGGCCCAGTCACTTTGATACTGCATCAGAGGTTGTCAGGCGGCCATAGGCTTGTGCTCTCCGGGCACAAGTCAAGTCTTGCTCTGGCCCAAGGCCCCTGTCTGTCCTCACTCATGCGCTTGCAAGTGAATACACAAGTGTCGCCCAGCCGCGTTTTGCTTTTGCTATTTTCAGTGAGGCAACCAATGAGAAGCCAGCCTGCAGAGGAAAAAGGAAGTACATGTGCTTCCTGAAGGCACAACGCTCACCACCACTGACTCACCACAGTGGAGAAGCAAAAGCTAAAGACCTGCGTTAGAGCCTCATTATCAGCCAGCAAGTTTGTGCAAGCAGACTCACCAGCAAGCCAACCTACCTTAGCCTAAGTGCCAGTCTGTTTATgctatcatgccaactccttgttACTTATTgtcatgtttggcttgacaatgaaaCCAATCAAGTTGGCAAGAGCACCaatagatctaggaccaggctaaaCCTACCCATCTTTACTTTTCATTGCTAGCTAGAGTTGTTCTTATATTACTATATTTCTATTCTCATCTTGGCTGTTGTCAACATTCCTTTGTGAAATGAGATTAACCTCTTCTTTCAGGACGAAGTGTGACGAGTAAATACACTTTCTACATCATTGGAAGTTTTGGAATGCTGTATTTGGCCATTTGAGTCCATTCAAAAATGTTTATgacttaaaggtccaatgcaaccGTTTTTATCTCCATAGCAACTAATTCCTGGGCTACAataaagtaccttactgtgattgttttcaattaaagtggtcaaaaataaaccaacatttgcttcttagcaaagagctatttctcaagcaagaatttagcttgggctgtctgggagtggtctgagctgttattggcagagaggtttggaagaGAGGTTTCTTACAGGTccattaactaatttaccaccagGAAGACCAAAACACCATCCCacaaaaacaggctgaaatttcagatggttttttcaaacagctcttccactaaaagggcattattgtCATTTAGAAAATGACAATTTCACagcattattccaacctcatagttttGAAATTATTTAAAAACATAGGCAAATCTCGTTTTTGACCGCACTGGGCCTTTTAATGTGTTACTTGAATTAATGTGTAAGACCCAGTGTCAAGGATGtatctaacatgctgaccaaaccgcGCTTGTgcggtcaaaaagcattaaacattttatggcaatttagctagctaactttctGTTGCTAGCttatttgtcctgggatataaacattgggttgatattttacctgaaatgctgAATGTCCTCTTTACCTGAAAGGTCCTCTACCAAATTtgtttctcctcatctctcctccttccttcaggcttctttttttcttcttgaGACTTCATATGGAGGTTGGAAACCAACATTACACCATTACTACAACCGaccggagtgtggacctcagttcatctttcaatcacccgcataggtatatgctcctaaaatcCAATGAGGAGAtttgagaggcaggacttgcagtgcaGCGCGTtgagcatcacaaatagaaccacgTTCTATTTTAGCGCCCGGCTACGCAGTTGCTCGTTAACGCGCGCAAAGATTGAATGCCTTTTATGCCTTTTACTTGATGTGCTCTTTTCAAATGGCACagttcaattaaaaaaataaacatgacaTGCCCCTCAGAGGAATTTAAAttaaataattatatatttatagCCATCTGAGGAATCTTATCTCACCAAGACCATGTTGAAATGACTACTGCTATGCTACTCTTTCAAAACGGCTACATTTTCCGTTTACTGAATGGTTCACCAATCGTTCTCCACTTTGTCTGTCTTGGAACATTACTGTGCTGTGCCAGTATACTGTACAcatgtaaacaaaaaaaaaaaaaaaaaataataaatacaaccaCGGAAAGTACTGATGAACTAATGCTTGGGTATTTTGACtgtctttgtaaaaaaaaaaaatgtatgtgaattACTTTCTAATAACAGgttggatgtgtcccaaatggccccttattccctttatagagcaCTATgagttatgggccctggtcaaaagtagtgcactaaataaggaatagtgtgccatttgggacatgcaTAGAGTTCATGACTGCTCTGTTTAAAGGATATTGCTAATGAATGTCCATGAGAGTACAGACTTGACTGATGAAGCCGCTTCATTTTCTTTTCTCACACCAGTTCTGCTTGCGTGATTTTGCACCCTCCCGCTTGCTTTGAATTTTGTGGTAACCTTTCTTTCCGTTTACATGTATATGTCCTTTGTATGTTGTCATGCCAGTGGTTATACATTTCAGGTGAGGTGTCGAATCAGATGAAAAAGAAAATTGATCTCAGTAAATGTTGTTGGATAGATTTGAAGAGCATGTCAAACAGTTTAGCTCTTAACCAGTTGTACAGCGCGCATTGATCCCTGCTATGTTtgtaaattgttttaaaaaacaactatttctaATAAAATTTCCAAAAGTTC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU827586 lncRNA upstream 17783 59689483 ~ 59734536 (+) True G728583
TU827591 lncRNA upstream 17986 59682037 ~ 59734333 (+) True G728584
TU827579 lncRNA upstream 31769 59676936 ~ 59720550 (+) False G728580
TU827578 lncRNA upstream 38547 59682399 ~ 59713772 (+) True G728580
TU827584 lncRNA upstream 43851 59700137 ~ 59708468 (+) True G728582
TU827619 lncRNA downstream 2352 59770445 ~ 59770650 (+) True G728609
TU827639 lncRNA downstream 49170 59817263 ~ 59819000 (+) True G728628
TU827649 lncRNA downstream 66798 59834891 ~ 59837406 (+) True G728638
TU827653 lncRNA downstream 75793 59843886 ~ 59844122 (+) True G728642
TU827654 lncRNA downstream 76692 59844785 ~ 59844994 (+) True G728643
XM_021613133.2 mRNA upstream 540502 59188067 ~ 59211817 (+) True LOC110530237
XM_036985805.1 mRNA upstream 667465 59057416 ~ 59084854 (+) False LOC110530235
XM_036985807.1 mRNA upstream 667465 59057416 ~ 59084854 (+) True LOC110530235
LOC118965657 mRNA upstream 1079644 58672567 ~ 58672675 (+) True LOC118965657
XM_036985804.1 mRNA upstream 1102341 58335195 ~ 58649978 (+) True LOC110530233
XM_021613157.2 mRNA downstream 7637 59775730 ~ 59825064 (+) False LOC110530249
XM_021613153.2 mRNA downstream 7705 59775798 ~ 59825064 (+) False LOC110530249
XM_021613154.2 mRNA downstream 7706 59775799 ~ 59825064 (+) False LOC110530249
XM_021613155.2 mRNA downstream 7706 59775799 ~ 59825064 (+) False LOC110530249
XM_021613156.2 mRNA downstream 7707 59775800 ~ 59825064 (+) False LOC110530249
TU827009 other upstream 771048 58980931 ~ 58981271 (+) True G728057
TU826259 other upstream 1078314 58646859 ~ 58674005 (+) True G727348
TU826058 other upstream 1394184 58357039 ~ 58358135 (+) False G727161
TU824799 other upstream 1898687 57853012 ~ 57853632 (+) True LOC118965533
TU824655 other upstream 2196837 57554723 ~ 57555482 (+) True G725907
TU829329 other downstream 1272475 61040568 ~ 61042129 (+) True G730206
TU829420 other downstream 1390717 61158810 ~ 61159193 (+) True G730267
TU829538 other downstream 1601934 61370027 ~ 61810354 (+) False G730377
TU829598 other downstream 1661770 61429863 ~ 61468746 (+) False G730425
TU829628 other downstream 1699260 61467353 ~ 61468047 (+) True G730447

Expression Profile