RNA id: XM_036985936.1


Basic Information

Item Value
RNA id XM_036985936.1
length 2726
RNA type mRNA
GC content 0.51
exon number 12
gene id LOC110530305
representative False

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 62288570 ~ 62299158 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GCTCTCCAGTGCACATTTCCTGTTGATTGGAATTTTATGGAATGTCAAAAGCGTAGCTTGTGATCATGCAAAGTATTTCAAATATTGGCTATCTGACACTTTGCTAGACGTTCGAATGTTGGCAAAAAGTTGTGGGACCAAAATTTGTTTTCTGTGCATGGATGGAAAGCCAATGCGCAGgttttcctgacatgaccctccagcatgacaataccaccacgcacagaacgagcagtatgactgcaagacaggaatgtcagtgttctgccatggccagcgaagagaccTTGAGGGCTAGGGCCAGCTGAAGAGACCTTGGATTGCTAGCTGAAGAGACCTTGGATTGCACCCTAGACCACCAGGGTACCAGCGCACGCCCAGACAACACCGGAATGGACATCACCGCACGCTGCACACTGGGTGATCCCAACAAGCTCCCAGAGGGTGTGCCCCAGCCGGCACGCATGCCCTATGTGTCCGACAAGCACCCTCGCCAGACATTAGAGGTCATCAATCTGCTACGCAAGCACAGAGAACTGTGTGATGTCGTGTTGGTGGTCGGCGCCAAAAAGATCTATGCCCACAGAGTGATCCTTTCGGCCTGCAGCCCTTACTTCAGGGCCATGTTCACAGGCGAGCTGGCCGAGAGCCGTCAGACAGAGGTTGTGATCCGGGACATTGATGAGCGGGCCATGGAGCTGCTCATTGACTTTGCCTACACTTCGCAGGTTACCGTTGAGGAAGGCAATGTGCAGACATTGCTGCCCGCCGCTTGTCTGTTACAGCTGGCCGAGATTCAGGAGGCTTGCTGCGAGTTCCTCAAGCGCCAGTTGGACCCCTCAAATTGCCTGGGTATCCGTGCCTTTGCTGACACCCACTCTTGCCGCGAGCTGCTGCGGATAGCTGACAAGTTTACACAGCACAACTTTCAAGAGGTGATGGAGAGTGAGGAGTTCATGCTGCTTCCAGCCAACCAGCTGATAGATATAATCTCCAGTGACGAACTGAATGTGCGAAGTGAGGAGCAGGTTTTCAACGCAGTCATGGCCTGGGTCAAGTACAGCATTCAGGAGCGCCGGCCACAGCTGCCGCAGGTCCTCCAGCATGTTCGTCTTCCTCTTCTGAGCCCAAAATTCCTGGTGGGAACGGTAGGATCAGACCCTCTCATCAAAAGTGATGAGGAGTGCAGAGACCTGGTTGATGAGGCAAAGAATTACCTGCTCTTGCCCCAAGAGCGCCCTCTAATGCAAGGGCCAAGAACACGCCCTCGGAAGCCCATCCGGTGTGGAGAAGTGCTGTTTGCAGTTGGCGGGTGGTGCAGTGGGGATGCCATCTCCAGTGTCGAACGATACGACCCACAGACCAACGAGTGGCGCATGGTGGCTTCCATGAGTAAGAGGCGCTGTGGAGTGGGTGTCAGCGTCCTTGACGATCTTCTCTATGCTGTTGGAGGCCATGACGGGTCCTCATATCTCAACAGTGTGGAGAGGTATGACCCCAAGACAAATCAATGGAGTAGTGATGTAGCTCCCACAAGCACATGCAGGACCAGTGTGGGTGTGGCTGTCCTGGGAGGGTATCTGTATGCAGTAGGGGGCCAAGATGGAGTATCCTGCCTCAACATTGTTGAAAGATACGACCCCAAGGAGAACAAATGGACGCGCGTGGCCTCGATGAGCACCAGGCGCCTGGGTGTAGCCGTGGCTGTACTGGGGGGCTTCCTCTATGCAGTGGGAGGTTCAGATGGCACGTCCCCTCTCAATACAGTAGAAAGGTACAACCCCCAGGAGAACCGCTGGCACACCGTCTCTCCCATGGGCACCAGGAGAAAACACCTGGGCTGTGCAGTGTACCAGGACATGATCTACTCCGTAGGAGGCCGGGACGACACCACCGAGCTGAGCAGTGCTGAGCGCTACAACCCCAGGACCAACCAGTGGTCAGCTGTTGTAGCCATGACTTCAAGACGTAGTGGGGTTGGACTAGCAGTGGTAAATGGCCAGTTAATGGCTGTGGGTGGCTTTGACGGGACAACGTATCTCAAAACAATAGAGGTCTATGATCCTGACGCTAACACATGGAGgCTCTATGGTGGAATGAACTATAGGCGACTTGGAGGAGGGGTTGGTGTTATCAAAATGACTCACTGTGAATCACACATATGGTAGCACCTCCAGGTCAAAGGCCTCACCGTCGCATGTGCCTCCGAAAGAAACATTGTTTATCATGCAAGGAACGAAGTCTATATTAACTGTAACACAGCCATGTTATTGGCAAGCCAAGGAAATGTCTTGTGACTATAAGCTTTACGGTTCCTGTGTCAAGTCTGGAAGGCTTATCTTGGAGCCTACGGTTCATCTCTCTTCTGTACTTCCTGTATTATGACTTGACTGGCCAAGAGGAACTAACTCTGAATAGATCAATCACATGAAGtattgtttgacatcatggggggAAAACCCTTAATTTCCTATTTTTTCGGTTACTGAAATGAATACTGCAGCCGCACTTTAAGATACAATTCAGATTTTTGCTGTGGTACCGGTTATATTATACCAACGTCTAGTTTCCTTTGAAATATTAAATGGGGCATGAAGAAGAATCTTCAGAGAACTGAAGGTGCAGGATGTGGTCTCACTGCTTCCCTTGATCCTCGTTGTGGAAAGTGGATGAACTTGTTAGGCAGTTGTTTAAAtctataaattaaattaaatgcaCTGTGATAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU830095 lncRNA upstream 169116 62117575 ~ 62119475 (+) True G730852
TU830049 lncRNA upstream 217702 62068134 ~ 62070889 (+) False G730813
TU830050 lncRNA upstream 217702 62068134 ~ 62070889 (+) True G730813
TU830060 lncRNA upstream 221022 62067204 ~ 62067569 (+) True G730821
TU830058 lncRNA upstream 222534 62065831 ~ 62066057 (+) True G730819
TU830243 lncRNA downstream 2674 62301832 ~ 62303132 (+) True G730987
TU831390 lncRNA downstream 62479 62361637 ~ 62361989 (+) True G731993
TU831392 lncRNA downstream 63941 62363099 ~ 62363301 (+) True G731995
TU831401 lncRNA downstream 71152 62370310 ~ 62370540 (+) True G732004
TU831404 lncRNA downstream 72618 62371776 ~ 62372044 (+) True G732007
XM_021613224.2 mRNA upstream 242414 62034615 ~ 62046177 (+) True LOC110530301
XM_036986879.1 mRNA upstream 913127 61370585 ~ 61375464 (+) True LOC110530952
XR_005052928.1 mRNA upstream 943706 61343796 ~ 61344885 (+) False LOC118965539
XM_021613210.2 mRNA upstream 948979 61327148 ~ 61339612 (+) True LOC110530280
XM_036985914.1 mRNA upstream 982913 61297965 ~ 61305678 (+) True LOC110530279
XM_036985946.1 mRNA downstream 322087 62621245 ~ 62827290 (+) False LOC110530308
XM_036985947.1 mRNA downstream 322087 62621245 ~ 62837405 (+) False LOC110530308
XM_036985940.1 mRNA downstream 322107 62621265 ~ 62881609 (+) False LOC110530308
XM_021613237.2 mRNA downstream 322108 62621266 ~ 62881609 (+) False LOC110530308
XM_036985939.1 mRNA downstream 322108 62621266 ~ 62881609 (+) False LOC110530308
TU829919 other upstream 417031 61867561 ~ 61871560 (+) False G730694
TU829914 other upstream 427472 61860485 ~ 61861119 (+) True G730690
TU829843 other upstream 472981 61815071 ~ 61815610 (+) True G730629
TU829804 other upstream 591950 61696147 ~ 61696641 (+) True G730590
TU829659 other upstream 659398 61628553 ~ 61629193 (+) True G730464
TU831449 other downstream 103791 62402949 ~ 62404191 (+) True G732052
TU831769 other downstream 498543 62797701 ~ 62882948 (+) True G732350
TU832575 other downstream 900342 63199500 ~ 63204896 (+) False LOC118965541
TU832811 other downstream 1076338 63375496 ~ 63385250 (+) False LOC110530316
TU832812 other downstream 1076338 63375496 ~ 63427667 (+) True LOC110530316

Expression Profile