Gene
RNA
| Item | Value |
|---|---|
| RNA id | TU832812 |
| length | 1448 |
| RNA type | TUCP |
| GC content | 0.50 |
| exon number | 10 |
| gene id | LOC110530316 |
| representative | True |
| Item | Value |
|---|---|
| chromosome id | NC_048572.1 |
| NCBI id | CM023226.2 |
| chromosome length | 91622588 |
| location | 63375496 ~ 63430577 (+) |
| genome version | USDA_OmykA_1.1_2020_rainbow_trout_Genome |
| species | rainbow trout (Oncorhynchus mykiss) |
| id | name | namespace |
|---|---|---|
| GO:0051716 | cellular response to stimulus | biological_process |
| GO:0006413 | translational initiation | biological_process |
| GO:0043087 | regulation of GTPase activity | biological_process |
| GO:0014003 | oligodendrocyte development | biological_process |
| GO:0005851 | eukaryotic translation initiation factor 2B complex | cellular_component |
| GO:0005085 | guanyl-nucleotide exchange factor activity | molecular_function |
| GO:0016779 | nucleotidyltransferase activity | molecular_function |
| GO:0003743 | translation initiation factor activity | molecular_function |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TU832778 | lncRNA | upstream | 29959 | 63345198 ~ 63345537 (+) | True | G733309 |
| TU832667 | lncRNA | upstream | 32635 | 63342582 ~ 63342861 (+) | True | G733211 |
| TU832666 | lncRNA | upstream | 33860 | 63341391 ~ 63341636 (+) | True | G733210 |
| TU832662 | lncRNA | upstream | 40098 | 63335185 ~ 63335398 (+) | True | G733206 |
| TU832660 | lncRNA | upstream | 43799 | 63331383 ~ 63331697 (+) | True | G733204 |
| TU832833 | lncRNA | downstream | 20044 | 63447711 ~ 63448002 (+) | True | G733358 |
| TU832808 | lncRNA | downstream | 36943 | 63464610 ~ 63465917 (+) | False | ptch2 |
| TU832809 | lncRNA | downstream | 36943 | 63464610 ~ 63465917 (+) | True | ptch2 |
| TU832868 | lncRNA | downstream | 76251 | 63503918 ~ 63505336 (+) | True | G733391 |
| TU832867 | lncRNA | downstream | 77991 | 63505658 ~ 63505981 (+) | True | G733390 |
| XM_021613247.2 | mRNA | upstream | 86667 | 63281006 ~ 63288829 (+) | True | LOC110530313 |
| LOC118965630 | mRNA | upstream | 96058 | 63276527 ~ 63279438 (+) | True | LOC118965630 |
| XR_002474331.2 | mRNA | upstream | 116928 | 63252168 ~ 63258568 (+) | True | LOC110529126 |
| XM_036985954.1 | mRNA | upstream | 169250 | 63188433 ~ 63206246 (+) | False | LOC118965541 |
| XM_021613249.2 | mRNA | downstream | 7692 | 63435359 ~ 63466410 (+) | False | ptch2 |
| XR_005052929.1 | mRNA | downstream | 131989 | 63559656 ~ 63561760 (+) | False | LOC118965542 |
| XM_021613256.2 | mRNA | downstream | 175531 | 63603198 ~ 63612720 (+) | True | atp6v0b |
| XM_021613255.2 | mRNA | downstream | 185695 | 63613362 ~ 63760514 (+) | True | LOC110530319 |
| XM_021613266.2 | mRNA | downstream | 350668 | 63778335 ~ 63802563 (+) | True | ccdc24 |
| TU832575 | other | upstream | 170600 | 63199500 ~ 63204896 (+) | False | LOC118965541 |
| TU831769 | other | upstream | 492548 | 62797701 ~ 62882948 (+) | True | G732350 |
| TU831449 | other | upstream | 971305 | 62402949 ~ 62404191 (+) | True | G732052 |
| TU829919 | other | upstream | 1503936 | 61867561 ~ 61871560 (+) | False | G730694 |
| TU829914 | other | upstream | 1514377 | 61860485 ~ 61861119 (+) | True | G730690 |
| TU833063 | other | downstream | 119920 | 63547587 ~ 63548743 (+) | True | G733571 |
| TU834206 | other | downstream | 1118613 | 64546280 ~ 64551140 (+) | False | LOC110530334 |
| TU834286 | other | downstream | 1191373 | 64619040 ~ 64620007 (+) | False | G734690 |
| TU834284 | other | downstream | 1191508 | 64619175 ~ 64620007 (+) | True | G734690 |
| TU834343 | other | downstream | 1269646 | 64697313 ~ 64697869 (+) | False | LOC110530343 |
