RNA id: XM_021613247.2


Basic Information

Item Value
RNA id XM_021613247.2
length 4280
RNA type mRNA
GC content 0.44
exon number 15
gene id LOC110530313
representative True

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 63281006 ~ 63288829 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TAGTTGAGGAATTTTCTGCGCGGTCATGTCAGATGGATACGAATTGGGTTTGAGGACACCCCTCCGCTGAAAGGATCAATCGTTGAATCAGAGGATTGTTGGAAAATATTTATTTTGGATGAATGGATACCCCATGTTTCGCCACCTCTCAGGGTAGTTCATGTCTCACGATGAATCCGAATCTATTCAAACCTTGTCCAGAACGTGAAGTTATTCCTCCTACTAAACCGAACAGGACTAAATCAGAACAAATCAAACCAGAACTCGCCCAGGTGGTGACAGATTCCAAGACAGGGAAGTCTTACAGCAAAGGAAAGCTTCTGGGAAAGGGTGGCTTTGCACGATGCTATGAAATGACAGACCTTTCTAACAAGAAAATGTATGCTGTAAAGGTGATACCACAGAGCAGGGTGTCAAAACCTCATCAGAGAGataagATAACAAATGAAATCGAGCTTCACAAAACCCTTCATCACAAGCATGTGGTCAAGTTCTCCCATCATTTTGAAGACCAAGACAACATCTATATTTTCCTTGAACTCTGCAGTAGAAAGTCCCTGGCACACATTTGGAAAGcaagacacacactgacagacccaGAAGTGCGGTACTACCTCCGGCAGATCATTTCTGGGCTGAAGTACCTTCACAATAGGGGCATCCTTCACAGGGATCTCAAATTAGGGAATTTCTTTGTGAATGAGAACATGGAGTTGCGGTTAGGGGACTTCGGCCTGGCAGCAAAGTTGGAACCAGTTGAGCAGAGGAAGAAAACTATATGTGGAACACCTAACTACCTTGCACCTGAGGTGTTGAACAGGCAGGGCCATGGAACAGAGTCTGACATCTGGTCACTAGGTTGTGTAATGTACACGCTGATGTGCGGGAACCCTCCCTTTGAAACCCTTGATCTGAAGGAGACGTACAAGTGTATAAAGGAAGTGAAATACAACCTGCCCTCAACCCTGTCCCCTGCTGCTCAGAAACTCATCTCTGGCATTCTGCAGAAGAACCCCAGTGACCGCCTCACACTGGACCAAATCCTCAACCACCAATTCTTCACAAAAGCTTTCACCCCAGACAAGCTGCCTCCCAGCAGCTGTGTGACAGTGCCAGAGCTCAACCTGCCCAGCCCTGCCAAGAAGTTTTTCACCAAGATGGCCAAGAGTCTTTTTGGAAAGAGAAAATCCAAAGTGGATAACAGCCATTGTGAAGAGCGGGAGAGCATCTCCAAGCTTGTGTCTGGCATCGTCAAATGCTCCATTAGTCGCCAGATAAGCTATAAAACAGTTGGAGCCAATGAGCCTCCCACTCCCACAGTAGGCCAGCAAGTCAGCTCTGGTCCGCTGGATACTCCAGCCGAGGAAGAGTCCAGGAAGTCCGCAGCATCAGGCTCCTTTAAAGGCACGGTGGCCAGCAGCACAGAACtgtgtgaaGATGGCGTTACCCCTGCTGCTATCGCAGAGTCAGCCATGAAGGTCCTCAACAGCTGTTTGTCTGCTATGCCTGCAGCTACAAGAAATCCACCTTGTCTCTCCAGACCCAAATCATTTATCTGGGTCACAAAATGGGTTGATTATTCCAATAAATATGGCTTTGGCTACCAACTCTCAAATCAAGACATTGGTGTGCTCTTCAACGAGGGGACACACTTGAGTCTGTGTGATCAGCGCAAGACTGTGCACTACTGCATGACCAACAACAAACACTTCACCTTCCAGGCCAGTGCTTTACCAGAGCAGCTCTGCAGCCAGAAGCAGATTGTGGAGCTTATGGCCAACTACATGGAACAGAACCTCATGGAGGGTGGAGACGTCCACTGTGAAGAACAGCCTCCCTCCCAACCACCGCTCCTTCTGCAGTGGGTGAAGACCGACCATGCTCTGGTGATGCTCTTCAACAACGGTACCCTGCAGGTGAATTTCTACACTGACCACACCAAGATCATCCTGTGCAAGTCTTCTGGCTCCTACCTACTGACCTACATCAGCCGAGAGCGTGTGTCCTACACCTACCTCCTGAGCATGCTGTCAGAGATGGGCTGTTCTGCCGAGTTGCGGCACCGCATGCGTTACGTGGTCCAGCTGCTCGAACACCGCGCGGATTCATAATGGACTCCTGCCTCACAGCTCCAGAGTAAAGTGAAGTTTCCCGTAAatgctgatctagggtcagttttGAATTCCCCCATGGTGAAGGTTAGAATgtgggaggggaagctgatcctggatctgtacCAAGGGAAAACTTCACCCCAGTGCCATAACGCCTGGCTCTATCCACAAGCATCAGCCAATCAACCCGCTGCTTTCTGCTTCCACTGGGAGCAAATAACCAGGAGGCTCTGTTAATTCAGGGAGTCTCCTATCTTCGGCTAGTGTCTGGCCTCTTTGGACTATGGTGCACATCTATCTTTTTCAGTTATTCTTTTTGGATGAAGCCTGACAACAGTAACACACTACTGGCTTGACTCACTTCATGTGCAcaaacaacctgaccctgttctcTGAGTAGATGCTCAGACCTGATTCTGAAAATGTCAGGCTGGGATCACAAGCTGCCTAGTGACCAGCCCCATTGTGGTTGAAAAGCTGTGTGAAAAGGGGCTCTTCTGCTTTTCATGCTTTGACTTCACTTGCCTTTTATGATAATTGAACTTCACTAATTGGTACACAATGGCATAAGGAGGGCAATGAGTGTGACACTATTTGCACAATCTCTTATTTCTTTGGATTGGCAGTAATTTTACCACAAATTGCTGAATTTTTGTTCAGTTTTTAGCTATAGATAccaaaatataattattttaaCCTTAACTGGTTAATGTGCAACTCATGCCAGCATtgcccaaaaatatttttggcaTGTTCTGGTAATTCTCACCAACGTTATTGGGCAGAAGTATATTTGACCATGTTTTTACATTTGTATGAAAAGTTTCACAAATTAGTTGCTTATTTTTAGACCTGttgtaagaccctatgatctgtgaactgtacatgatacagacagTGTCTTCGTTTCATTATTCTCCTTAGTGTGCTCTAAATTATGGAATATCTCGATTCTGGGGAAAAACATATCACTTCATGTTTGAGACATTTAGCATTATCTCAAAGTACCTGTTTTGATTTAGCTTATTCTTAGACATAGTTTGGAACCAAATACTCTTCAAACAAATCACACTTCCAGTGGGCTCTTGTACTTTTAAGGAAATTACATAGGTCATTATACCAACCACAGCCCTCCTTTTAGGATTGCACATTCAACAAATCACCATTCACTGTTTTGGTGGTGCTCATAAAATTGATATCTTCAGAATTACTAGACCACACTGGAAATGTGCTATacttgtatgtggtgtgttttgttccAAACATGGTATTAAaattaacaaaatcaaaaacgGTGCTTTGAGAGATTCATACTAATATTTtttatgtgaaaatgtgtttcaAAATCTTGACATGTTAGCGCACAATAAGGAGTGTAACGACACCAAGATGTCTATCATGTCCGGATCATAAGGTCTTGCAGGAGGTATGTGTATAGGTCTACAAATGGCCACTCATCAGGATTTTCTGAAGTTGCAAATGTGAAACAGCCTTTTGCCCAATGAGGTCTCTGAGAAGTGCCAGAACAATGagatcaaaaatatattttgtcttATGTTGCCGTGGAATCGCCCTAATATAGTTTTTCTGTGTTCAGGAGTGAATGTGTGCACTCCAGTTGAAATTGGCTTTGCTAAATTGCATTGCTGTTTGGCAAAAGGGATAAAGTGCCTTTTTGAGAATTCTGTATTGTGCAATAACAGCCGTTTCGAATGTCAGGTTGTGGTGTCATGGGAAATGGACTATGGAggcaaatacttttttttttacatggaattGGTTAAATTAAAATGAAGCACTAGTCTCACTACCTGGTATAAGCGTTTGGTAAAATGGTATGATAAACCTGTATCAATATGTAAAATTGCGTTTCGTCATACTGTACTCATCCCTCTTTGGTTTACCTTGCCGGCCATGTCTGCCAAGAGTTGTATCCTTAAACTGTGACCCCTGAGTGCAAGTATTATACAACTTCCGGGTATTGTCTTTTCAAAAATACAACATTGTGAAAGCATCTGCTTTTTCAGAAGAACCTTTATTTTTTTGACAAAtgtctatttattttatttattaatgtGTAATTCTATGGTCTTGACATGTGATATGATCATTATGTACTGTATTTGGGCGAATGGAGGAAAATAAAGTTTATGGTAATCACATTGA

Function

GO:

id name namespace
GO:0006468 protein phosphorylation biological_process
GO:0005524 ATP binding molecular_function
GO:0004674 protein serine/threonine kinase activity molecular_function

KEGG:

id description
K08862 PLK3, CNK; polo-like kinase 3

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU832628 lncRNA upstream 11556 63269241 ~ 63269450 (+) True G733175
TU832625 lncRNA upstream 13458 63267329 ~ 63267548 (+) True G733172
TU832623 lncRNA upstream 15602 63265101 ~ 63265404 (+) True G733170
TU832622 lncRNA upstream 15989 63264524 ~ 63265017 (+) True G733169
TU832621 lncRNA upstream 16578 63263872 ~ 63264428 (+) True G733168
TU832636 lncRNA downstream 2139 63290968 ~ 63293802 (+) True G733180
TU832659 lncRNA downstream 42002 63330831 ~ 63331041 (+) True G733203
TU832660 lncRNA downstream 42554 63331383 ~ 63331697 (+) True G733204
TU832662 lncRNA downstream 46356 63335185 ~ 63335398 (+) True G733206
TU832666 lncRNA downstream 52562 63341391 ~ 63341636 (+) True G733210
LOC118965630 mRNA upstream 1568 63276527 ~ 63279438 (+) True LOC118965630
XR_002474331.2 mRNA upstream 22438 63252168 ~ 63258568 (+) True LOC110529126
XM_036985953.1 mRNA upstream 74760 63188433 ~ 63206246 (+) False LOC118965541
XM_036985954.1 mRNA upstream 74760 63188433 ~ 63206246 (+) False LOC118965541
XM_036985952.1 mRNA upstream 74760 63199393 ~ 63206246 (+) False LOC118965541
LOC110530316 mRNA downstream 87212 63376041 ~ 63430577 (+) False LOC110530316
XM_021613249.2 mRNA downstream 146530 63435359 ~ 63466410 (+) False ptch2
XR_005052929.1 mRNA downstream 270827 63559656 ~ 63561760 (+) False LOC118965542
XM_021613256.2 mRNA downstream 314369 63603198 ~ 63612720 (+) True atp6v0b
XM_021613255.2 mRNA downstream 324533 63613362 ~ 63760514 (+) True LOC110530319
TU832575 other upstream 76110 63199500 ~ 63204896 (+) False LOC118965541
TU831769 other upstream 398058 62797701 ~ 62882948 (+) True G732350
TU831449 other upstream 876815 62402949 ~ 62404191 (+) True G732052
TU829919 other upstream 1409446 61867561 ~ 61871560 (+) False G730694
TU829914 other upstream 1419887 61860485 ~ 61861119 (+) True G730690
TU832811 other downstream 86667 63375496 ~ 63385250 (+) False LOC110530316
TU832812 other downstream 86667 63375496 ~ 63427667 (+) True LOC110530316
TU833063 other downstream 258758 63547587 ~ 63548743 (+) True G733571
TU834206 other downstream 1257451 64546280 ~ 64551140 (+) False LOC110530334
TU834286 other downstream 1330211 64619040 ~ 64620007 (+) False G734690

Expression Profile