RNA id: XM_036985952.1


Basic Information

Item Value
RNA id XM_036985952.1
length 4289
RNA type mRNA
GC content 0.42
exon number 2
gene id LOC118965541
representative False

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 63188433 ~ 63206250 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TATGACCAgcgagactctctctctctctctctctctctctgacatcactGGGAACTTGTGTGTATAAAGTAAACACAAGAATGCAGCGCGTCAGGCAAGGGAGTGTGAGCACAGACAGAGGGCCCTTTCTTACACAGGGTGGGCAGGGCAGGGAGAAGTGACTCTGCCCTGAGAGAgtgacacacacagggagagaggaagagagagagaggcagaaagagcgTAATTCAATACAGACCAAGTATGGGGCAAAATTGAGAGCTTAGAGTATATCAACAAAAAGCAGCAGCAGATATTGAAGAGGATATAcaaggaagaggaaaggaggaagaggagcttTACTGGCCTGGACTTCTAAAGTGTTTGCCGAAAATCTCTCAGAGCCAGAGGAGAATGGATTAAAATAGACAGGAGACTTCAGAGGACCTGAGGTAGAATCCCCAAATCCCAAAAGAGGGACACAAACAAACTACTCTGAGAGGCAGACTCCATAGACCTTCCCATCGCAGCAAGGAAAGATCGGAATCATTACAGAAACTGAAGGATTTCAAAGGAAAACGTCCATCTCTCATAAAACAATTAATCTTTGGTCTTCAAACTTTCTTAAATAATGCTTTGGTCTTTAAACCCCCAGACAAGGCACttaaggaaggaggggaggataaAGAGATTCTCCCTGCATCAATGAATTTTCCAGTCTCTTGCTATCCCCCCTTGGCATGTGCTACTATATCAGCAACATCTTCACTATCAAGAGTTCACAAGCACTAGTTCAGGGTCAAATCACCATAGAAACAATCCCCTTCCTGGTAACAGCAACACCCTTGACTGACTAATTCAATAATCTATCCTTGTTTGCTATTGTGGTTGGCTTCTTCAATAGATGACCCTCAAAAGGAGTTGCTAAGACACTCACTGTCAGTGAACCATGAAGGAAGACATCTTGGATTTTTTCAGTAACTTGTGGAAGGTGGCCACCACCAAGCATGACCAGGGGATCTACAATACAGTCTGCCTGGTGGTGCTGCTAGCCCTGCCTATGGTGGTGCTCTTCACTTCTCTGGTGGTGTgctgccactgctgctgctgtcgcCGGGCCAACTCCACTGGTTGCTGCGGAGACAGCCCAAGTTCAGACACAGCAAAATCagacaaaaagaagaagaagagtccCAAAAATGAGGACTTGTGGATCTCGGTCAAAACAGGACCTATGACACAAGACAGGGTTGCCCTGACGATGGTGTAGTAGTCGTGACTGATGTTCAGATAAGGTtgaattattttgtatttatatgaAGCTCTTTTTTACTGCAATGTACAGGTACATAATGCCGGGCAAGGCCAGCCTTAGCCTTTTAAAGGCCCTAAGCGATATTTGTTTTtaagttttaaagttaatttcctgcaattctacacattttgcaatggggtGTACAGAAAATGTTGAAGTTTTAAATCACCTTTTcccagttctacacattttgccatggcgcAGAAAGAACttttgcaattttataacaaatttcatgccattctacacattttgccatggggtagaGATACATTTTTTGACCGTTTGAAAGCAACTTTCCTGCAATTCAACATATTTTGCCATGATTTAATGATACCGGAGTGACAGTGACGAACAAAATCAACGAGGGCCccatggaggtcagggcccctagGCACGTGAACTGCGTGCCCAGTCGGTATTCAGCCATGATTATGCCTGGAGCCGGCACTGGTGTTCAATATGCTTCATAGAAACTCTTGAAAGAGACTAAAAGAGCCAATAATATgtgattgattgtgtgtgtgcgtgcatgcatatgTGTGCCTGTGCATATGCACGTACGTGTTactctcaaactcaactctgtaCCTTGAAGCTAGTTCCACagcattttttttattgtttccTTCGAATCacagactgatttagacctgagacaccaggtgtgtgcaattacctatcaggtagaacagaaaaccagcaggctccagacctcaaagggtaagagttgaatacccctgtgTTAGAGTGTGCACTCAACCAGAAGGTTGAGGACTGCTTTTTATTTCCAATGCTGGAGGCCAGCAATCTAGCATTGTGATTCGGTTAGAAAGATCATGTTTTTTATAGGTTAGACCATTTCAAGTTCAAAGCACTTGCAGTTATTGCACTTACAATGTGAACAATGTGAACTTATGTAACTACTTTGAAATCTTTTGCTGTATTTGCTATATCCACTAAATGGAGATCTCAATTCCATTCATGAGTTGACCATCAATCGCTGAATTGAATAGAACAAAGTGAAGCACTGAGATCTTTCATTTACATCACCGTAGAGTATGCTGAAGCTCAGTATTGTTGATGAATGAGTGTTTCTACCCAACAGTTCCATGTGTTACGTTACCTTATGCTCAGATTGCCATGTGTACTGTCTTGCACTGTCCCTATTGGTTCATAAAATCATTAtgcgttattattattatctccAGGCTCTCAGACTTTGGGGTGCTAAGTGGATCCTTCTTACATCTTTATCCCTCAGTGCCAATAGCCATCATTTCACATGTAGTGATATTTACTGGCATATCATAGTTGAGGTACTATGCCATCATTCAGTATTTTCTACACCATTGTGTTGATAAAATATAAGTTGTGTGCATATGGGGCATTGTGTGCAAAATGCAcacattttggggcggcaggtagcctagaggttagagtgttgggccagtagccgaaaggttgctagatcaaatccctgacctgacaaggtagaaatatgttgttctgcccctgaacaaggcagttaacccactgttcctaggctgtcattgtaaataagagtttgttcttaactgacttgcctagttaaataaaataaaaatgtatgcaaATAGAAGTTTATAATTGATTTACAAATCCGGTGACAAATCAGtttcatttgttatttttttattatccCTGTTTTCAGATCCTTATTTTGTGCCTAATAGGCTTCTCTATTAGTTATTCACTAAACTTTGATCGAGACAAATTATGCATTagaacatacaggtaactgacaaaataaaggaaacaccaacataaatagGGCGTTGGGTCACCACAAGCAGCAAGAACAGTTTCAAGGTGCTGTGGCATAGATTCTACAGTCTGGAACTCCACTGGAGGGACACAACACCGTTTTCCCACaataaattccataatttggtgttttgttcaTGGTGGTGGAAAACTCTGTCTCAGGCATGATCTGGTGAATGaggcatgcatgcatgcacacacacacacacgcacgcacgcacgcacgcacgcacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacactttaaacccccctaagctcctttgagacccctctttcaaagttaATGAGATTTCTTCTTCTAGTCATGCCAAAACAATGGGAAACTGGGCATTTTAcatatgaccctaagcatgatgggatgttaactgcttaattaactcaggaaccacacctgcgtAAAAGTACTTGCTTTCAATATAATTGGTATCACTCATACAGGGCTATATTCAATCAGATCCACTTTAGCCGACATCCAGATAGCGGTTGTTTTGACGTGTCAGAGGTGTGTTacagctgtcaaatccacaagcggctcctGGCATTATAGCCTACCTAAAGGGGACATTTCCATTGACTGCACGGAGTCGCATTAAGATAAATCTCCTGCAGCCTTGTTTACAGgtttgaacactggaatgtgagatgtaatctacacctcgattagtctgatagaaatcctcattactttaatgattttttgtattatttctgTATAGCCTTCACTCTCGTTTTGAACTTTTAATGCAAGGGTGATTGATGGGTTACAATGAGCAAGAACAGCTGCTCTCCaatttgacagctccaacacaGTTACACCTTCGACACCGCCAGAACATCAGTTATGAGGGTGGCGGCTACCGCCAGTtaatgcttgatctgattgaGTCTAGGccttactcaagtgtttcctttattttgtcaggtACCTATATATTCTGTCTGTTTGTCATCACACAAGAAATCGCTGAGGTGATACATTTTCGAGTTATGAGCTCAGGCCACACTGGCGGCTGCATGAATCATTTATCCTGTCATTTGATTTTACAAAACAGCTGGAGAAAAGAGGGACAAAATAAAGTATTTTTGTAGCTTT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU832578 lncRNA upstream 9413 63189673 ~ 63189980 (+) True G733127
TU832577 lncRNA upstream 10540 63188517 ~ 63188853 (+) False LOC118965541
TU831967 lncRNA upstream 311759 62887339 ~ 62887634 (+) True G732543
TU831738 lncRNA upstream 589746 62609410 ~ 62609647 (+) True G732332
TU831450 lncRNA upstream 731056 62404210 ~ 62468337 (+) True G732053
TU832597 lncRNA downstream 49344 63255590 ~ 63255998 (+) True G733144
TU832621 lncRNA downstream 57626 63263872 ~ 63264428 (+) True G733168
TU832622 lncRNA downstream 58278 63264524 ~ 63265017 (+) True G733169
TU832623 lncRNA downstream 58855 63265101 ~ 63265404 (+) True G733170
TU832625 lncRNA downstream 61083 63267329 ~ 63267548 (+) True G733172
XM_021613243.2 mRNA upstream 12210 63059524 ~ 63187183 (+) False LOC110530311
XM_021613244.2 mRNA upstream 12210 63059524 ~ 63187183 (+) True LOC110530311
XM_021613241.2 mRNA upstream 195803 62971559 ~ 63003590 (+) False LOC110530310
XR_002474331.2 mRNA downstream 45922 63252168 ~ 63258568 (+) True LOC110529126
LOC118965630 mRNA downstream 70281 63276527 ~ 63279438 (+) True LOC118965630
XM_021613247.2 mRNA downstream 74760 63281006 ~ 63288829 (+) True LOC110530313
LOC110530316 mRNA downstream 169795 63376041 ~ 63430577 (+) False LOC110530316
XM_021613249.2 mRNA downstream 229113 63435359 ~ 63466410 (+) False ptch2
TU831769 other upstream 316445 62797701 ~ 62882948 (+) True G732350
TU831449 other upstream 795202 62402949 ~ 62404191 (+) True G732052
TU829919 other upstream 1327833 61867561 ~ 61871560 (+) False G730694
TU829914 other upstream 1338274 61860485 ~ 61861119 (+) True G730690
TU829843 other upstream 1383783 61815071 ~ 61815610 (+) True G730629
TU832811 other downstream 169250 63375496 ~ 63385250 (+) False LOC110530316
TU832812 other downstream 169250 63375496 ~ 63427667 (+) True LOC110530316
TU833063 other downstream 341341 63547587 ~ 63548743 (+) True G733571
TU834206 other downstream 1340034 64546280 ~ 64551140 (+) False LOC110530334
TU834286 other downstream 1412794 64619040 ~ 64620007 (+) False G734690

Expression Profile