RNA id: XM_021613348.2



Basic Information


Item Value
RNA id XM_021613348.2
length 1072
RNA type mRNA
GC content 0.44
exon number 3
gene id LOC110530360
representative False

Chromosome Information


Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 65599331 ~ 65602141 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


AATAAACCTCAAAGAAGAATCCTGTGCTTACCACTGCCACAGAAGAAGAAAGGGGCGGGGGTTAATAACAGTGCTGTTGTGCATGCTGTTAGCAAAGAAGCTACTAAAGTGGCTTAAATTTATGATTGTATAATGTTTCAGCATTACTTTGCACGTGGATTACGTACTGCTATTTCTCAAACGTTTAGTATACAATTTGTTGCCCTCCGAAATGGGAGGCCTGCTACTCACGCGTGTAGAAGGCTGCCAATGAAGACCGAAGGGTGTTTGTATCACGCTGCCAAAAGGTCGTTTCTCAATGATGCGGCTAAAAAGGTACAGCCAGCCTCTGTACTACGGATGGCCTGCTGCTTCTCTACATCTTCCACAAACCACTCTGAGGAGGGGACGCTCATCTATTCAGGGAACCTCGGCAATTCTGTCCGAGGTGTGAAGATGTTCTCTTACACCAGTAGCGGGGCCAGCCTGTGTATGATGCCCTACATTCTTTTGAAGACTGGCATCAGCGTTCAGAGTCTTGTCCTGAAGGGGGCCTTCTGTGGTGTCATTGGTTTTTTCACATTCCTGACTCCCATCCTCCTCCACATCATCACCAAAGGCTATGTGGTTCGCCTGTACCACAACCATGACACTGACACGTACACAGCTGTCACCTACAACATCCTTCTGATGGAGAAAAAGACTGTGTTCCGTCAGAGTGAGGTCAAGATACCGGGTGTCAGCAAAATGTTCACCACGTTCTATGCCGACAAGAAGTCAATGCTTGTGAATCCGATGCTGTTCCCACTTCCTCATGACTATAACCACCTCATGGGTTACGACCAGCCCTTTTCATTTGATACGGAAGACTTGAATGGTAAACCTAATAAGAGTTAACGGATTTCTACAGATAATGCCAATTGCAGTCTGAACTGTTGAATGgaacgtgtgtgtttgtacgccTTAGTTGTTAATGTAGGCTATAAATTATATGATATCAAAGAGAACCTTTGAGAGATGTTGGTTTCTTCCTTTCACTAGTAAGAGGTAATGTATAGACATGGAGTATATGAATAAAATGTGTTTAAACAAA

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU835271 lncRNA upstream 107182 65491852 ~ 65492149 (+) True G735573
TU835268 lncRNA upstream 112184 65486781 ~ 65487147 (+) True G735570
TU835267 lncRNA upstream 114024 65485020 ~ 65485307 (+) True G735569
TU835233 lncRNA upstream 151701 65447384 ~ 65447630 (+) True G735538
TU835231 lncRNA upstream 157048 65439098 ~ 65442283 (+) True G735537
TU835362 lncRNA downstream 42685 65644826 ~ 65645051 (+) True G735656
TU835387 lncRNA downstream 86565 65688706 ~ 65750913 (+) True G735678
TU835423 lncRNA downstream 145635 65747776 ~ 65775479 (+) True G735705
TU836283 lncRNA downstream 293048 65895189 ~ 65895623 (+) True G736463
TU836289 lncRNA downstream 294662 65896803 ~ 65897040 (+) True G736466
XM_021613347.2 mRNA upstream 11701 65561693 ~ 65587630 (+) True LOC110530359
XM_021613344.2 mRNA upstream 79188 65511463 ~ 65520143 (+) True LOC110530357
XM_021613339.2 mRNA upstream 177352 65416276 ~ 65421979 (+) True LOC110530354
XM_036985985.1 mRNA upstream 212791 65300995 ~ 65386540 (+) False si:ch211-207d6.2
XM_021613350.2 mRNA downstream 52298 65654439 ~ 65657897 (+) True pi15b
XM_036985992.1 mRNA downstream 57148 65659289 ~ 65670369 (+) False LOC110530364
XM_021613351.2 mRNA downstream 57150 65659291 ~ 65670369 (+) False LOC110530364
XM_036985994.1 mRNA downstream 74686 65676827 ~ 65680382 (+) False LOC110530365
XM_021613352.2 mRNA downstream 74952 65677093 ~ 65680382 (+) True LOC110530365
TU835205 other upstream 196232 65402223 ~ 65403099 (+) True G735512
TU835130 other upstream 250834 65324935 ~ 65348497 (+) True si:ch211-207d6.2
TU834704 other upstream 768428 64830624 ~ 64830903 (+) True G735064
TU834687 other upstream 777286 64821615 ~ 64822045 (+) True G735047
TU834343 other upstream 901462 64697313 ~ 64697869 (+) False LOC110530343
TU835372 other downstream 64725 65666866 ~ 65668095 (+) True LOC110530364
TU836376 other downstream 522067 66124208 ~ 66125338 (+) True si:ch211-106n13.3
TU837120 other downstream 1052521 66654662 ~ 66655753 (+) True G737194
TU837146 other downstream 1097545 66699686 ~ 66704085 (+) True kncn
TU837166 other downstream 1196432 66798573 ~ 66802080 (+) False G737234

Expression Profile