RNA id: XM_021613287.2


Basic Information

Item Value
RNA id XM_021613287.2
length 3689
RNA type mRNA
GC content 0.60
exon number 13
gene id zswim5
representative False

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 64433105 ~ 64498150 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

cctcctctccggTTGTGCAGTGTCTCATTTGTGCAATTCTGAAGCTGGTCGTCTGTTCTCAGTGTTTATCTGGACGTCATGGCGGAGGGACGTGGAGAGCTACCGCCTCAGCCGCCACTTCATCTATCTTTACCCCCGGCCAGCAAGCGACCGTGCTTGCGCCCGGCTCCTCGAGGGCCTGGTCCGGGGCCTGGTCCGGGTTTTCCGAACTCTCGGTTTCGCTGCCCGGAATCTCTGTTGGACTGTGCCGCGAAGGCTGTAGCGGAGAAATGGGCCTTTGAGAGGGTGGAGGAGCGCTTCGAGCGGATCCCAGAGCCCGTACAGCGCCGTATAGTCTACTGGTCCTTTCCGAGGAACGAAAGGGAAATATGTATGTATTCGTCGTTTCAGTGCCGCGTCGCAGGCGAAGAGGGTCCGGCGGTGGGCACAGTGGCTCCCGCTGGATCCGGGTCTGTCCCTGGAGGGGTTACCAATACGACGGCCGCCGCCGGGGCAGCTGGCACCGGAGATGGACTGCCTTTCCGCCGAGGCATACGACTTTTGGAGACTggttgtgtggaaaatgtcttACAAGTCGgttTCCACCTCAGTGGCACGGTCATGGAGCCCGCCTCCCAGTCGGAGCCTGAGGTCACCCACAAGGTGGCCATCAGCTTCGACCGCTGCAAGATCACCTCGGTCACCTGTGGCTGCGGCAACCGCGACATCTTCTACTGCGCCCATGTGGTGGCCCTGTCCCTGTACCGCATCAGGAAGCCAGAGCAGGTCAAGCTGCGGCTGCCCATCTCAGAGACCCTGTTCCAGATGAacagagaccagctacagaagcTGGTGCAGTACCTCATCACAGCCCACCACACAGAGGTGCTGCCCACCGCCCAGAAACTGGCCGACGAGATCCTCTCATCCAACTCTGAGATCAACCAGGTCCACGGGGCCCCGGACCCCACGGCAGGGGCCAGCATCGATGACGACAACTGCTGGCACCTGGACGAGGAGCAGGTCAGGGAGCAGGTCAAACTGTTCCTGTCCCAGGGAGGGTACTACGGCTCCGGGAAGCAGCTCAACTCCATGTTCGCCAAGGTGCGGGAGATGCTGCGGATGCGTGACTCTAACGGTGCCAGGATGTTGACCCTAATCACTGAACAATTCATGGCCGACCCTCGCCTCGCTCTGTGGCGGCAGCAGGGGACAGGCATGACGGACAAGTGCCGGCAGCTATGGGACGAATTGGGTGCCCTGTGGGTGTGCATCGTGCTGAACCCGCACTGTAAGAGCGAGGAGAAGAGCGGCTGGCTGAAGCAGCTGAAGAAGTGGGGCGACATGGACATCTGTCCCCTGGAGGACGGCAACTACGGCAGTGAGTTGCCCAACATTACCAACGCTCTACCACAGAGCAACCTCGCCCAGGACTCCCTGGCCCGGCCCAGACGGACCGTGTTCACGCGGGCCATGGAGGCCTGTGATCTCCACTGGCAGGACAGCCACCTGCAGAGGATCATCAGCTGTGACTACTACATGTCCCCAgcctaccagagagagggagagagtctgcTCTTCAACCCCCAGGGCCTGCCTCTATGGCTAGATCACGTCCCCACGGCATGCGCGCGGGTCGATGCCCTGCGTTCCCATGGTTACCCCCGCGAGGCACTGCGGTTGGGCGTGGCCATCATCAACACCCTCCGGCTGCAGCAGCACCGCCAGCTGGACATCTACAAGCACCAAAAGAAAGGTAGCGCCCCCTGTCTGCCTGGAGACAGTTCACTGTTCTCATTAGagctgctCCAGAAGGGGATGACCAGCACTACTAACCTCGAGGGCTGGGTGGGACACCCCCTGGATCCCATCGGCTGTCTGTTCACCACCCTCACTGAGACCTGCCGGGTAGAGGACGACAACGCAATGGACACTGGAGACTCTGGAGAGCCCAAGCCGCCTGTGTACCATCATGTGCCCGTGTGGGGTTGCCCGGATGGCGGGGAGTCCTACCTGGCACTGGCCCTGGAGGTGGCGCTGATGGGCATGGGGCAGCAGCGTGTGATGCCTGAAGGTCTCTATGCCCAGGACAAGGTGTGTCGGAACGAGGAGCAGATCGTGGCCAAGCTGCAGGAGATGGAGCTGGATGATCTGCTGGTCCAGACGCTGAGAAAACAGGCTATCCTCCTACTGGAAGgGGGTCCGTTCAGTGGCCTGGGTGAAGTCATCCACAGGGAAAGCGTTCCCATGCACACCTTTGCCAAGTACCTGTTCTCAGCCCTGCTTCCCCATGACACAGACCTGGCCTACAAACTAGCACTGCGGGCCATGAGGCTCCCTGTGTTAGAGTCGACTGGTCCCTCGGGAGACTTGGGTCACCCCCACCATGGCATCAGCATGGTGCCCAGCCGCTACCCGCGCTGGTTCACCCTAGGCCACCTGGAGTCTCAGCAGTGTGAGCTGGCCTCCACCATGCTCACCGCAGCCAAAGGAGATATGTTGAGATTGCGGACGGTGCTGGAGGCCATCCAGAAGAAcatccactcctcctccctcatcttcaAACTGGCCCAGGATGCTTTCAAGATCGCCACTCCGGCTGACAACCCCCCAGACATCACCCTGCTCAATGTAGCTCTGGAGCTGGGCCTGCAGgtaaTGAGGATGACTCTGTCTACTCTGAACTGGAGACGCAGGGAGATGGTGCGCTGGCTGGTCACCTGTGCCACAGAGGTGGGTCTACGAGCGCTGGTGAGCATCCTCCAGAGCTGGTACACCCTGTTCACCCCCACCGAGGCCACCAGCATCGTCGCAGCCACCGTCATGTCCCACAACACCATCCTGCGCCTCAGCCTGGACTATCCCCAGAGAGAGGAGTTGGCTAGCTGCGCCCGGACGCTGGCCCTGCAGTGTGCCATGAAGGACCCCCAGAACTGCGCCCTCTCGGCCCTCACGCTCTGCGAGAAGGACCACATCGCCTTCGAGACGGCCTACCAGATCGTCATCGACGCCGCCTCCACAGGCATGACGTACTCTCAGCTGTTCACCATCGCCCGCTACATGGAGCACCGCGGCTACCCACTCCGAGCCTTCAAGCTGGCCTCGCTGGCCATGACCCACCTCAACCTGGCTTACAACCAGGACACCCACCCGGCCATCAACGACGTGCTCTGGGCCTGCGCCCTGTCCCACTCGCTGGGCAAGAACGAGCTGGCCGCCATCATCCCCCTGGTGGTGAAGAGCGTGCACTGCGCCACCGTGCTCTCGGACATCCTGCGTCGCTGCACCATGACGGCCCCGGGCCTGGCCGGTATCCCCGGGCGACGGAACTCTGGGAAGCTCATGTCCACGGACAAGGCTCCGCTCCGGCAGCTGCTGGACGCCACTATCAGCGCCTACATCAACACAACCCACTCCCGGCTCACTCACATCAGCCCCAGACACTACGGAGAATTCATAGAGTTCCTCAGTAAGGCCAGAGAGACCTTCCTACTGGCCCAGGACGGACACATCCAGTTTGCCCAGTTTATAGACAACCTCAAACAGATCTACAAGGGCAAGAAGAAACTCATGATGTTGGTACGGGAACGCTTCGGCTGACCCCTGGGGTTCCCCCAACAGGACAGGCAATATGGGGAACACCTTTTTATTTCCAATTAATCATGTATTTAAGTTTTCATTTCCATTTATTTTGTCATTTACGTGTCAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU834002 lncRNA upstream 160097 64272706 ~ 64273009 (+) True G734443
TU833963 lncRNA upstream 188092 64244750 ~ 64245014 (+) True G734408
TU833689 lncRNA upstream 368915 64063988 ~ 64064191 (+) True G734148
TU833684 lncRNA upstream 378191 64054638 ~ 64054915 (+) True G734143
TU833681 lncRNA upstream 380454 64052331 ~ 64052652 (+) True G734140
TU834203 lncRNA downstream 82 64498232 ~ 64500952 (+) False G734622
TU834202 lncRNA downstream 144 64498294 ~ 64500952 (+) True G734622
TU834234 lncRNA downstream 4196 64502346 ~ 64502780 (+) True G734642
TU834218 lncRNA downstream 13408 64511558 ~ 64565673 (+) True G734627
TU834207 lncRNA downstream 48528 64546678 ~ 64551340 (+) True LOC110530334
XM_021611266.2 mRNA upstream 74402 64351669 ~ 64358704 (+) True elovl8a
XM_021613285.2 mRNA upstream 83225 64346751 ~ 64349881 (+) False selenop2
XM_021613286.2 mRNA upstream 83225 64346775 ~ 64349881 (+) True selenop2
XM_021613281.2 mRNA upstream 89086 64341284 ~ 64344020 (+) False LOC110530327
XM_021613295.2 mRNA downstream 49530 64547680 ~ 64551206 (+) False LOC110530334
XM_021613296.2 mRNA downstream 49530 64547680 ~ 64551206 (+) False LOC110530334
XM_021613298.2 mRNA downstream 49530 64547680 ~ 64551206 (+) False LOC110530334
XM_021613299.2 mRNA downstream 50698 64548848 ~ 64551206 (+) False LOC110530334
XR_005052931.1 mRNA downstream 99966 64598116 ~ 64599550 (+) False LOC118965544
TU833063 other upstream 884363 63547587 ~ 63548743 (+) True G733571
TU832812 other upstream 1005439 63375496 ~ 63427667 (+) True LOC110530316
TU832811 other upstream 1047856 63375496 ~ 63385250 (+) False LOC110530316
TU832575 other upstream 1228210 63199500 ~ 63204896 (+) False LOC118965541
TU831769 other upstream 1550158 62797701 ~ 62882948 (+) True G732350
TU834206 other downstream 48130 64546280 ~ 64551140 (+) False LOC110530334
TU834286 other downstream 120890 64619040 ~ 64620007 (+) False G734690
TU834284 other downstream 121025 64619175 ~ 64620007 (+) True G734690
TU834343 other downstream 199163 64697313 ~ 64697869 (+) False LOC110530343
TU834687 other downstream 323465 64821615 ~ 64822045 (+) True G735047

Expression Profile