RNA id: XM_036985915.1


Basic Information

Item Value
RNA id XM_036985915.1
length 3470
RNA type mRNA
GC content 0.42
exon number 7
gene id LOC110530279
representative False

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 61297688 ~ 61305678 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TAAGAACAATGCAGTTGAATGGCTTGTGAAGTGGGCATGTCGCCCCCAACGTCCAATCGGAGACGTTTATATTGCAGAGTGGCCGCTTGGAACAATCCTGTCCAGTTTGTCGAGGCATCATGAGTAGGGAGCCAGACGCTTTGGCTGTGGTGAACCAGTTGAGGGATCTTGCTGCAGATCCTATGAACAGAAGAGCTATTGTTCAAGACCAAGGTTGCTTACCGGGACTCATCCTTTTTCTGGACCATCCCAATCCCCAGGTTGTCTACTCAGCACTCCTGGCTGTTCGCTACCTCGCAGAATGTCATCAAAACAGGGAGAAAATGAAGGGAGAGCTGGGGATGATGTTAAGTCTTCAGAATGTCATGCAAAAgaCAACCACCCCACGAGAGACTAAGATGCTGGCCTCAGAAATCTATGAACTCCTTCAGGCTTCTAACGGTGAGGATACAGACAAGCCTGAGGAGGGGCCCTCTTGCAGACGCAAGGACCAGTTCTTCCTGGGATCCACCAACAAGCGGGCCAAAACAGTGGTCCTCCACATACATGGCTTGGATGACTCTAGCCGGAGGAGCCTTTGTGAAGAGTCCTTGTTGAAGATCCGAGGCGTCATCAGCTTTACATTCCAGATGGGCATTAAGCGGTGCATCGTCAGAATCCGCTCAGACCTGAAGGCAGAGGCTCTCGGTTCTGCCATCGCCTCAACTGAAGTAATGAAAGCTCAACAGGTGGtcaggggagaggatggagaagagGTAATCATCCCATTCCCAGAGGATGGTTCGGTAGCAGTGGAGCAGAATGTGGCTCTTCCAGACTACCTTCCAGAGGAGGAGAGCCCATCCCATGAGCCAGACAAGGCTGTGACCTGCGTGGGCACAGGGCAGGATGGAGCAAGCTGGCTAGGCACTGCAGCTAACTTCCTGTCCCGCTCGTTCTACTGGTGACACTCCCAGACCACCCACACTTCttcagatactacagatacagaaTCAGGCTCCCAGCTGCCAAAGAGCTGAACTGCCAAAGGCAATGTGTAACAACAAACTATTCCAATGCGTGTACAGTACACACATGCACCCACAATCTCACACCCACCTTGCACCATACAGAATCACCAAGCCATTAAGGGAGAGGACTGGCTTCTGGAATGTATTCTTATTTCTTATCTTTAGGGTTCTGATTGAGAGCTAGACTATTCTTTCTGCACATGTAAATGTTTTGAAAACCAAATTGTCTTGTTGTGAGGAGCATTATTGTGGCAGCATTACGACTTGATCCATCAGAAAGGGTCCAAACTTTACCACACAATTAATTTCCTGTAGTTAGAGCACTTTTTTTAAGGATCTGAAAGCGTGTTTGCATTAAGGGTCTTTTTCTCCCTACCTTTTTATCTGACTTTTTAGACCAAGAACTGACCCATCCTCCCCTTTTTTAGCAACGGGTGTTCCAGAATATGCAGTAATCAACGTGTGTTCAGTTATCGTGCCTTTCGTTTCATTCTGTTTACATGCAGACCCTTGTGACTGACTGTCAGCTTTAGTTCTGAAATGTATTCTGCCTGTAAGGCTTCCTCCTTTGATATATTCCAAAGGTTACTGATGTAGACACTGGATAAACTCCAATCTAGGTACTCTTCAATTCCAATGCCTACTGAATTCATTAATGGAATCTGTCGTGAGTTATGAGACATGTTTACAGGACTGGGTGGCTGGTTGAGACCGTTTTCTCTCCAGAAACAGCATGGAGATTTTACAGTCTGACCACTGTGGTATTCTCTAACAACGTGGTGTCATGCATTATTAACTTGTTTTATGTTAAGTATTACTCATTCGACGGGCAAAATTAGAATATCTTTCCTAAGGAAGAGCATTGTTCCTCTTTTAGGGACAGCCTCTGCCATTTCCCCAATGTCTTGCATGATTTAACACCGTTAAAAATAATACAAGGCTAAAcgtaatctctcgtggacagactacATAAACATAAATGGTTAAGCAGCTGACCAAATTACATGAGATTTAAGTTCTGGTTTAACCAAGATTAGGCTAAGCCTAACATGAATCATCTCTGAATATATGTTGATGGAAACAAACATTGTTCGCTTTCATTGGAGATGGATTGGCCAGCAGTGTCCTTAACCTGTCGTTAAAGGGAGCTCAAGTGGATGCTGCCATAGTTTAGGGTTATCTGTAAGTATAGAATTCTGAATATTTTGGTTCAGTCTATGTAGTGGATCAATTGCCCAGCCTCTGAAATAGCTATGCTATCAGTGCATGTTAGTGTATGAATGGGAAATGTTTATTATTATGAGCTTATTACTGTTCAAAGTAAATCTCAGCATAAGAAGTATTCCGTTTGGACCACCTATTTTACAGGTAACAACCTCTCAGTGGGAGAACTTTCAAAAGAAGTTACCTTTTGAAAGTGTTTCTTGAAAGTCAATATCTGTCTGTGgagggaggggaaaaaaatcctTGTATAGAATTGTCAAGCAATGTCCTGTTGTCCACTCAAGTATTTGTGTTGTTTCATCCTGTAAAGACTCCCATCTCGTACAATCTCACCTGACTAGATTGTGTTCATCATGCCAGGGCAGCATGCATCTTATTTGCGAATACTCTATAGTTCACACTCATCAATACTGTGCATTGGTTGCCAATGAAGTCATTCACAAAgaaatatgtaaatatatttgtCTTGTCATTGACATGCTTTTTGTTCAGAAACCATTATTAGGTAAACTATCATGATTTAAGTCAGCCTTTTGTTTGTCAGCTTTATTTGACTCAGGTGACATTTCTATCACATAATCCATGTATTTTAAATTAACCCCCAAAAATGAAATATTTCCTTTCCCTCCTGACTATTAATGGGTAATTCCACtacttttcaacctcattttcattatctccagcacagtAGCAGTGTCTACCGGCAATAAAATACCCTCCCTCTGGCTAGAAACTCATTGCAGATTTTGAAAATcacttaaaataaataaaacctttTTATCCTGCACTGTGATGTCACAAAGAAGCATTTTATAGGACCttatctttttaaccacagataATAGAAACACTGTTTTCAGAcatgtagacactggtttggtgctgggGATAAtgaatgaggttgaaaagtgaaTTGCTCTTTTAACATTACAACCTATTTATGTTGGAGTTGTTTCTTTCCACCAATACAGAATGAACACCTATCGCACAGGAATGTTATGTAGAGTATGTATGTGCATCACAGGTATGTTTGCTGCCTGTCAGTTTGTCTGTAGGGTTGTGGGCCATTGTGTTTTTGATGTGAGTTATGATTCCTAAGAGTTACATCAAATAATATTAAAAAAACAATATTATATGAAATATGTAATTGTTCATTTTATTGACACTGATGGTATAGGGCACTGCCTCAAATGGAGGACATGACCGTTTATTCAACAAAATAAACGATGAAAGATG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU829502 lncRNA upstream 19099 61278339 ~ 61278589 (+) True G730343
TU829492 lncRNA upstream 34821 61253206 ~ 61262867 (+) True G730334
TU829433 lncRNA upstream 123987 61173388 ~ 61173701 (+) True G730279
TU829432 lncRNA upstream 124848 61172618 ~ 61172840 (+) True G730278
TU829403 lncRNA upstream 136808 61159393 ~ 61160880 (+) True G730264
TU829514 lncRNA downstream 8660 61314338 ~ 61314555 (+) True G730355
TU829519 lncRNA downstream 17169 61322847 ~ 61323094 (+) True G730360
TU829512 lncRNA downstream 37727 61343405 ~ 61348640 (+) True LOC118965539
TU829570 lncRNA downstream 282689 61588367 ~ 61593191 (+) False G730401
TU829571 lncRNA downstream 282689 61588367 ~ 61589260 (+) True G730401
XM_021613201.2 mRNA upstream 1519 61245242 ~ 61296169 (+) False LOC110530278
XM_021613202.2 mRNA upstream 1519 61245242 ~ 61296169 (+) False LOC110530278
XM_021613203.2 mRNA upstream 1519 61245242 ~ 61296169 (+) False LOC110530278
XM_021613204.2 mRNA upstream 1519 61245242 ~ 61296169 (+) False LOC110530278
XM_036985909.1 mRNA upstream 1519 61245242 ~ 61296169 (+) False LOC110530278
XM_021613210.2 mRNA downstream 21470 61327148 ~ 61339612 (+) True LOC110530280
XR_005052928.1 mRNA downstream 38118 61343796 ~ 61344885 (+) False LOC118965539
XM_036986879.1 mRNA downstream 64907 61370585 ~ 61375464 (+) True LOC110530952
XM_021613224.2 mRNA downstream 728937 62034615 ~ 62046177 (+) True LOC110530301
XM_021613231.2 mRNA downstream 982892 62288570 ~ 62299158 (+) False LOC110530305
TU829420 other upstream 138495 61158810 ~ 61159193 (+) True G730267
TU829329 other upstream 255559 61040568 ~ 61042129 (+) True G730206
TU827614 other upstream 1531330 59760475 ~ 59766358 (+) True LOC110530248
TU827009 other upstream 2316417 58980931 ~ 58981271 (+) True G728057
TU826259 other upstream 2623683 58646859 ~ 58674005 (+) True G727348
TU829538 other downstream 64349 61370027 ~ 61810354 (+) False G730377
TU829598 other downstream 124185 61429863 ~ 61468746 (+) False G730425
TU829628 other downstream 161675 61467353 ~ 61468047 (+) True G730447
TU829596 other downstream 162516 61468194 ~ 61468746 (+) True G730425
TU829663 other downstream 181898 61487576 ~ 61488104 (+) True G730468

Expression Profile