RNA id: XM_021613207.2


Basic Information

Item Value
RNA id XM_021613207.2
length 2064
RNA type mRNA
GC content 0.46
exon number 13
gene id LOC110530278
representative False

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 61245242 ~ 61296169 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GAGCCACGACACAGAAACACGAATGTACATCCAGGGAGAGGGAGTATGATCCTCGGCCACACGGTCCAATGGGAATTGTACTGATCTGGTCCTTAGTTATGATTCTAACAAGGTGGATTTCCCACAAGAGACGAGGGGCGATCTCTTATGACAGTGAGAATCAAACAGCTCTCTACATTCGGATGCTCGATGTGAGAGTCAGAAGCCAAGTGGGGTTTGAACCGGAACCAAGAGGGTCCCATCCTTACTTGTGTGTCGATTTCCGAACTTTGCACTCCCGACCCCAGTCTGCGGGGCCTGTGTCTGCCAGGAATGTCCGCAGGCTGCTGAGCTTTCAGAGGTACCTCCACTCGTCACGGTTCATCCGCGGCATCCCAGCCTCCAACCCACTAGGCTACATCCTTGATGATGACTACACAGGTCAAGCCAAGTTAATGCTGGAGAAGGTTGGAAACTGGAACTTTGACATGTTCTTTTTTGATAGACTTACAAACGGGAACAGCCTCGTCAACCTGACCTTTCACTTATTCAACAGTTATGGGTTAATTGAGCTCTTTCAGTTGGACATGGTTAAACTTAGAAGATTTTTAGtcaTGATTCAAGAGGACTACCGCAGCCTGAACCCCTACCACAATGCAGTCCACGCTGCGGACGTGACTCAGGCCATGTATTGTTACCTGCAGGAGCCCAAGCTTGCTGAGACGATGACTTCCTGTGATCTCCTGCTGGGTCTGCTGGCTGCTGCCACCCATGATCTGGACCATCCAGGTGTCAACCAGCCTTTCCTCATAAAAACAAACCATTATCTAGCTGCACTGTACAAGAATAGCTCAGTTTTGGAGAATCACCACTGGAAGTCTGCTGTGGGCCTGCTCCGAGAGTCAGCACTCTTGtcccaccttcccactgaagacagATTGAACATGGAGGAGCGGCTTGGATCCCTGATTCTGGCCACGGACATCAGCAGGCAAAATAACTATTTGTCAGAGTTCAGGACACACTTGGACAAGAGAGACCTCTGCCTCACTAACGGAAGACATCGGCACTTTATCCTTCAGATAGCTCTGAAGTGTGCGGACATCTGCAACCCCTGCCGACCGTGGAAACTCAGCAAACTGTGGAGCGAGAAAGTGACAGAGGAGTTCTTTCATCAAGGTGACATTGAGAGGAAACATCATCTTGAAGTAACCCCACTCTGTGACAGGCAATCCAACTCAGTTGCCAATATACAGATTGGCTTTATGACGTACGTGGTGGAGCCTCTGTTTGTGGAATGGTCACGCTTCTCTGACACACGGCTGTCCCAGACCATGATGGGCCACCTGAGCCTGAACAAGCAAGGCTGGAAGGAGGGTAGAGACAAGCAGGAGGCTAACACTAGTAGGGCCTCAGAGGAACAGAGGACTTCTGATGCCAAGGACTCAAACTCCAAAGAATTACCTCAGGGAAGTAAACGGTCATGACTCGCCAAGAGAGTGAAGTGTCAGGAAGCGAAGAGAATCTCCTCACCGGACAAAAACTACATTACCCATCACTCCCTGCACCACAGCACCTCAGCCACATGCTCCCCATCTAGGTTAACCACTGTTTTTGTTTTTCACATAATTTAACTTAATTTATTGCATTTGGACCCTTTACTTTAACAACATAGAGCAATACATAGATACCTCATGTTGCTTCTGCTGTATTTTTTTCCCATTTctttttttcatattttatttatttttaccgtAGTTCTGCTCTGACATCCCTAATTTGACATGCCACTCTTTAAATAGAGACCTGAAgggaattatttaaaaaatacccTTCTGATTATAGTGCCATCTGCAAACAATTTGTTTTAATGTTTTTAAAGTGAGGAAACCTTGTATTCAGAGAGAGGTTCATGTTGAGTGATTGAGACAAGCTTCTGTGGGTTTCTCTATTTCAGACTTAGTAATACTTCCTCGTACAATAAATAATGTGAAGAGCCCACTTCATTGCTGCCTCTTTACAAGCATCTACTTTGTGTTGTATTTTACAAATTAAACATtggttctgtaaaaaaaaaaaaaaaaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU829492 lncRNA upstream 4997 61253206 ~ 61262867 (+) True G730334
TU829433 lncRNA upstream 94163 61173388 ~ 61173701 (+) True G730279
TU829432 lncRNA upstream 95024 61172618 ~ 61172840 (+) True G730278
TU829403 lncRNA upstream 106984 61159393 ~ 61160880 (+) True G730264
TU829401 lncRNA upstream 126402 61140563 ~ 61141462 (+) True G730262
TU829514 lncRNA downstream 18169 61314338 ~ 61314555 (+) True G730355
TU829519 lncRNA downstream 26678 61322847 ~ 61323094 (+) True G730360
TU829512 lncRNA downstream 47236 61343405 ~ 61348640 (+) True LOC118965539
TU829570 lncRNA downstream 292198 61588367 ~ 61593191 (+) False G730401
TU829571 lncRNA downstream 292198 61588367 ~ 61589260 (+) True G730401
XM_021613200.2 mRNA upstream 46213 61220291 ~ 61221651 (+) True LOC110530277
XM_036985905.1 mRNA upstream 82897 61161483 ~ 61184967 (+) False LOC110530951
XM_036985903.1 mRNA upstream 82897 61161495 ~ 61184967 (+) False LOC110530951
XM_036985904.1 mRNA upstream 82897 61161594 ~ 61184967 (+) True LOC110530951
XM_021613194.2 mRNA upstream 114931 61145742 ~ 61152933 (+) True LOC110530272
XM_036985915.1 mRNA downstream 1519 61297688 ~ 61305678 (+) False LOC110530279
XM_036985913.1 mRNA downstream 1641 61297810 ~ 61305678 (+) False LOC110530279
XM_036985914.1 mRNA downstream 1796 61297965 ~ 61305678 (+) True LOC110530279
XM_021613210.2 mRNA downstream 30979 61327148 ~ 61339612 (+) True LOC110530280
XR_005052928.1 mRNA downstream 47627 61343796 ~ 61344885 (+) False LOC118965539
TU829420 other upstream 108671 61158810 ~ 61159193 (+) True G730267
TU829329 other upstream 225735 61040568 ~ 61042129 (+) True G730206
TU827614 other upstream 1501506 59760475 ~ 59766358 (+) True LOC110530248
TU827009 other upstream 2286593 58980931 ~ 58981271 (+) True G728057
TU826259 other upstream 2593859 58646859 ~ 58674005 (+) True G727348
TU829538 other downstream 73858 61370027 ~ 61810354 (+) False G730377
TU829598 other downstream 133694 61429863 ~ 61468746 (+) False G730425
TU829628 other downstream 171184 61467353 ~ 61468047 (+) True G730447
TU829596 other downstream 172025 61468194 ~ 61468746 (+) True G730425
TU829663 other downstream 191407 61487576 ~ 61488104 (+) True G730468

Expression Profile