RNA id: XM_021613295.2


Basic Information

Item Value
RNA id XM_021613295.2
length 1874
RNA type mRNA
GC content 0.42
exon number 8
gene id LOC110530334
representative False

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 64546280 ~ 64551340 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ACAAGTTGTTTTGCCTCGATGACATTCGTTCCTGCTTGTGTCACATGAATAAGGAACCGGTTGAACAAAGAAGAAAATAATCTGTCATTTTCCTGCTATCGACTTTCCAAAGGGATCAAACCAGTGCTAAAAAAAGTCTGGCCCTGGAATGATCTGTCCCCAGTATTATTTACGCTGGAAGAATAAAAGGCCTGCCCATTGGCAGATGGTGTCCTCATTCGACTTGGCTTCCTTTGGGAGAGGCTAACTGTGGCAGGCAGGCAGTATGTCAAATGGGAACGAGTCCTGCATGTTTGGTGATAGAGATGATTTTCTAGCCTGCCTCTGTCACACATTTGAGGAATGGTCAGGACTAGGACCACTGGAAGACTATCTGAGCTATCTGGAGTACCTGGCCTGGGTTTTCACCCCTCTGGTTGTCGTTTTCATCTTGCCCTTCCTCATTGTGATCTTCCTCTACCTTTCCATCCTCTTCCTCCATGTGTACAAACACAAGAACCAGCTCAGGGAGGCCTACTCCAACAACCTGTGGGATGGGGCTAGAAAAACGCTGGCAACGTTATGGGATGGCCACGGGTTCATCTGGCATGGATATGAAATCCATGGTATGGAGAAGATTCCCGATGAAGGAGCAGCTCTTATAGTCTATTATCATGGGGCTATTCCCATTGACTATTATTACTTTCTGGCAAAGGTCCTCATTCAAAAGGGACGGATTGTTCACTCAGTCGCTGATTACTTTCTGTTCAAAGTTCCAGGGTTCAAGCTGCTGTTGGAGGTGTTCAGTGTCATCCACGGGCCCCAGGAGGAGTGTGTGAAGGCCCTAAAAAGTGGCCACCTCCTGGGCATCTCACCTGGAGGCGTGAGGGAAGCCCTCCTCAGTGACGAGACCTATCCACTGGTCTGGGGGAAGAGAAAGGGCTTTGCACAAGTGGCTATCGATTCCAAAGTGCCAATAATTCCGATGTTTACTCAAAACGTCAGGGAAGGATTCCGATCTCTCGGAGGATTAAGCTTTTTCAGATGGTCGTATGAAAAGTTCCGCGTGCCGATGGCCCCTGTTTATGGGGGTTTTCCTGTGAAGTTTCGTACATACCTAGGCAACCCCATCCCATACGACCATAACATTAGTGCAGCAGAATTAGCTGAAAAGACACAGCAAGCAGTTCAAGCACTCATTGACAGACACCAAATAATTCCTGGGAATGTCCTTCGAGCATTACTAGAGCGATTCCACAGCAGGCGTAAAGACAAATAAATATCCTTTTGAATAGCCTTTTGTTAGTTAAATGAAGCAGTTACTTGTTTTTAAGACAAACTGTTAAGAGTATTATCAGGTGATCAACTGAATGTTTAACTGATTCCCGGTTTCTGTTATTTCACTATATTAGTACTTTTTACACTCAATTTGTCACAAACCAAGTACAGAAAATAAGGTAAATTGTAAAGGTGTCATAGCCTACAACTGTAATTATAATGGTTAATGTCAAATGTGCAAATTGAAGACATTTGTGCATTGTTGTATGATCCCACAATTGATTTGCACAAGTTGTTCAAAGTTCCACTGGCAACAATTTCAATTTAAGAGGCCTTTCTTTTGCTTAACAACTGCAAATATTGGAACAATATAGCAATTGATTTACATGGAACAATATAGGTATGGAGACTGGGCTGTTTAATTTTCTTTCATCTGTGTACAATGTTTGACTTTTGATTGAAATTATTATATAATTTCTTTATTTTGGGGATTTTGTACATTGTATTAtgtaggtatgtactgtaggctatgcaCTTTTAAAACCTATTGAGGTCATTGTCAGTGTGATTCAAGATGGAAATTATTTGTAATGTTACAATAAacatgttttaatgtg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU834234 lncRNA upstream 44900 64502346 ~ 64502780 (+) True G734642
TU834203 lncRNA upstream 46728 64498232 ~ 64500952 (+) False G734622
TU834202 lncRNA upstream 46728 64498294 ~ 64500952 (+) True G734622
TU834002 lncRNA upstream 274671 64272706 ~ 64273009 (+) True G734443
TU833963 lncRNA upstream 302666 64244750 ~ 64245014 (+) True G734408
TU834252 lncRNA downstream 19912 64571118 ~ 64571356 (+) True G734660
TU834256 lncRNA downstream 24489 64575695 ~ 64576076 (+) True G734664
TU834266 lncRNA downstream 38912 64590118 ~ 64590423 (+) True G734674
TU834271 lncRNA downstream 46881 64598087 ~ 64599487 (+) True LOC118965544
TU834274 lncRNA downstream 50345 64601551 ~ 64601856 (+) True G734681
XM_021613289.2 mRNA upstream 49530 64433105 ~ 64498150 (+) False zswim5
XM_021613287.2 mRNA upstream 49530 64433106 ~ 64498150 (+) False zswim5
XM_021613288.2 mRNA upstream 49640 64433184 ~ 64498040 (+) True zswim5
XM_021611266.2 mRNA upstream 188976 64351669 ~ 64358704 (+) True elovl8a
XM_021613285.2 mRNA upstream 197799 64346751 ~ 64349881 (+) False selenop2
XR_005052931.1 mRNA downstream 46910 64598116 ~ 64599550 (+) False LOC118965544
XM_021613305.2 mRNA downstream 89915 64641121 ~ 64644702 (+) True buc
XM_021613306.2 mRNA downstream 98352 64649558 ~ 64653404 (+) False LOC110530338
XM_021613308.2 mRNA downstream 98355 64649561 ~ 64653404 (+) False LOC110530338
XM_021613307.2 mRNA downstream 98364 64649570 ~ 64653472 (+) False LOC110530338
TU833063 other upstream 998937 63547587 ~ 63548743 (+) True G733571
TU832812 other upstream 1120013 63375496 ~ 63427667 (+) True LOC110530316
TU832811 other upstream 1162430 63375496 ~ 63385250 (+) False LOC110530316
TU832575 other upstream 1342784 63199500 ~ 63204896 (+) False LOC118965541
TU831769 other upstream 1664732 62797701 ~ 62882948 (+) True G732350
TU834286 other downstream 67834 64619040 ~ 64620007 (+) False G734690
TU834284 other downstream 67969 64619175 ~ 64620007 (+) True G734690
TU834343 other downstream 146107 64697313 ~ 64697869 (+) False LOC110530343
TU834687 other downstream 270409 64821615 ~ 64822045 (+) True G735047
TU834704 other downstream 279418 64830624 ~ 64830903 (+) True G735064

Expression Profile