RNA id: XM_021613242.2


Basic Information

Item Value
RNA id XM_021613242.2
length 3847
RNA type mRNA
GC content 0.42
exon number 20
gene id LOC110530310
representative False

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 62971559 ~ 63003590 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GCATAGGATTTAGTTACGACTCCGGTGCAGTAGGGGGGAGTAATTAATTTTTGCTAGTAATTTCGTTTGGCTAAGCGAAGACAGATTCGAGAGATTGGTTTCTAATTCCCAAAACGTAGACAGACTTTGCGCTGAAGATTTTATTATTCTTGCAACGTTGTTATGGTCGACTTGTTGACAAAAGCCTACAATTTCACCTAAAGAAGCAATCTAGCTAAAAGCAAGCTTTTATGTGTTCGTACATTGTTGTTTTATCTTAGCTAGCGCATTGCCATTAGCTGgtaagctaacattagctagccaaTAGCTCACCACGGATGCGGTGAACTACAACAGGCTTTGGCCTTGGAAGACTTGAGCATCAGGCTTGAATTATGTCAAGCAACCGTCAACCGCAAACTAGCGGTGGAGCGGGTCCTGGGCCTGGAAGTAGCAGCAGTACCGGTGGCACTTCCAATGCTAACGGTGCTACCAGCGTAACGTTAGGCGGCAACGATAGTGCGAATGTGAACAATTCTCCAAATATTGTGCCCTCGCGGACTCTGGCAACAGCTGGCGAGGGGTTGCTTGTACCTGGAGTGGCTGTACAGTCTCCAAGAAGCTTAGCTCCACTAAGCAGATCCAGTTCATCCTCCTCTGGCACCAGCAGAAAACGTCCTCTCCACCAAGCACCTCTCTACAATGGTCTCTTGAATTCCTACGAAGATAAAAGCAACGATTTTGTGTGCCCAATCTGTTTTGAAATGATTGAGGAGGCACATATGACAAAATGTGGACACAGTTTCTGCTACAAGTGCATTCGCCAGAGTTTGGAGGACAGCAATAGGTGCCCAAAATGTAACTACATCATTGACAATGTGGATCAGCTCTATCCAAATTTTCTTGTGAATGAACTTATTCTCAAACAAAAACAGAGATCAGATGAAAAACGCCTGAAGATGGACCATCCGAATGGGTCAAGATGGCAAGTGTTCCAAGATGTCCTGGGCACAGACCAAGAGAACCTAGATCTTGCTAATGTCAACTTGATGCTGGGACTCCTTGTACAGAAAAAGAAACAGCTGGAAGCGGAATCACAAGCTGCTCAACGTCAGATCTTAATGGAATTCCTCAAAGAAGCAAGAAGAAATAAAAGAGAGCAACTGGAACAGTTGCAGAAGGAGCTAAACTTTTTGGAGGAGGATATCAAACGTGTTGAGGAAATGAGTGGACTGTACTCGCCAGTGAGTGACATGGATCGTAACTTGGACAGCACTGTACCTAATTTCGAGGCTCCCTCACCTGCACCCAGTCTTATAGATTCTACAGAGTATGTGAGTCAACCTCCAGGTTTTGGTGGAACTTCACAGGGGAAGAGACAAACATGGTACAACAGCACTCTGGCTTCTCGGAGAAAGAGGCTCACAGCACACTTTGAAGATCTGGAGCAATGCTACTTCTCTGACCGGATGACCCGGATAACAGATGACACCAGGAACTTAAATCAACTGGATGATTTCATGGAGTGTCTCTCAAAGTTCACACGCTTCAACTCTGTGCGGCCGTTGGCGACCCTGTCTTATGCTAGTGATCTCTACAACGGCTCCAGTATTGTCTCTAGTATTGAATTTGACCGTGACGGCGATTACTTTGCCATCGCCGGCGTCACCAAGAAAATCAAGGTGTTTGAATATGGAACTGTGATCCAGGATGCTGTGGACATTCATTACCCTGTCAATGAAATGACGTGCAACTCCAAAATCAGCTGTATCAGCTGGAGCAGCTACCACAAGAATCTGTTGGCTAGCAGCGACTACGAGGGAACAGTCATCCTGTGGGATGGTTTCACTGGCCAAAGGTCAAAGGTCTATCAGGAGCATGAGAAAAGGTGTTGGAGTGTCGATTTCAACCTCATGGATCCCAAGCTTCTAGCCTCTGGTTCTGATGATGCAAAAGTGAAGTTATGGTCTACCAACCTTGACAATTCAGTCGCCAGCATCGAGGCCAAAGCAAATGTGTGCTGTGTAAAGTTCAGTCCAACGTCGCGGTATCATCTTGCTTTTGGTTGTGCAGACCACTGTGTCCACTACTACGACCTCCGCAACACTAAACAGCCTATCATGGTGTTCAAAGGCCACAGGAAAGCTGTGTCCTACGCTAAGTTTGTCAACGGAGAGGAAATTGTATCTGCCTCAACAGATAGCCAGCTGAAGCTGTGGAATGTAAACAAGCCCCACTGCTTGCGCTCATTCAAGGGCCACATCAATGAGAAGAACTTTGTTGGCCTTGCCTCCAATGGAGACTATGTTGCGTGTGGAAGTGAGAACAACTCTCTGTATCTATACTACAAAGGCCTGTCCAAGACACTGCTGACATTTAAGTTTGACACTGTGAAGAGTGTGCTGGATAAAGACAAGAAGGAAGATGACACCAATGAGTTTGTCAGCGCTGTATGCTGGAGAGCTATGCCTGACGGGGACTCCAATGTGCTGATTGCTGCAAACAGTCAAGGAACAATCAAGGTACTTGAACTTGTTTGAAGGTCCATCAGATCTTCTTATCAAAGCCTCTGGAAACTACTGCTCCATTTCATGGCCAGTCTGAGTCTGGGGATTGGAGCATAGTGGCTTGGTTGAATGGAAATTTCGTCATTCAGGATCTGAGGAACTGACCAGGTTGGAAAAATGAACTAAACCGAAGTCCTTTGATTTTTAATGAGCAAGAATACTTTGGAATAGACTTTGAGCGGATCGTACACTAGTATAGTGGATGTATATAATTCAGTGACATTGAGGGCCTTTCTGCACAAAAGTGGAAGATTAATCTTTTGAAATCTTTTTGAATAAAGTTATTGACCAATAGAACATTTTAACATGATTTGAGGTTGAATTGAAATGTTATTTTTAATAAGAACTTGTACAAATGTATTTCAATAGAGGTACATCCAGCAAGAAGCTACATTTTAAAGGCCAAAGCACAAGTGAAAACGAAAATAAAATGCAAAATGACTCATCTTTGTATGAATGCTTTTTGAGCCCATTGTCATCTTCAGTAGTTTTTGTTTTACCCCTATGTTTGGCCTATGTGTTTGATGATTCAAGGAATGGCAACACCTTTAAACTGGACTTGTTTTCGTTCTGCAATGAAGTTTTCAATGGTGTGGCTTTGCATTAAGAATGTTAGGTGTTGACAATGTTTGAAAACTCAACAGAAGAATCAGTGACTGAGACATTTCACTCATGCTACAGTATATTTCTCTTATGTCACATTAAACTAAACATCTATTCGATAATACAAATCCTGTGTCAAATACTTTCAATTTGTATTAAGTCATGATGCATGTTGCAACCAGTACACATCAACACATGAAATCAATTGGATTTGCTAGACAGCCAAGACTTACCTATGATCTGATAAACGACCAAgagatgttttttatttgtatatattaATAAATTATTTGCAGAGAATTTTGTCTTTGCATTGAGTTATTCTTGGTTTTAAAAAAGAGCTACGTAACACTGAAATTGAGTAGTGTAATGCCAAATTATAAAAAGGTTCTGACTTCGAAGTAACTTCTGTGATCTTGATTACTTTGATACTGTATCTTCCCAGTTTGTACAGGACCGCCTCCTTGAACAGTCAACTTGCCATTAATTATTTATAGGACGGTTTTCCTTGTTACCCCTTGAGTTCCTAAGTATTATTTTCTATAATTAGACATACTGGTATCTGAAATATATTCAGAAAATCCTCTCCTTTTTCAGTTTCGGCTTACTTTGACTATTACACAATTATTGTAATTTGTACGTGTTTAATTGTACCCCTCAATTCCCATGACTtgtaactgaaataaataaattaactg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU831967 lncRNA upstream 83925 62887339 ~ 62887634 (+) True G732543
TU831738 lncRNA upstream 361912 62609410 ~ 62609647 (+) True G732332
TU831450 lncRNA upstream 503222 62404210 ~ 62468337 (+) True G732053
TU831447 lncRNA upstream 569599 62401733 ~ 62401960 (+) True G732050
TU831404 lncRNA upstream 599515 62371776 ~ 62372044 (+) True G732007
TU832577 lncRNA downstream 184927 63188517 ~ 63188853 (+) False LOC118965541
TU832578 lncRNA downstream 186083 63189673 ~ 63189980 (+) True G733127
TU832573 lncRNA downstream 195999 63199589 ~ 63206250 (+) False LOC118965541
TU832574 lncRNA downstream 195999 63199589 ~ 63206250 (+) True LOC118965541
TU832597 lncRNA downstream 252000 63255590 ~ 63255998 (+) True G733144
XM_036985941.1 mRNA upstream 89950 62621267 ~ 62881609 (+) False LOC110530308
XM_021613243.2 mRNA downstream 55934 63059524 ~ 63187183 (+) False LOC110530311
XM_021613244.2 mRNA downstream 55934 63059524 ~ 63187183 (+) True LOC110530311
XM_036985953.1 mRNA downstream 184843 63188433 ~ 63206246 (+) False LOC118965541
XM_036985954.1 mRNA downstream 184843 63188433 ~ 63206246 (+) False LOC118965541
XM_036985952.1 mRNA downstream 195803 63199393 ~ 63206246 (+) False LOC118965541
TU831769 other upstream 88611 62797701 ~ 62882948 (+) True G732350
TU831449 other upstream 567368 62402949 ~ 62404191 (+) True G732052
TU829919 other upstream 1099999 61867561 ~ 61871560 (+) False G730694
TU829914 other upstream 1110440 61860485 ~ 61861119 (+) True G730690
TU829843 other upstream 1155949 61815071 ~ 61815610 (+) True G730629
TU832575 other downstream 195910 63199500 ~ 63204896 (+) False LOC118965541
TU832811 other downstream 371906 63375496 ~ 63385250 (+) False LOC110530316
TU832812 other downstream 371906 63375496 ~ 63427667 (+) True LOC110530316
TU833063 other downstream 543997 63547587 ~ 63548743 (+) True G733571
TU834206 other downstream 1542690 64546280 ~ 64551140 (+) False LOC110530334

Expression Profile