RNA id: XM_021613157.2


Basic Information

Item Value
RNA id XM_021613157.2
length 2529
RNA type mRNA
GC content 0.42
exon number 12
gene id LOC110530249
representative False

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 59775730 ~ 59825064 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ATCGGACAGATTCAGAGTTGAACATGGAGTACAACCCCTCTGACCATCCTCGGGCCAGCACTATATTCCTCAGTAAATCTCAGCCGGATGTGGAGTTGCCTAGCAAGAATGTGCGTGAAAAAAGAAAGAGCCTCTTCATCAATCATTTAACACACATTGACGAGTCAAAGCATGGATCAAGGAGACGAAAACACAGCTCCTGTTCCACCATCTTCCTAGATGACAACACTGTCAGTCAGCCCAACCTTAAATTCACCATCAAATGTGTATCCCTTGCAATATATTACCATATAAAGAACAGGGACACAGATGGAGGAATGCAGCAAGACATTTTTGACGAGAAGCTTCACCCTCTCTCGAAATCAGAAGTGCCGTCTGACTATGACAAACACAACCCAGAGCAGAAGCAGATCTACCGCTTCGTCCGGACGCTGTTCAGCGCTGCTCAGCTCACTGCAGAATGTGCCATTGTTACACTGGTATACGTTGAGAGGCTGCTGACATATGCAGACATAGACATTGGCCCAGGGAACTGGAAGCGTATGTTGCTGGGAGCCATCCTGCTGGCATCTAAAGTCTGGGACGATCAGGCTGTGTGGAACGTAGACTACTGCCAGATCCTCAAAGACATCACCGTGGAGGACATGAACGAGCTGGAGCGTCAGTTTCTGGAGCTTCTTCAGTTCAACATCAACGTTCCGTCTAGTGTTTATGCCAAGTACTACTTTGACCTGCGCTCACTGTCAGAGACCAACAACCTGAGCTTCCCTTTGGAGCCCCTGAGCCAGGACAAAGCCCAGCGACTAGAGGCCATCTCGAGGTTGTGTGACGACAAGTACAAGGATGCCAGGAGAGCTGGCAAGAAGCGCTCTGCGAGCGTGGACAACCTGGTCGGAGTGCGATGGGTCCCTGCCATCCTCTCCTAACAACCAGGAACATAGACCAGACCTGAGACTGGGCCTCAGGCCAGCATGGTGTGGCTTTTACCTAGCAAAATTCTAGTAACTTTCCGAAAAATCCCAGATTTTCTAGAAATCCTGCTTGGAAGATTCCCGGAATCAGCAGGAAATCTAGAATCCTCCGAtctggatttctggaaaacctgagaatttggggaaagttatcGGAATTCTGCTCCCCTAACTTCACAGATAGATAGATGCCTTTGCAGTGCCGCTGCTCCTGTAACACAGAAGGAAGAACTCTCTACAGGACTGGTACTTCACTAACTGTTAAGAAAAAGAAAGCTTCTTTGTGATATAACATAAAGATTTgactgtttggagagctcatgACATCATAGCTCCCGCTATGACAGAAGTAGCCAGATGATCACCGCGGCAACATGAGCTTTATGCATTGAAGCAGAAAACCAAGATAGAAGTGGTCAGAAAACAAAATGTCAATGTCATTTGACCTCTTACCCTGGATCATGCCAAACGAAAAGGGACTGAAACGAGGAGGGACGACCTGaaattgtccaataagaaacgtgTGTTTTCGTTGCCGTTGCAAAACGCTTTGCTACAGTGTCCACTGATGAATACGACCATGGGTCTGGACTATCCAACCTGGCATGACAGGACAGATGGTTGCCTTTAAAGACGGTTCTGTGGCTTTTGGTGAACAGgttgttatttattttgtattcatAGTTGTTACTACTAAGTGCTACAGCCAACCAAACCCAGGTACAATATTTGATCAGATAAAATAGCCTTCTAGCTGTGCAGGCGTTTCTACTTGATCTACATACACATTCCAGAATCATATAGTTCTTAATGAACATAATTATTTTGTTAATGTTCAAATAAGTTGGCCATAATTAATACCTTTCCACTAGTGTACAGTTACTGTGCCTCCCAATACCTAGAATGTTGTATTCAAATCTGCAGCTAAAATCCTAATTGAAAGCTTTTGGAGATATGTGAGTGATTTTTAGCTACTGTGAATGTGTCATCCACAGGATTCAAAGTAGGTTATGTTGACAAGAAAGCAACCAATGAAAGGATAGTCATGGGTTGTCATACTTGATACACTGTAGAGCGTGACTTGTGTTTTCTGTCTCAGAACTCTGGATGTTTTAAgctacaatgttttttttaagaACAAAAACCTGAACCCTGAGCCAACTTATATATAACATGGCTCCTTCAAACTTTATACAGATTGATTTTGTCTTTTAAGCAATTATTTTTTATTCAAATATTATTGTTAAATTCATGATGATCaacttgtttttgtgtgttttatcATTTGTCAAGAAGACCCCTGACAACTGAAGCACTAGAATTTAATTATTTTGCTAATCAACTTTCTACAGTGTTTAAACAAGTATTAAAGTGATGATGAGATCATTAACTTAATtgttaaatatttatattgaGGTGTTGATCCATGTTTATACTAAAAGAAAATTCCCTTGTTTtcttattttgtgttttttttgtacaGTTAAACAGGCTACAAATAAATCTCAGAGGATAACACATTAGTGTTTAAAAACACATTAGTGTTTAAAAACACTTA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU827619 lncRNA upstream 5080 59770445 ~ 59770650 (+) True G728609
TU827586 lncRNA upstream 41194 59689483 ~ 59734536 (+) True G728583
TU827591 lncRNA upstream 41397 59682037 ~ 59734333 (+) True G728584
TU827579 lncRNA upstream 55180 59676936 ~ 59720550 (+) False G728580
TU827578 lncRNA upstream 61958 59682399 ~ 59713772 (+) True G728580
TU827649 lncRNA downstream 9827 59834891 ~ 59837406 (+) True G728638
TU827653 lncRNA downstream 18822 59843886 ~ 59844122 (+) True G728642
TU827654 lncRNA downstream 19721 59844785 ~ 59844994 (+) True G728643
TU827658 lncRNA downstream 26046 59851110 ~ 59851391 (+) True G728647
TU827659 lncRNA downstream 29139 59854203 ~ 59854520 (+) True G728648
XM_021613151.2 mRNA upstream 7637 59748668 ~ 59768093 (+) False LOC110530248
XM_021613150.2 mRNA upstream 7637 59748669 ~ 59768093 (+) False LOC110530248
XM_036985824.1 mRNA upstream 7637 59752319 ~ 59768093 (+) False LOC110530248
XM_021613152.2 mRNA upstream 7637 59760445 ~ 59768093 (+) False LOC110530248
XM_021613133.2 mRNA upstream 563913 59188067 ~ 59211817 (+) True LOC110530237
XM_021613160.2 mRNA downstream 233 59825297 ~ 59828412 (+) True LOC110530251
XM_021613163.2 mRNA downstream 247069 60072133 ~ 60077499 (+) False LOC110530253
XM_036985834.1 mRNA downstream 247107 60072171 ~ 60077499 (+) True LOC110530253
XM_021613165.2 mRNA downstream 331278 60156342 ~ 60168569 (+) False LOC110530254
XM_021613164.2 mRNA downstream 331279 60156343 ~ 60168950 (+) True LOC110530254
TU827614 other upstream 9372 59760475 ~ 59766358 (+) True LOC110530248
TU827009 other upstream 794459 58980931 ~ 58981271 (+) True G728057
TU826259 other upstream 1101725 58646859 ~ 58674005 (+) True G727348
TU826058 other upstream 1417595 58357039 ~ 58358135 (+) False G727161
TU824799 other upstream 1922098 57853012 ~ 57853632 (+) True LOC118965533
TU829329 other downstream 1215504 61040568 ~ 61042129 (+) True G730206
TU829420 other downstream 1333746 61158810 ~ 61159193 (+) True G730267
TU829538 other downstream 1544963 61370027 ~ 61810354 (+) False G730377
TU829598 other downstream 1604799 61429863 ~ 61468746 (+) False G730425
TU829628 other downstream 1642289 61467353 ~ 61468047 (+) True G730447

Expression Profile