RNA id: XM_036985941.1


Basic Information

Item Value
RNA id XM_036985941.1
length 5921
RNA type mRNA
GC content 0.48
exon number 23
gene id LOC110530308
representative False

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 62621245 ~ 62881609 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TTCCTTCCAAGCAAATCTCACCCCTAAACTGCATTGAAATGATCACAAATAATCTTTAACCATGTGACAGAGCATTTGGGGATTTATGCGAAATAAGAGGCGTTTATTTTCTGCAGGCAACAATCCGGAAATGTGTGCTTTGCAAGCGCATCCCCCTTGCTCTTCTTCCTCCTGCATGCAGCCGTATTGAAGTGAAGCTGGTTTGAACAGAGACGAGAGGGATATACGAAGCAGCGGTGATTTCAAGCATTAGGATGGGTCTGAGATTGCTCTTCTCGCTCGCATGGATTCTTGCCTTCAAAGCTGCTAATATTCAAGGTTTGAATACCGTCGAGGACCATTCCCAAGATTTGGAATGCAAAATGAAAAGCGTCACCGTGTCTGCGCTGCCGTTTTTGAGAGAAAACGACCTGAGCATCATGCATAGTCCGTCGGCCTCCGAGCCCAAGCTTCTGTTCTCCGTCAGAAATGATTTTCCGGGGGAAATAGTCGTCGTGGACGATCTAGAAAACACCGAGCTACCCTTTTTCGTCCTAGAGATCACAGGAAACTCTGAGGACATTCCTCTGGTGCGATGGCGACAGCAGTGGATGGAGAATGGCACACTGCTCTTTCACATCCACCACCAAGATGGCAGCCAGAACCTCCCCGGCCTGTCCGCCACAGACTACCCTGCCAGCGACTCTGCCGAGGAAGAGTTACGCATCCTTCACATCTCTGTCATGGGAGGCATGATTGCCTTGCTGCTGTCCATTTTGTGCCTGGTCCTTATCCTCTACACGCGCAGGCGATGGTGCAAACGCCGCCGTGTGCCCCAGCCCCAGAAGAGCGCCAGCGCCGAGGCAGCCAATGAGATTCACTACATCCCTTCGGTGCTGATGGGAGGCCAGGCCAGGGAGAGCCTGAGAAACTCCAGGGGCCAgggtcacaattccagtggcacGCTCAGCATCCGAGAGACACCCATCCTGGACGGATACGAGTATGACATCACTGACCTGAGACACCACCTTCAGAGAGAGTGCATGAACGGAGGAGAGGACTTTGCCAGCCAGGTTACACGCACCCTGGACTCCCTTCAGGGCTGCAATGACAAGGCCAGCATGGACCTCACACCTGGGGAGTGGAGTGACAATACAAAGTTGTCCCTAATGAACAAGTACAAGGACAACATCATAGCCACCAGCCCCATTGACAGCAATCACCTGCAGCAGAACACTCTCCTCCCCCACAACACCTCCACCAGTCAACGCAAACAACGTCTGTCCAGCAAAACCCGAGCGGGTTCAACCTTCTTAAACCCGGACGGGGACTCGGGCACGGAGGCCGACAGCGAACCTCAGCTGACCTTTTACACTGACCCCAATCGCAGCAGGCGCCGCAGCCGAGCAGGTTCCCCACGAAGCCCCATCAATAAGACCACCCTGACTTTGATCAGCGTTGTCAGCTGTGTGATCGGCCTGGTGTACTCCTCACACCTCTCCTGTGGCCTCAACGTCCGGGTCATCCTCCATGTGCCTGAGCACCTCATCGCAGACGGGTCCAAGTTCATTTTGCTGCAGGGCAGTCAACTGGATGCGTCTGACTGGCTGAACCCGGCCCAGGTGTTGCTATACTACCAGCAGAATGCCAGCGGGCCTTGGATCAATGAGCTGTGTGGCCGCCGCATTCTGGACCCCTGTGAACACCAGTGTGATCCAGAGACAGGTGACTGTCTATGCTTAGATGGCTACATGAAGGACCCTGTCCATAAGCATCTCTGTATTCGTAACGAGTGGGGTCCAAATCAAGGACCCTGGCCTTACACTATTTTCCAGCGTGGTTTTGATCTGGTGATGGGAGAACAACCATCTGATCGCATTTTCAGGTTCACATACACATTGGGGGAAGGGATGTGGTTACCATTGAGTAAAAGCTTTGTCATTCCACCTGCTGAGCTGGCAATCAACCCATCAGCCAAGTGCAAGACTGATATGACTGTCATGGAAGATGCTGTGGATGTGAGAGAAGAGCTGATGATCTCCTCATCGTTTGACAGTCTGGAGGTTTTACTGGACTCGTTTGGCCCGGTGCGTGACTGCTCAAAGGACAACGGTGGTTGTAGCCGAAACTTCCGCTGCATCTCTGACCGCAAGCTTGATTCCAGTGGATGTGTGTGCCCTCCGGGACTGAGCCCTATGAAGGATGGCACAGGCTGCTACGACCACCACATTGGCATCGATTGTTCTGATGGCTTCAACGGAGGCTGTGAACAACTGTGCCTCCAACAGCTTGCCCCCCTGGAGGATGACCCCACCCTCTACAACATACAGATGTTCTGCGGCTGTATTGAGGATTACAAGAGAGGTCAAGATGGTCGTTCCTGCCAGCCCTTGTCTGAAGCCTGTACTGAGGGACTGGACTGTGGGGAAACAGCTGACGTCCCAGCCAACCAAACCGTTTTCGGGGACCTCTTCTATGGCTACAACAACCATACCAAAGAAATCATCTCTGGTCAGATCCTCAAAGCTACCTTCAGGCAGAAGAACTTTGCCCGAGGCATCGAGCAGCAGCTCCCAGatggcatggtggtggcatcagtGCCAACCGACGTGCAGTGCCACGAAGAGCTGTCGGACCCAGTCCCTGATCCAGACTATCTCACAGGAATGGTGAACTACAGTGAGGTCTCTGGGTACCCACTCATCCAGCATTGGAGGCTTAGGTCTGTCCTGTACCATGTCAAACTGAACCAGTGGGTTCTCTCTCAAGCTTTCAGCTCTGCCATCCACTCCCTGGATGGTGCCACCCTCCGCCATGATTTTGTCTCCATCCTCAGGGAGTTTGGTAATCACTTTGTACAAGAGGCTGTGTATGGCTTCGAGGAGGCCTGCACTATCTGGTACCCCAACAAGCAGGTCCAGAGACAGCTGTGGCTGGAGTACCAGGACATCAGCAAAGGGAATTCCCCATCAGAAGAGTCAGAGGAGCGCGACAAGGAGCCCCGGACCCTGACCTACCCAGCGTACATCGCCAGCCTGCTGGACTCTGGTGCCAAGCGCATGGCGGCGGGGGTTCGCATGGACTGCAGCAGCCAGGGCCAGTGTCCGTACTCCTGCCACCTCTGCCACATGAGCCCTGGGCCTGGGCGTCCAGCCGAGCCTGTCCTGCTCCAGATCACTAAGGCCGCCCCGCTCTACGAGCTGGTCTCCAACAACCACACCTACCAGGCACTGCAGGAGGCCATGATGAGCATGCTGTGGTGTTCTGGGAAAGGTGACGTAATCGATGACTGGTGCCGTTGTGACTCAAGTGCATTCGGGACGGATGGACTGCCAACATGTGCCCCTCTCCCTCAGCCTAGGCTCAGGTTGTCCCACTCCTATGAGCCCAGCAGTTCATTGGTCATCGTGGAATGGAATCACACTGAGCCACCAATCGGGGTGCGGATCGTGGATTATCTCATTAGCcaggagaaagtgacagagaggacagaccacTCCAAAATGGAGACAGAGACAATGTTGAGCTTTGTGGATGATATCCTGTCTGGGGCCAAGTCTCCGTGTGTGATGCTTGGGGATATCCCTGACCTCCTGACCTCCTCCGTCAGCATGATCATTCGCTGCCTGGAGCCAGACACCACTTACATGTTTAGGCTCTGGGCAGTGGACAACACAGGCCGTCGCTCCAGCCCAAGTGAGGTCACCATCAAGACCCCCTGCCCTGCTGTGGATGATGTCAAAGCACAAGAGATTGCAGACAAGATCTACAACCTGTTCAATGGTTACACAAGTGGCAAGGAGCAGCAGACGGCCTACAATACGCTGATGGATCTGGGATCTCCCACCCTACACCGTGTGCTCTACCACTACAACCAGCGTTATGAGAGCTTCGGAGAGTTCACCTGGAGATGCGAGGATGAACTGGGGCCTAGGAAAGCTGGTCTGATTCTCTCCCAGCTGGATGACCTGAGTGGCTGGTGCAGGGGTCTTCTCCAGGAGCCCAAGATTGGCCTGCGCAGGATGTCCCTCAAGTACCTGTCCTGCCGCTACACAGACACCAAGGCCTTTGGTCTCAACTGGGTGGACCTGGGCCAGGATGTGCGAAAGGCCTGCGACGAACAGAACCTGCCAGTCATGTACAATGATTATGGGGAGCCCAAAGAACGTTGAACGTCACACAACAAATAATGGTTCTTGAGGAGTTGGAAGTGTGCTTTTGGGGTTATCGTCATGTCTGCTTTTCAAATATTGTATGTTCTAACCCATATTTACAGTTATAGGAACCTGATTTCAAGGTAGGGTGTATTTGAGAAGCAAATAGGGTTTATTAAAAAAATTACTAGAGCAAGGTATAACAGTAATGCTTTACTGCATTTAGACAGCACTTTTCATGACTTTTGGGAAATTTGGAAGTTGCACCAACAATCCCATCCCCAAAATGTATATATTATGATGGCGAAGATTCAGTTATTTAACATGTTGAATGTAGTATTCAAGTATAAATTCATATTTAAGCTGTTGTACATGTATGGGCAGTATATGAATTTGTGGTAAATTTCAGAAGTTTGGGAGTTCATGTACAGTTTGACTTGGTTTTAGTCTCTAAGGGCTCTATTGAATCCGCATTGCGGAAGTACAGCTTTACAGAGTGATTGTAATTTAAAGGCGTTGTTCCTGCTTTAGCGTagactgcattcatggtaaacacTGCATATTGGAAATTATCTTTACATTATATTGCGTAATGCTTCAGCTTTACAGACTGATAGAGCCTTAAATGTTTAAAGTTGCCAAACCCAAATGACAGTATTTGCTACATCAATAAATTCCTAATTATTCTGAAATCAAATGGCTATCTTTGAATCAGTATTTCTATTACAAAATGAAAGATAACAGAAAATCAATGTTTTATATTGTTTATCTGTAGTATGTTTATAGATCTAATCCTATCATACTGTATGTGTCTTAAGAATATACATGTGCAACAGGTGTTGTTGATACTGTAAAAACACAAACTCAACTAACATGCCAGTGTttaatacctttttttttattataactGTTCATACATTTACTACAATAGCATTTCAAAGCAGCACACACTTGCAATTAATATCAACCAAATACTGACTGTTTtcttgaatacatttttttggggCTCCTAACACATTCCTTAATGCAGTAGTTGTCCCCATAACATAGACTTGAAAACCAATGCTTGTAGATATTTTCATAGGTTCACCAATGCATTAAATAACAGCACAGAACAGTGGTTTGCTTCTGTAAATATTGTATTACACATGATTTGTATTATAACATTGATAACAGTGGACATCAGCTGTAAGGATATCTTGCATTATGAGAAAGCCATTGGTATGTTTGTTTTTGTGCAATTTGCACGAGAGGTGTGAGCATTCATTATGTAGAGTTGTTATATGTATATTCATTTTGGAGAGGTTTGTTTATTCAATACAGTGAAGTGGATTAGAAAAATGGACAGATTAAAATGCTTAACAAAATTAATTATCCATCAGAAGTGATTCAGAATTGTTACCATACACAACATAAGCTGatgaaaacaacaaaaatctgcaTGTTAGATATAGTAGTTTATGTGGATAATCTAATGTTCCCTTTTTCACTTTGATCTTTGCTATTTCAAAAAAGAATAAAGAATATATTATCAAATGTGGATTGTTGGACGTTCTGGAAAAAAGTTACCTTATCAGTCACCACTTCTAGGCCTTGTTCCTTTTTAGTCAGTTAACTCAAGTCAATGTAAAACTGATGGGAATGTTTCTTATGGATTGTAGAGCCTCACAAATGATGGTATAAACAAAATTACAATTCCAAAAGAcatgtaaatgcaacatgtaaagtgttggtcccatgtttcatgagctgaaataaaagatcccagaaatgatcCATACGCAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU831738 lncRNA upstream 11620 62609410 ~ 62609647 (+) True G732332
TU831450 lncRNA upstream 152930 62404210 ~ 62468337 (+) True G732053
TU831447 lncRNA upstream 219307 62401733 ~ 62401960 (+) True G732050
TU831404 lncRNA upstream 249223 62371776 ~ 62372044 (+) True G732007
TU831401 lncRNA upstream 250727 62370310 ~ 62370540 (+) True G732004
TU831967 lncRNA downstream 5730 62887339 ~ 62887634 (+) True G732543
TU832577 lncRNA downstream 306908 63188517 ~ 63188853 (+) False LOC118965541
TU832578 lncRNA downstream 308064 63189673 ~ 63189980 (+) True G733127
TU832573 lncRNA downstream 317980 63199589 ~ 63206250 (+) False LOC118965541
TU832574 lncRNA downstream 317980 63199589 ~ 63206250 (+) True LOC118965541
XM_021613231.2 mRNA upstream 322109 62288570 ~ 62299158 (+) False LOC110530305
XM_021613241.2 mRNA downstream 89950 62971559 ~ 63003590 (+) False LOC110530310
XM_021613242.2 mRNA downstream 89950 62971559 ~ 63003590 (+) False LOC110530310
XM_021613240.2 mRNA downstream 89951 62971560 ~ 63003192 (+) True LOC110530310
XM_021613243.2 mRNA downstream 177915 63059524 ~ 63187183 (+) False LOC110530311
XM_021613244.2 mRNA downstream 177915 63059524 ~ 63187183 (+) True LOC110530311
TU831449 other upstream 217076 62402949 ~ 62404191 (+) True G732052
TU829919 other upstream 749707 61867561 ~ 61871560 (+) False G730694
TU829914 other upstream 760148 61860485 ~ 61861119 (+) True G730690
TU829843 other upstream 805657 61815071 ~ 61815610 (+) True G730629
TU829804 other upstream 924626 61696147 ~ 61696641 (+) True G730590
TU832575 other downstream 317891 63199500 ~ 63204896 (+) False LOC118965541
TU832811 other downstream 493887 63375496 ~ 63385250 (+) False LOC110530316
TU832812 other downstream 493887 63375496 ~ 63427667 (+) True LOC110530316
TU833063 other downstream 665978 63547587 ~ 63548743 (+) True G733571
TU834206 other downstream 1664671 64546280 ~ 64551140 (+) False LOC110530334

Expression Profile