RNA id: XM_036985978.1


Basic Information

Item Value
RNA id XM_036985978.1
length 5153
RNA type mRNA
GC content 0.51
exon number 12
gene id dlgap1a
representative False

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 65142215 ~ 65253973 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TCTGCGCTGCAGCAACagagcgagctgtcatgtgcatGGAACAGAGGCTCGTGCGGTTTGATACCCAGCTATACAGCCACCACCAGTCGCTCTTTCTTATTATTTCTCATAAAAAAATATCGTTTCATTTAGGATTTATCGAATGTCACTCCACTCATGAATTCTGACTTGAGAAGACTGAAGTGGACTGTATTGGTGTGAAGGCTAACACACAGGGATTCCAATGCCTTCCAGACAACAATCTAAGATGGGGAATTGAAGAGGCTCCTATCAGGAACATAATCTGCAGTGGTTCCCAGGTTGGCCCACTGTCTGTGGACTGAACAGACACCATGAAGGGTCTATCAAGCAGTCGCAGCCACCACCATTTGGTCACCTGTGACCCTGGTTCCTATGATGCCCTAGGCCATGGCCACCACCCTGACCGCAAGCCCTACCTGATCAACCAGATGGACATGCCCATGTCCCACCCCTCTGACCACGCCTACTACACCCAGGTCCAGAGCCAGCATAACCAGAAGAACCACACTGCCTTCCCCTCAGACAGTAGTGTGGTGCCCTATGGGACCTTCCCCAGACGACACTACAGCAGCTCCCACCACGAGCTGAAGGATCGGGTGGGGATGGATGAGTGTGCTGTGGTGCCCTATGGTGTGGGTGTTGGTGTGGGTAACATGCTTCCCAACAAGGGCGTCAACATCCGCCTGCCAGTCAACCTGCTGGACCAGTTTGAGAGGCAGCCGTCATTCACCCGGGACGGCTACCACACGCTGCAGTACAAGAGGACGGCACTGGAGCAGCGCAACGACAGCCCCGGACGCATCCGCCACCTGGTCCACTCCGTCCAGAAACTCTTCGCAAAGTCCCACTCCTTGGAGGGGCCAAACTCCAAGCAGGGAAGCATCAATGGCAGCAGGAACAGCCCCGAGAGCGAGACACCCCCCACGCAGAAGCACCGCAAACGTAGCAAGAGCAGGGAGCGCTGCAAGTCAGCTGAGCCCAAGCACAGGAGCCCCACCTCGGGGTACTGGAGCTCAGACGACATCCTGGATGACCGAGACGTCTGTCACAGCCTGTTGCACAGCCCCACTGGAGTCATGACCATGGGCCGCCACCCGGACAAGTCCCAGTCGCAGTACTTTATGGAGGCCTACAACACCATCAGTGAACACGCCCTGAAAACGTCGCGCAGTAATAACGACGTAGTAAAACACACCTGTGTCCCCTCCCATATCCCCATAAGCATGGACGCCCAGCTCATGAAGAAGAGCTTGTGGTCGTCCAGTCTAACGGTGAGCAGGGCTCGCCAAGTCTACCAGAAGGCCTCAGTAAATTTAGATCATAAAGCGCTAGTGAAATCTGAGGCTTGTCAGCAGGAGCGCTCATGCCAGTTCTTGCAGGTGCCACAGGACGAGTGGAGTGGCTTCTCGCCTCTGGGGGGTAAGGAGGATGACATCCCATGTCGACGCATGCGCAGCGGGAGCTACGTGAAGGCTATGGGCGAGGAAGAAGACAGCGAAGACTCGGAGGGAAGTCCAAAGCCATCGCCAAAGGTCCAGGCCCAAGGTCGACGGGCCAGCTATCTCAAAGCCACCCAGCCATCACTGACTGAAATGACTACCTTAAAGATCTCCAACGAACACTCTCCGAAGCTGCAGATCAGGAGCCACAGCTACCTGCGGGCGGTGAGTGAAGTTTCCATCAATAGGAGCCTGGACACCCTGGACCCCAAAGGGCTCCTGGACCCCAAAGCGCTGCTCTCCTCACCCCAATACCGCTCGCGAAACGAGAGTTACATGAGGGCTATGAGCACCATCAGCCAGGTGAGTGAGGTGGAGGTGAACGGGCAGATAGAGCAGGTGTGTGAGCAGGTGTACAGTGAGATGGAGTCGCAGGCCATGGATGCGTTGGACCTGCCCATGCCGAGCTGCTTCCGCATGCGTAGAAACAGCTACGTGAGGGCCATGGACCAGGGCTGCTCAGAGGATGACGGGATGTCCCTGCTGCCCTCCTCACCCCCcaggaccaccaccaccaccgtcaGGACCATCCAGAGCAGCACAGTGTCATCATGCATCACCACCTATAAGAAGACCCCTCCCCCGGTGCCGCCCCGCACCACCGTCTCCAAACCCTTCATCTCCATCACAGCCCAGAGCAGCACCGAGTCGGCCCAGGATGCCTTCATGGATGGCCATGGCCAGGGGAACAGGGACAGCCACCCCCGGGGAGACATGACCGTCCAGTCAGCCCTGTCCAACTCCACAGAGAGCATCGACAGCATGAAGGCCCTGACGGCAGCCATCGAAGCGGCCAACGCCCAGGTCCACGGCCCCGCCAGTCAGCATGTCTCAAACAGCACcataaccatcaccaccacctctgCCCTGGCCCAGATCACTGAGGACAGCAGGAAGGAGCAGGCCAGGAGGGCCAAGTGCCAGCTGTCCATCGGCATCCAGGTGGACGGGCCAGAAGAGGAAGCTTTGGAGATGGAGGACCAGTCCAAGTTCCAATCAATTGGTGTCCAGGTGGAGAACGAGAGgggATACCGGCGGCTCACCCGCTCCAACAGTGTAACAGCCGCAGTACAGGCTGACCTGGACATGCCTGACATGTTAGACAGCGCCCTGGACTCCCCAGAGACAGACCTGCCCTCCTCAGTCTCTGTGTCACGCCAGTACTCGCGCGACGCTGCCACCTCGCCAGCCTCCACCGTCAGCATCCAGGGCTCGGGGAACCACTACCACGCCTGTACCTCAGACGACTACGATGACGTGGGCTTCGACCCGTCCATCCTGCCCCCGCCCGATCCCTGGATCGACAGCTTAACCGAAGACCCCCTGGAGGGGGTCCAGAGGTCCGTGTGTCAGCGGGATGGGCGCTGGTTCCTCAAGCTGCTGCAGGCTGAGACAGACCGCATGGAGGGCTGGTGCAGACAGATGGAGCAGGATGAACAGGAGAACGAGCTGCCTGATGACGTTTTGGGGAAAATAAGGCTTGCTGTGGGAAGTGCTCAGCTCCTGATGTCACAGAAGTTCCAGCAGTTCCGGGAGCTTTGTGAGGAGAACCTGAAGCCCAACGCCCAACCGCGGCCCATCTCTCAGGACCTGGCTGGTTTCTGGGACATGCTCCAGCTGTCCATCGAGAACATCAGCCTGAAATTTGACGAGCTGCACCAGCTGAAGGCCAACAGCTGGAAGCACCTGGACCCCCCGGAGAGAAAGGAGAAACGGATCCCTCCTCCTGTGCCAAAGAAACCCCCAAAAGGTCAGCCTCCCCTGGCCCGAGATAGGTCCCTGGAGAGCTCCGAGAAGCAGAGGCTGGATGCACGAAAGCGCTTGATGGCTGCCAAGCGAGCTGCGTCGGTGCGGCAGAACTCAGCCACTGAGAGCGCAGACAGCATCGAGATCTATATCCCCGAGGCCCAAACCAGGCTATGAGCACCATGGCAAGCACATCttcaccactacacacacaccctggctcacacacacacacagattcacttACAGTACACCTCACACACCgcaagaacacaaacacacaggtaaacacacacaagcTTTTAAAAGTATGGTTCCTGtggacacaaacacagagacctaCTCCCACTGATAGGTAAGTGCAGGGTATTTGTAATATAATCACACTATTCTGTCCATAATGGGAAGAGAAATGCCACCGGTATAGTTGTTTCTCTTACATATTATTATCTGTCTCTCACAAATTTGATCCTGGTCTTGTTTCTATCTATGTAACATAGATCCTGGTCTTGTTTCTATCTATGTAACATAGATCCTCGCCTGAAGAGGACCGCTTCGTGATCCTTCTTTTAAAAAGTTGAGCACTTTTACCCACACCTGTGTAACATACACCATGATCTTGTGAAATGTATAGCATTCTTAATCAATGTAGACAGCTGTTGATATCCTAACAGAAAGCAAATAATAATTATCTTTGAGCATTTGGTTTCTTTAGCTCTTTGTACTTTCACCTAAGCATGGGCCAAACAGAATGCCTTGCTTCATGTCCCATTCAAACCTCTGAATCTTTTTTATTTGATTGTGACATGATTGGCAAACGAACAGGGTATATTATGCACAAGCAATATTAGTTTGAAATCAGATGAAGTAAATGTGTAAAACAAATGAACACTTTGATTTTGGAAACCCATCTGTGAAGATCAGAGTTGAGACAAAAACAATTTTCTGTAGCCAGTTCTGTTGGTTTGTTATGCTGAAGCTGTCTATTGTAAAGACATAGTTGCTTATTCTAGAGAAATATGTGTTTAAACGTTTTAGAAATTCTTGGTACAAGGACAACTAATCCTGCTTTCCCTTTTGTAAAGTCTGATGCGTGTCTAAAGTGGATTTATGACAGCTGAGGATATTTGCAATGATGAGCCACCCAATATGAAATACCCTAAAAACAGAGGGACACTAAGAATGCAAGTCGTTTTATTTCTTAACAATGTTTTTCCAGTAGCAAGTTCAGTGGTTTACTTTTATTAGTAAACTGTTTCTGGGTATATTAGTTCAATCCTAAGTGGGCCAGTGTAATGCTCCAGCAGGCTTAGCTCTGTGTTATTTCTCAGGAAGAGATGGAAATTCAGTCTGTCAAATCAGGGTCTCCTAgtgctggtggtgtgtgtgtgtgtgttattgacatgtgcgtgtgtttgtgcgtgcgtgcgtgcatgccagtatgtgggtgtgggtgtgcgtgtCGTTTTGTGTGCATCAGTGTTtagaggtgagtgtgtgtgtggttgtgggtCTCTTAAAGTGCTTCCTGATTTCCTCGGTTGACATGTTGGCCTTTCTTCAATACGGTCAAGTAGCCTCATGAACATTTTGTACATAGTCAAAACACCACTTGTACTTGAAAATAACCATTTGTGTGTTTGTACAGAAGTGATACATGAGGATGTTCCAGTAAGCATGCAGACACAATATTAGTATTATAAAATCTATACCTAATTCATCTGTTTATTTATCAAACTAATTATTTATTGatgatttcatttttttttttttttactgtttctGTTCAGTGGTCTGTCATGCTACTCTgatcttatgttgtattgtatagagAGTATATGTGCATACATATGATAAACACAGAATAAAATAATTATCAACTCTGTT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU834976 lncRNA upstream 11663 65058158 ~ 65130552 (+) False G735303
TU834887 lncRNA upstream 179614 64962299 ~ 64962601 (+) True G735243
TU834886 lncRNA upstream 179995 64961995 ~ 64962220 (+) True G735242
TU834855 lncRNA upstream 181864 64960058 ~ 64960351 (+) True cdh12a
TU834874 lncRNA upstream 195159 64946856 ~ 64947056 (+) True G735230
TU835112 lncRNA downstream 16102 65270075 ~ 65275313 (+) True G735431
TU835190 lncRNA downstream 123796 65377769 ~ 65378118 (+) True G735498
TU835191 lncRNA downstream 135628 65389601 ~ 65390041 (+) True G735499
TU835224 lncRNA downstream 174239 65428212 ~ 65433525 (+) True G735530
TU835231 lncRNA downstream 185125 65439098 ~ 65442283 (+) True G735537
XM_021613325.2 mRNA upstream 55393 65007887 ~ 65086822 (+) False cdh18a
XM_021613326.2 mRNA upstream 55393 65036001 ~ 65086822 (+) False cdh18a
XM_036985977.1 mRNA upstream 55393 65036006 ~ 65086822 (+) False cdh18a
XM_021613324.2 mRNA upstream 55393 65036008 ~ 65086822 (+) True cdh18a
XM_021613322.2 mRNA upstream 147728 64960184 ~ 64994487 (+) False cdh12a
XM_021611267.2 mRNA downstream 7663 65261636 ~ 65262921 (+) True LOC110529128
XM_021613334.2 mRNA downstream 47022 65300995 ~ 65384014 (+) False si:ch211-207d6.2
XM_021613332.2 mRNA downstream 47022 65300995 ~ 65386540 (+) False si:ch211-207d6.2
XM_021613336.2 mRNA downstream 47022 65300995 ~ 65386540 (+) False si:ch211-207d6.2
XM_036985985.1 mRNA downstream 47022 65300995 ~ 65386540 (+) False si:ch211-207d6.2
TU834704 other upstream 311312 64830624 ~ 64830903 (+) True G735064
TU834687 other upstream 320170 64821615 ~ 64822045 (+) True G735047
TU834343 other upstream 444346 64697313 ~ 64697869 (+) False LOC110530343
TU834286 other upstream 522208 64619040 ~ 64620007 (+) False G734690
TU835130 other downstream 70962 65324935 ~ 65348497 (+) True si:ch211-207d6.2
TU835205 other downstream 148250 65402223 ~ 65403099 (+) True G735512
TU835317 other downstream 345412 65599385 ~ 65601897 (+) True LOC110530360
TU835372 other downstream 412893 65666866 ~ 65668095 (+) True LOC110530364
TU836376 other downstream 870235 66124208 ~ 66125338 (+) True si:ch211-106n13.3

Expression Profile