RNA id: XM_021613317.2



Basic Information


Item Value
RNA id XM_021613317.2
length 1238
RNA type mRNA
GC content 0.51
exon number 1
gene id LOC110530343
representative False

Chromosome Information


Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 64697289 ~ 64698526 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


ATGAATGCCACGCACCAGCATCACCATGGATCATTTCACCTATGGAACCACAGCTCTGGAGCTCCGCCTCTAAGCCATCAACAGCACCAAGCCGGAGCGGAGAGACACCATGGTTCGTCTGGGTGTTACGAGCAGCTGCTAATCTCCACCGAGGTCTTCCTCACGCTGGGCATCGTCAGCCTGCTGGAGAACATCCTGGTCATCGCCGCCATCATTAAGAACAAGAATCTGCACTCTCCCATGTACTTCTTCATCTGTTCCCTGGCCATGGCCGACATGCTGGTCAGCGTCTCCAATGCCACCGAGACCATCGTTATGGCAATGATCACCGACGGAAATCTGGGGATTGGTGGCGGCGTGATCAAGAGCATGGACAACGTGTTTGACTCCATGATCTGTAGTTCCCTGCTGGCGTCTATCTGGAGCCTGCTGGCCATCGCCGTGGACCGTTACGTGACCATCTTCTACGCGCTGCGCTACCACAACATCATGACCACGCGCCGGGCCGCCGCCATCATCACCAGCATCTGGACCTTCTGCACCGTGTCGGGCGTCCTCTTCATCGTCTACTCGGAGAGCACTACCGTCCTCATCTGCCTCATCATCATGTTCTTCAGCATGCTGGTGCTCATGGCCTCGCTGTACGTCCACATGTTCATGCTGGCACGTCTGCACATGAAGAGGATCGCCGTTCTGCCGGGAAACGGTCCCATCTGGCAGGCAGCCAACATGAAGGGGGCCATCACCCTCACCATTCTCTTGGGGGTGTTCATAGTGTGCTGGGCTCCTTTcttcctccacctcatcctcATGATCTCCTGCCCTAGGAACCCCTACTGTGTGTGCTTCATGACCCACTTTAACATGTACCTCATCCTcatcatgtgtaactctgtcatTGACCCGCTGATCTACGCCTTCAGGAGCCAGGAGATGAGGAAAACCTTCAAGGAGATCTTCTGCTGTTGGTATGGTCTCgcctctgtgtgtttctctgtgtgaaATGCCCAGCAGATAGTGACTCTTATGGAGATACTGCATGTGAACTGTTTAGGGAGAATGTGAACAGTTTAAAAGAAACATAATTATATTATTTGTAAATAAGGACATATTTTTGTCTTGCCTCATGATCCAAATAAGAATTGCAAAATTGTTTAACATGCCTAAGGtaactacaggtaactgccaaaataatggaaacaccaacataaagtgtcttactAGGTCATTGATCCACC

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU834283 lncRNA upstream 80442 64616615 ~ 64616847 (+) True G734689
TU834278 lncRNA upstream 82963 64613811 ~ 64614326 (+) True G734685
TU834274 lncRNA upstream 95433 64601551 ~ 64601856 (+) True G734681
TU834271 lncRNA upstream 97802 64598087 ~ 64599487 (+) True LOC118965544
TU834266 lncRNA upstream 106866 64590118 ~ 64590423 (+) True G734674
TU834280 lncRNA downstream 13404 64711930 ~ 64712842 (+) True G734686
TU834385 lncRNA downstream 59987 64758513 ~ 64760663 (+) True G734781
TU834412 lncRNA downstream 99838 64798364 ~ 64798583 (+) True G734805
TU834686 lncRNA downstream 121769 64820295 ~ 64820583 (+) True G735046
TU834805 lncRNA downstream 192423 64890949 ~ 64891233 (+) True G735164
XM_036985972.1 mRNA upstream 29335 64666444 ~ 64667954 (+) False LOC110530342
XM_036985974.1 mRNA upstream 29335 64666458 ~ 64667954 (+) False LOC110530342
XM_036985971.1 mRNA upstream 29335 64666464 ~ 64667954 (+) False LOC110530342
XM_021613316.2 mRNA upstream 29335 64666469 ~ 64667954 (+) True LOC110530342
XM_021613307.2 mRNA upstream 43817 64649570 ~ 64653472 (+) False LOC110530338
XM_021613322.2 mRNA downstream 261658 64960184 ~ 64994487 (+) False cdh12a
XM_021613325.2 mRNA downstream 309361 65007887 ~ 65086822 (+) False cdh18a
XM_021613326.2 mRNA downstream 337475 65036001 ~ 65086822 (+) False cdh18a
XM_036985977.1 mRNA downstream 337480 65036006 ~ 65086822 (+) False cdh18a
XM_021613324.2 mRNA downstream 337482 65036008 ~ 65086822 (+) True cdh18a
TU834286 other upstream 77282 64619040 ~ 64620007 (+) False G734690
TU834284 other upstream 77282 64619175 ~ 64620007 (+) True G734690
TU834206 other upstream 146149 64546280 ~ 64551140 (+) False LOC110530334
TU833063 other upstream 1148546 63547587 ~ 63548743 (+) True G733571
TU832812 other upstream 1269622 63375496 ~ 63427667 (+) True LOC110530316
TU834687 other downstream 123089 64821615 ~ 64822045 (+) True G735047
TU834704 other downstream 132098 64830624 ~ 64830903 (+) True G735064
TU835130 other downstream 626409 65324935 ~ 65348497 (+) True si:ch211-207d6.2
TU835205 other downstream 703697 65402223 ~ 65403099 (+) True G735512
TU835317 other downstream 900859 65599385 ~ 65601897 (+) True LOC110530360

Expression Profile