RNA id: XM_021613322.2


Basic Information

Item Value
RNA id XM_021613322.2
length 2956
RNA type mRNA
GC content 0.50
exon number 12
gene id cdh12a
representative False

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 64960058 ~ 64994487 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

cagagagagtgggagagatagagacagagagaaaatgtgTTTGAAGGGCTGTAAGTCTGAGTGTGTTCTTCGCTCGCAAGGGAGTTTCATCGCTTTTACCATCAGATGTGTGGATTAATTTGGTCTAACCCCACCAGCCTGGGAGCCTGACGAGAGACAGTTAAGGAGACCTAGGTAATGAGGACTAGTTGAGTGAGATGCCAAACATCCTGGAGACCAATCTACCCATGTCACCACAACATCCTCCCGTCCCTTTCTTCATTGGATCTGCAACCCAGCTTCTATTGTCTCACTGACAGTCTCTCATTGGAATTCAACAGAGATACTCCACTGCCCAGATTGCCAATGATTACAAGGAACGGTCTGCTGTTGGTCTTTTGGTTTCTCTTGGACAAAGGTTTCCTGGCTCCCCTCCACGCTCCACCCCAAAGCAGGATGGGAAGAGAGCAACACCTGAGGGGTGTGGAAGGACTGGGACTGAGGAGACATGTGGCGTCAGGGGTtcagagggtgaagagaggatgGGTGTGGAACCAGTTCTTTGTACTGGAGGAATATATGGGATCGGAACCACAATATGTTGGAAAGCTTCACACTGACCTGGACAGGGGCGACAGCGACGTGAAGTACACTCTATCAGGAGAAGGAGTCGGAACCATCTTCACCATAGACCAGACGACAGGTGACATCCATGCCTTGATGGGTTTGGACCGAGAGGTGAAATCTTACTACACGTTACGAGCCCAGGCTGTGGACATGAACACAGGCAGGCCTCTGGAGCCTGAGTCTGAATTCATCATAAAAATTCAAGACGTCAATGACAATGAACCAAAGTTCTTGGACGGCCCATACACAGCCAGTGTCCCAGAGATGTCACCAGGGGGTACTTTTGTTATGCAGGTGACTGCCACAGATGCTGACGACCCCTCCTATGGGAATAGTGCACGGATcgtctacagtatcctacatgGACAGCCTTACTTTTCAGTCGACTCCAAAACTGGGGTTATTAGAACTGCGTTGCCTAACATGGACCGTGAAGTGAAGGAGCTTTACCAGGTCCTTATTCAGGCAAAGGATATGGGCGGTCAGCTGGGAGGACTAGCCGgaaccaccaccatcaacatcacCCTCAGCGACGTCAACGACAACCCACCCAGGTTTTCAAAAAGTATATTCCACCTCAGGATCCCAGAGTCTTCGTTAGTGGGCTCAGCAGTGGGGAAGATCAGAGCTCATGACCTGGACTCTGAGAAGAATGCAGAGGTGGAATATTCTATCGTTCCTGGAGATGAAGGACACGTGTTTAACATCACCTCCAACGGGCACAGTCAAGAGGGAATCATAGTCCTAAGTGAGCATCTCGACTACGAAACCAAAAGATCATACACCTTTAAAGTGGAGGCCTCCAACGCTCACCTGGATCCCCGGTTCCTGCACCGGGGCCCCTTCAAAGACACTGCCACCGTGAAGGTCAACGTGCTGGATGTGGATGAACCCCCTGTGTTCACTAAGACCTCTTACACCATAGATGTGTATGAGGACACTCCTGTGAGCACCATCATTGGATCTGTTACAGCGCAGGACCTAGATGCAAGTACCAGCTCAGTTAGATACTCTATTGAGTGGAAGAGGCCTGTGGACGGCTGCTTTGACATTGATACTGTGGAAGGGACCATCTCCACCACCGAGATGTTGGACAGAGAGAGTAATAGGCAGCACAATATCTTTGTTGTGGCCACTAAAGTTAACAACCCTCTCCTATCCAACAAGGTCACAGTCACAGTCAATGTGCTGGATGTCAACGAGTTCCCTCCGGAGCTCACCATTCTCTTTGACACGTTTGTCTGTGAAAATGCAAAAGTAGGCCAGGTAATTCAGACCATCAATGCTACGGACAAGGATCTTCCCACTGTTGGACAGAAGTTCTACTTCAAGTCCCCCAGGGAAATCAGAAACAGGAATTTCACTGTGCGAGACTTTGGAAACAACACAGCGGGGATAGTGACCAAGCGTGTGGGGTTCCAGAGGCGGGTCCAGGAGTACTACGTGGTGCCTGTGGTGGTGGAGGACAGTGGCTACCCAGCCCAGAGCAGCACCGGCACCCTCACTGTCCGCGTGTGTGCCTGTGAGACCGACGGTTCCCTCCTGTCCTGCACGGCAGAAGCAGTCTTTCTACCAGTGGGTCTCAGCACCGGGGCAGTGATGGCCATTTTACTGTGCATGGTCATACTCCTGGTGATCGTGGTGCTCTACGTAGGCCTGAGACGGCAGAAGAAGAGGGAGACATTGATGTCGTCCAAGGAGGACATCCGGGACAACGTGGTTCACTATGACGTCGAGGGGGGCGGCGAGGAGGACACTCACGCCTTCGACATGGGCACGCTGAGGAACACCAAGGCCATAAAGGAGAACATGCTCCGCCGGGGCACAGGGTCATGGTCAGATGTCACCACTCAAACTGAGATCAATGGGTCAACCCCTACCACAGAAGGCAGCACTAACATCATCAGGGACTATATTCACCAGCGTCTCCAGGAGAACCACCTGGGTTTCTCTGCTCCCCCGTATGACTCGCTGGCTACATACGCCTATGAGGGGGATGGGTCAGTGGCAGAGTCGCTGAGCTCCATCGAGTCGTGGACGGTGGACGGCTGTGAGGACTTCAGATACCTCAGCGAGTGGGGGCCATCCTTCAAAACTCTGGTGGGGATATTAGACAAAGACAAAGCAGATCCTCCCACTGCGGAAGTGGAGGAGAGTTGAGAGTACTTGTTAAGACAGAATTGACAGAAAATACTATTTGATTTGCAAAAGTTGTTTTACTTTTATAGTACTTTTATAGACAATGGGAATAAAATACAAGCCGTTCACTTAAGTTCTTATCATAGTTTTGTGgtggttgttattgttgtttgttttttggtTAAAATAAACTTGACAAGCTATCAAAGTG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU834874 lncRNA upstream 13128 64946856 ~ 64947056 (+) True G735230
TU834805 lncRNA upstream 68951 64890949 ~ 64891233 (+) True G735164
TU834686 lncRNA upstream 139601 64820295 ~ 64820583 (+) True G735046
TU834412 lncRNA upstream 161601 64798364 ~ 64798583 (+) True G734805
TU834385 lncRNA upstream 199521 64758513 ~ 64760663 (+) True G734781
TU834976 lncRNA downstream 63671 65058158 ~ 65130552 (+) False G735303
TU834978 lncRNA downstream 135483 65129970 ~ 65142590 (+) True G735303
TU835112 lncRNA downstream 275588 65270075 ~ 65275313 (+) True G735431
TU835190 lncRNA downstream 383282 65377769 ~ 65378118 (+) True G735498
TU835191 lncRNA downstream 395114 65389601 ~ 65390041 (+) True G735499
XM_021613317.2 mRNA upstream 261658 64697289 ~ 64698526 (+) False LOC110530343
XM_036985972.1 mRNA upstream 292230 64666444 ~ 64667954 (+) False LOC110530342
XM_036985974.1 mRNA upstream 292230 64666458 ~ 64667954 (+) False LOC110530342
XM_036985971.1 mRNA upstream 292230 64666464 ~ 64667954 (+) False LOC110530342
XM_021613316.2 mRNA upstream 292230 64666469 ~ 64667954 (+) True LOC110530342
XM_021613325.2 mRNA downstream 13400 65007887 ~ 65086822 (+) False cdh18a
XM_021613326.2 mRNA downstream 41514 65036001 ~ 65086822 (+) False cdh18a
XM_036985977.1 mRNA downstream 41519 65036006 ~ 65086822 (+) False cdh18a
XM_021613324.2 mRNA downstream 41521 65036008 ~ 65086822 (+) True cdh18a
XM_036985981.1 mRNA downstream 147728 65142215 ~ 65252175 (+) False dlgap1a
TU834704 other upstream 129281 64830624 ~ 64830903 (+) True G735064
TU834687 other upstream 138139 64821615 ~ 64822045 (+) True G735047
TU834343 other upstream 262315 64697313 ~ 64697869 (+) False LOC110530343
TU834286 other upstream 340177 64619040 ~ 64620007 (+) False G734690
TU834284 other upstream 340177 64619175 ~ 64620007 (+) True G734690
TU835130 other downstream 330448 65324935 ~ 65348497 (+) True si:ch211-207d6.2
TU835205 other downstream 407736 65402223 ~ 65403099 (+) True G735512
TU835317 other downstream 604898 65599385 ~ 65601897 (+) True LOC110530360
TU835372 other downstream 672379 65666866 ~ 65668095 (+) True LOC110530364
TU836376 other downstream 1129721 66124208 ~ 66125338 (+) True si:ch211-106n13.3

Expression Profile