RNA id: XM_021613324.2


Basic Information

Item Value
RNA id XM_021613324.2
length 3137
RNA type mRNA
GC content 0.52
exon number 12
gene id cdh18a
representative True

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 65007887 ~ 65086822 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CCACTCCAGAGCTGCAGCAGGCAAGTGAGGCAGCAACCTGGCGGATTGGGGAGATGACTCCACTGAGGTGGATTGGGAGCAGCAGTAGACAGATAGGGTAGAATCTGTTCACAGCTCACTGTTCACATACCTTATCATCTGTTTGGAGAAGAAAGGGGAAACAACACGGCAACCTGCTCAGACCAGACCACTCATGAAATCTCCTGAGGATCCTCTGAGCAAATGAACAACCAGCTCTTTTCCCCTCTGTCCAACATGGAAATTAACCTTGGTTCTAATCCCTAGTGGACAGACTGAAATACACCATGGACTTTAGGAGAAATCTCTGGACTGGTCTGATCTGCACCTAGTACTGTCTTACTGTCGAGACGCTGTTGTGGCCTCTTGGTACACTGTTTGCCAAGGTACAGTGGAGGACTTAGAGAAGCATACATTCTCTACCATGAGAATTCCTGCCACCACTGCCTGCCTCTGCCCTTTGCTGATCTGCCTGTGCTTTGTCCAGAGGAGTTATGGGACGTCCCAGCCCAGGTCCAACGTCAGAGCACCCAGGAACCAAACCAAACACCTAGAAGGAGAGAAGGACGTGCACCATCGGCCCAAGAGGGGCTGGATATGGAACCAGTTCTTCGTTTTAGAGGAACATATTGGACCAGAAATCCAGCATGTTGGAAAGCTGCACTCCAACTCAGACAAAGGAGATGGCTCAGTCAGATACCTGCTGTCTGGAGAGGAGGCTGGTACTATATTTGTCATCGATGAGGTCACAGGGGACATCCATGCCACCAAGAGCCTGGATCGGGAGAAGAAAGGCCAGTATGTCTTACATGCCCAGGCCATCGATCGTTACACCAACAGATCTCTAGAGCCAGAGTCTGAATTCATTATCAAGGTCCAGGATGTCAATGACAACGCGCCCAAGTTTCCAGATGGCCCGTTTGCTGCTGCTGTTCCCGAGATGGCCGACGTTGGCACATCAGTGTTTCAGGTCACAGCCACAGACGCAGACGACCCCACCTATGGGAACAGTGCCAAGATTGTTTATAGCATACTGCAGGGACAGCCTTACTTCTCTGTGGATCCTAAAACCGGGGTCATCAGGACAGCCCTATCCAACATGGACAGAGAGGCCAGGGAGCGCTACCCTGTGGTGGTCCAAGCCAAAGACATGGCTGGCTCGGTGGGTGGGTTGTCAGGCTCCACCACCATCAATGTCACTCTGACAGACGTCAACGACAATCCTCCCAAATTCCCCCAGAAAAACTACCAGCTGTACGTTCCAGAGTCTGCTCAGATTGGAAAAGCTGTGGGTAAAATCAAAGCAACCGATGAAGATTTGGGCGTCAATGCAGAGATGAGGTACAGCATAACCAATGCAGAAGGGAAAGCCATGTTCTCCATCACTACAGACACTGACCAGAAGGAAGGCATCATATCACTAAGACGGCAGCCTTTGAACTATGAGAAGAGGAAAGTCCACATGCTTCACATAGAGGGAGTGAACACTCACCTGGATTCCCGCTTCTCCCACCTGGGCCCCTTCAAAGACACCACCACTCTCCGGATCATCATCGGAGACGTGGACGAGCCGCCTGTCTTCTCCATGGACTATTACATCATGGACGTGTACGAAAACTCCCCTGTGGGAACAGAGGTCGGCACAGTGACGGCTCAGGACCCTGACAGTACCAAAAGCCCTATAAGGTATTTTGTAGACCACAGTGAAGAGGAGCAGGTGTATTTCACCATTAGTGTGAATAACGGGGTGATTAAGACCACCCGGAGTCTGgacagagaggatgtggcctggcACAACATCACTGTGATGGCATCAGAGGTTGACAATCCCAGTCACGTCAGCCATGTTCCTGTGACAATCCAGGTGCTGGATGTAAATGACAATGCTCCCTACATTGCAAGAGACGATGAAATCATTGTGTGTGAAAGCTCCAGGGCAGGACAGGTGATCCAGACAGTGAGGCCATCAGACATGGATAACTTTGCAAATGGACGCTTCTCCTTTGCTCTGCCAAGTGATCTCCCAGTCAATCCTAACTTCACCTTAAAGGCTAACGAAGACAACACTGCCAGCATCGTGGCACGGAGGCGTCAGTTCAGCCAGGCGGAGCAGGATCTCTACCAGCTTCCTGTGGTTGTCAGGGACGGGGGGGAGCCCGTCCTGAGCAGCACCTCCACCCTGACCCTCCGAGTGTGTGTCTGCCAGAGAGgaggtagcagcagtagcagcagtagcagcagcaacaggGTGAGGACCTGCCAAGTCCCGGCCTTCCTCTCCACAGCTGGCCTGAGCACCGGGGCCTTTATCGCAATTCTGCTTTGCATCATCATCCTGCTGGCCATCGTGGTGCTATTTGTCCTCCTGCGGAGCAAAAAGGGCAAGAAGGAGCCGTTGATCATCTCTGAGGAGGACATCCGGGAGAACGTGGTCACCTACGATGATGAGGGCGGTGGCGAGGAGGATACGGAGGCGTTTGACATTGCAGCGCTGCGGAACCCCGCCGGGGCAGAACAGAGGAGGCTGCGGCGGGAGGTAAGGtctggggaggaggggtggctGGTGGCCTGCGGGCCCCAGAGTCCGTCCCTTGTGCTGCTCGACACAGAGGACATGCACCACGTCATCAGACAGAGAGTAGTAGACGCTGACAAGGACACCAGCGGACCGCCCTATGACTCCCTCCAGACGTACGCGTATGAGGGCTGCGGCTCACCCACGGGGTCAGTCAGCTCTCTGGGGCTGGCCCAGGTCCTGCCCCCTGAACTCAGCTACAGGGACCTGGAGGACTGGGAGCCGGAGGGCCACATGCAGGCCAGACTGTTTGGGACAGAACTCTCTGAGACAGAACAGACCATAACCCCCTAATGTAAAACATCTCTCCTCTTCTAACCAGTTTAAGGTTAACCTAGCGATACAAAGCTATTTGAGTTGTACAACTTGTTCCTTTTTTGTGTGGAATTGACTGTCATTTAACACTGGTCTCTGTCAAGTGGAGTGGAGGAAACTATTTAAATATTTTTAGAAAAACAAATCATGAAGTTGGTATAAAAAAAAACGATTTCCCAAGTGTATATTTTTATTGATGAATAAAGTGCAGTGATTTCAGATAAGTGAA

Function

GO:

id name namespace
GO:0007156 homophilic cell adhesion via plasma membrane adhesion molecules biological_process
GO:0005886 plasma membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0005509 calcium ion binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU834887 lncRNA upstream 73407 64962299 ~ 64962601 (+) True G735243
TU834886 lncRNA upstream 73788 64961995 ~ 64962220 (+) True G735242
TU834855 lncRNA upstream 75657 64960058 ~ 64960351 (+) True cdh12a
TU834874 lncRNA upstream 88952 64946856 ~ 64947056 (+) True G735230
TU834805 lncRNA upstream 144775 64890949 ~ 64891233 (+) True G735164
TU834978 lncRNA downstream 43148 65129970 ~ 65142590 (+) True G735303
TU835112 lncRNA downstream 183253 65270075 ~ 65275313 (+) True G735431
TU835190 lncRNA downstream 290947 65377769 ~ 65378118 (+) True G735498
TU835191 lncRNA downstream 302779 65389601 ~ 65390041 (+) True G735499
TU835224 lncRNA downstream 341390 65428212 ~ 65433525 (+) True G735530
XM_021613322.2 mRNA upstream 41521 64960184 ~ 64994487 (+) False cdh12a
XM_021613317.2 mRNA upstream 337482 64697289 ~ 64698526 (+) False LOC110530343
XM_036985974.1 mRNA upstream 368054 64666458 ~ 64667954 (+) False LOC110530342
XM_036985981.1 mRNA downstream 55393 65142215 ~ 65252175 (+) False dlgap1a
XM_036985978.1 mRNA downstream 55393 65142215 ~ 65253973 (+) False dlgap1a
XM_036985979.1 mRNA downstream 55393 65142215 ~ 65253973 (+) False dlgap1a
XM_036985980.1 mRNA downstream 55393 65142215 ~ 65253973 (+) False dlgap1a
XM_036985982.1 mRNA downstream 55393 65142215 ~ 65253973 (+) True dlgap1a
TU834704 other upstream 205105 64830624 ~ 64830903 (+) True G735064
TU834687 other upstream 213963 64821615 ~ 64822045 (+) True G735047
TU834343 other upstream 338139 64697313 ~ 64697869 (+) False LOC110530343
TU834286 other upstream 416001 64619040 ~ 64620007 (+) False G734690
TU835130 other downstream 238113 65324935 ~ 65348497 (+) True si:ch211-207d6.2
TU835205 other downstream 315401 65402223 ~ 65403099 (+) True G735512
TU835317 other downstream 512563 65599385 ~ 65601897 (+) True LOC110530360
TU835372 other downstream 580044 65666866 ~ 65668095 (+) True LOC110530364
TU836376 other downstream 1037386 66124208 ~ 66125338 (+) True si:ch211-106n13.3

Expression Profile