RNA id: XM_021613285.2


Basic Information

Item Value
RNA id XM_021613285.2
length 1535
RNA type mRNA
GC content 0.49
exon number 5
gene id selenop2
representative False

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 64346751 ~ 64349881 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GGCAGTGCTTACCTGAGATAAGGGCTTAAAAACAGCAGTGTAACATTGTATTGCTTAGTTGTGTGAAGCAGAAGATAGGCTCAACGAGGACAGAGGTGAGGTTTGGAGGACATGATGCAGGGTCTCTTGACTCTGTGGCTGTGTGCTGCTCTGCCAGGGCTCCTATGCGCATCGCCTCTGTTAGTAGAAGGGGACAATGATGCCTCCAAGATTTGCAAGCCTGCACCGCACTGGGAGATCAAGGGCCATGGGGCCCCCATGAAGGAGCTGCTGGGAAATGTAGTTGTTCTGGCTCTGCTGAAAGCAAGCTGACACTTCTGCCGCACACAGGCCTCCAAACTAGGAGGCCTGCGTGACAAGCTGCTCCGCAGCAACCTGACAGACGTGTCGTTCCTCATCGTGAACGAGAGGGAAGCCCAGTCCAGAGCCATGTACTGGgagctgaagaggagggcacccCCGGGCATCCCTGTCTACCAACAGGCCCCGCTACAGGACGACGTCTGGGAGGCCTTGGATGGAGACAAGGACGACTTCCTGGTATATGACAGATGTGGGAGACTGACGTTCCACATAGTCCTACCCTACAGCTTCCTCCACTACCCCTACATAGAGGCAGCCGTCAGAGCCACCTACCACAAGGACATCTGTGGCAACTGCACCgtggactccaacacAACCTCCTCAGCTGGGTGGAACAGCACCCGGAGAAACGAGACACTGAGCAGTTCAGAGATGCGTGTTAAtgagacagacagtacagtgAGGTCTATTGATGTCGATACCGTCAGCAACCCAGTTCCAAGTGATGGACCCCAGATGTCAGCTGAGGGGGGTGGTAACATGTCACACATACATCATCAGCATCATCagtacccccaccaccaccagcagcagcatcagcacCACCACAATCATGGGTCAGATGCAGATAAACAGGACTCCAATTAACATTGTCTGTGTCGTTTCTGAGATGAGTAATTGTTAattagcatggtggtggtggtggcttgtGTCAGTGACTTGACAGTCCGATAAATAGTTTTGTATGAATTAAATTAGATTTTGTCTGTGCCTGTCAATTGTGTCTGATAAGGCAAATCTGTACAGTAAACTGGAATTATTTAGGCCCTTGAAAACAGTATGTCTTCCCTACATGTGGTCTGGTGACAGGTCCTGCTCTCCTCTGCAGTTTATGAAGTCTGCAGGTCAAACTCTACGGAGGTGTCTGTAGATAGATGCTGTGCTAAGGAAAGTTGGACTGACAGTCACCGAACCCATGCAGGGCAGTGTGCTGGACTTCAGGGTAtacttgtcaacgtcttgactatatttcctattcattttgcaactttcatttcatgtatgttttcatggaaaacaaagacatttctaagggaccccaaacttttgaacggtagtgcatgATATATACGTTCCGGACTCCGACATAAGATTTACGTTCCAGGTTGCTGCTTGTTCACAATTAAAAGTATGATTATGTTGTTGTATGAATGTAATCAAAATCATTTCAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU834002 lncRNA upstream 73742 64272706 ~ 64273009 (+) True G734443
TU833963 lncRNA upstream 101737 64244750 ~ 64245014 (+) True G734408
TU833689 lncRNA upstream 282560 64063988 ~ 64064191 (+) True G734148
TU833684 lncRNA upstream 291836 64054638 ~ 64054915 (+) True G734143
TU833681 lncRNA upstream 294099 64052331 ~ 64052652 (+) True G734140
TU834203 lncRNA downstream 148351 64498232 ~ 64500952 (+) False G734622
TU834202 lncRNA downstream 148413 64498294 ~ 64500952 (+) True G734622
TU834234 lncRNA downstream 152465 64502346 ~ 64502780 (+) True G734642
TU834218 lncRNA downstream 161677 64511558 ~ 64565673 (+) True G734627
TU834207 lncRNA downstream 196797 64546678 ~ 64551340 (+) True LOC110530334
XM_021613281.2 mRNA upstream 2731 64341284 ~ 64344020 (+) False LOC110530327
XM_021613280.2 mRNA upstream 2731 64341286 ~ 64344020 (+) True LOC110530327
XM_021613277.2 mRNA upstream 10206 64302481 ~ 64336545 (+) False LOC110530325
XM_021611266.2 mRNA downstream 1788 64351669 ~ 64358704 (+) True elovl8a
XM_021613289.2 mRNA downstream 83224 64433105 ~ 64498150 (+) False zswim5
XM_021613287.2 mRNA downstream 83225 64433106 ~ 64498150 (+) False zswim5
XM_021613288.2 mRNA downstream 83303 64433184 ~ 64498040 (+) True zswim5
XM_021613295.2 mRNA downstream 197799 64547680 ~ 64551206 (+) False LOC110530334
TU833063 other upstream 798008 63547587 ~ 63548743 (+) True G733571
TU832812 other upstream 919084 63375496 ~ 63427667 (+) True LOC110530316
TU832811 other upstream 961501 63375496 ~ 63385250 (+) False LOC110530316
TU832575 other upstream 1141855 63199500 ~ 63204896 (+) False LOC118965541
TU831769 other upstream 1463803 62797701 ~ 62882948 (+) True G732350
TU834206 other downstream 196399 64546280 ~ 64551140 (+) False LOC110530334
TU834286 other downstream 269159 64619040 ~ 64620007 (+) False G734690
TU834284 other downstream 269294 64619175 ~ 64620007 (+) True G734690
TU834343 other downstream 347432 64697313 ~ 64697869 (+) False LOC110530343
TU834687 other downstream 471734 64821615 ~ 64822045 (+) True G735047

Expression Profile