RNA id: XM_021613309.2


Basic Information

Item Value
RNA id XM_021613309.2
length 2439
RNA type mRNA
GC content 0.50
exon number 6
gene id LOC110530338
representative True

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 64649558 ~ 64653472 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TTTCACTGACATTGATTGAATTCAGTTGAGTTATGGCAGCAACCCCGTTTGAAAATGGACCGCATGGTCGACATGCAAGGCGCCTTGGGCCACGCCAGCCAGTTCGTCAGCCTAACCCTGGTACACGGCACCCAGTGCATGGACCCCAAGGAGTAGGGCCATATCTGACCGAACATCCGCCCCATGTGCACCAGCCTCGACCCTACTTCTACGTGCATCCTGTgcagccccctcctcctcctcccgtctACCACTACCAGTGGCCCATGCCCTACAACCCATACTCTGGCTTTCCAGGGATGGGTTACGGTATGCCGGGTATGGTTATGCCACCGTTCCCTCCCCAACCATACATGGAGGCTCCAGGTTATATTCTTCCCCATGCCCAGCTGCACCCTGCTGAGTATAGACAATACCAGTTTCCTCCTGCTGCCATGGTCTACCAGAACCACAACAATAGGTTGAGAACATTTTACCAGAACACCACACCCAGAGAGACTGTCAACTCCGAAGTACAGACTGAACCACCACCTGAAGCGGAGAAAGACTATGCTCCCTCAGCTGCCCCTCTGGCTGGGTCAGATTCTGGAAGAGGCACCAACTCTACCCACTCCACCACCCCATCCTCGCCAAGCTCCAATGCAGAGAAACAGAGCTGCCCGGAAGTAGAACCTAATTCCCCCACAGACCCACCTGCAGCAACCAAGACCATCCACTCACGTAGGACCTCTATAGAGGCACTGGGGAAGCCTGTCCATGGTGGAGGTCACCTAGTGCATCATGATGTGTGGTCAGTTGGCTCTGCTGATGGCATGGTCCCCATGTGTAGCTCCTCTGACCAGGCGGATGAGGTTATCATGGCTGAGAGGTGTGCGTCCTCCTCCTTCCCAGATGTGTTGATCGGCGGAGGTTCGCCATCTTCCAAAATGGAGAGGGCACCCAAATGTGGTCAGATTCTTACCCAAGAAATTACACATGGGAATACCACAGAGGGCGCCAACGTCATAACAGGAAGCTGTGAAGGTGTTACGAACTTAAACAATTGCCACTACAAAATACTGAAGCTACCTTTTATCTTTCATGACTTGATGACTGAGTCAAAGGTGAATGAGTCTGTGTGGTCAGTGGAGTCAATGGCACCATACGTCCCTTCTACAGAGTGGCTGATACAAAATGGACTGATGGCGCCAGAAGATGTGGCACAGGAGTCGTCTGAGAAAGTTTCAGCTGATCAAAGCCAGATGTCCTTTCATTATAGGCAGGTACCGAAAAAGTTGAATGAGTCAGTATGGTCAGTGCAGTCATTGGCCCCATATGTCCCCTCCAAGGAATTGCTGATAGAGAACGTCCTTATGAATCCTGAGGTGGTGACTGAGAGAGAATCTGATCCTGCTAAGGTCAATCAAGGCCTCCGAGCCAGTCAGGTCATTGATataacagagagaaggagaagtcgGCGGTTTTCGCTGACTTTAGAAAATGTGAAAGAGGCTGAGAAAATGTCTGACGAGAATGCAACTCCATGCCAGGAGTCATTCCATTATAGGCAAATACAGAGAAATGATAAGGAGTTTGTTTGGTCAGTGGAGCCTGTGGAAAAAGCCAGTGTGGATGGTTTGCCTATTATGCTCTCAAGCAAAAGTACAATGATCCCAAGTCTTCAAGGATCATTGAATAGCACTCAAGGGTCACTGAAACCCAAGGTTCAATGTAGCCCAAATCTGAAGCCTCTGGAAGTTACAGAGCACAGGGCTCAGAGCCCCCTCTGCTCTCCAGATGACCCTGAAACATATGCCTCCAAATGTATGGCAGGAGACCAAGAGCCTGGTTACAGTTGTCCAGGTCCCTGCAACCAGGACATGGAGATTGAAGAGAAGGAGCCTTCCAAACAGACTGGGCCTGTTGTACCCAGTCGACAGGGCTGCAAGCAGATGATCGCAGATGTTAGGATGCTAACGGCTCCTTCCTTAAACAGACAGTTCAAGGTGTGTGGTCTGAAGTGTTCAAAGCTACAGGAGAGGAACTGCTCCTGTCATGAGCCGAAGCTAAACGTTGCGAGTTTCAGGAAGAGCCCCACAGGCAGACTGAATGAGGGAAATGTGGCCCCTGATCTCCCCAAGCCTCAGGAGCAGCAGTGTGGCATTCCACAGAATCAGAAACGACAGATGGATTCCAGGAAAGCAAACAAGGCCAGGCCTGGTCATGAATTTTGTGAAACTGGGTATGGCCCGAACAATAATAAAAAGAAACGGAGACCATGGCAAAATGGACCACAGGacagaacacaggcaCAGACTAACCCATCAAACTCCCTTGGACAGTGGAACACCCAGAGGAATGGCTACCAAGAACGCTGTAATGGGTATTATGGCAGATCTGGTAAAACAAGAGGAGCaaatggggaaaaaaacacaaggtactgactgaccagATTGAgga

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU834283 lncRNA upstream 32875 64616615 ~ 64616847 (+) True G734689
TU834278 lncRNA upstream 35396 64613811 ~ 64614326 (+) True G734685
TU834274 lncRNA upstream 47866 64601551 ~ 64601856 (+) True G734681
TU834271 lncRNA upstream 50235 64598087 ~ 64599487 (+) True LOC118965544
TU834266 lncRNA upstream 59299 64590118 ~ 64590423 (+) True G734674
TU834344 lncRNA downstream 44585 64697989 ~ 64698192 (+) True LOC110530343
TU834280 lncRNA downstream 58526 64711930 ~ 64712842 (+) True G734686
TU834385 lncRNA downstream 105109 64758513 ~ 64760663 (+) True G734781
TU834412 lncRNA downstream 144960 64798364 ~ 64798583 (+) True G734805
TU834686 lncRNA downstream 166891 64820295 ~ 64820583 (+) True G735046
XM_021613305.2 mRNA upstream 5020 64641121 ~ 64644702 (+) True buc
XR_005052931.1 mRNA upstream 50172 64598116 ~ 64599550 (+) False LOC118965544
XM_021613296.2 mRNA upstream 98516 64547680 ~ 64551206 (+) False LOC110530334
XM_036985972.1 mRNA downstream 13040 64666444 ~ 64667954 (+) False LOC110530342
XM_036985974.1 mRNA downstream 13054 64666458 ~ 64667954 (+) False LOC110530342
XM_036985971.1 mRNA downstream 13060 64666464 ~ 64667954 (+) False LOC110530342
XM_021613316.2 mRNA downstream 13065 64666469 ~ 64667954 (+) True LOC110530342
XM_021613317.2 mRNA downstream 43885 64697289 ~ 64698526 (+) False LOC110530343
TU834286 other upstream 29715 64619040 ~ 64620007 (+) False G734690
TU834284 other upstream 29715 64619175 ~ 64620007 (+) True G734690
TU834206 other upstream 98582 64546280 ~ 64551140 (+) False LOC110530334
TU833063 other upstream 1100979 63547587 ~ 63548743 (+) True G733571
TU832812 other upstream 1222055 63375496 ~ 63427667 (+) True LOC110530316
TU834343 other downstream 43909 64697313 ~ 64697869 (+) False LOC110530343
TU834687 other downstream 168211 64821615 ~ 64822045 (+) True G735047
TU834704 other downstream 177220 64830624 ~ 64830903 (+) True G735064
TU835130 other downstream 671531 65324935 ~ 65348497 (+) True si:ch211-207d6.2
TU835205 other downstream 748819 65402223 ~ 65403099 (+) True G735512

Expression Profile