RNA id: XM_021613351.2


Basic Information

Item Value
RNA id XM_021613351.2
length 3910
RNA type mRNA
GC content 0.43
exon number 15
gene id LOC110530364
representative False

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 65659289 ~ 65670369 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TAAATCTAAATTTGGCATATAAACGCAGTGAGCGTTCATACTTGAATGATTATACAGGTACGCTCGAGATTCCTTGGTGGATGTACGATATCCGAACTTACTTACTTATTACGTATATTTAGGCTCCTATAGATTTCCTAAATCTTAGGATGTATAAAGAGTAGCTTTCATGTTCACCATTCTGCTTCAATACAACTTTTGGAGCTGGATGGACATTGTTTCCCGGGGATAGTTGACCAGATTGAACAAAACGTTTTGGTAAaagCCGACAGAATACAGATTTTGTATTGGAGTGAACCACCGAGGCTGGAGAGGCTGATCATCATCATGAAGGGTGTACCTCAGGACTGGCTGAGAGGGTTTGGGTTGCTATTCTTTGCCCAAACAGTACTTTCTATGGAGATCCCTAACTCTACTCACCTGGAGGCTATACTGGAGAAGTATATGAACAAAGATGATGAGTGGTGGGTGTccaaacagagagggaagagagccaTCACTGACGGTGATATGCACCTCATCCTCGATTTGCACAACAAGCTCAGAGGTCAAGTTTATCCTCAAGCTTCAAATATGGAGTATATGGTTTGGGATACGGAGCTGGAGAGGAGTGCTGAACACTGGGCACACACCTGCCTGTGGGAGCATGGACCACAACACATGCTAACCCAGATTGGACAGAACCTGGGTGCTCACTGGGGAAGAGACCGACCACCAACATTTCACGTCCAAGCCTGGTATGATGAAGTGAGAGACTACAGCTATCCCTATCCACAGGAATGTaacccacactgccctttcagaTGTTCTGGTCCCGTCTGCACTCACTACACACAGATGGTTTGGGCAACAAGCAGCCATATTGGATGCGCTATCAATGTGTGCTACAATATGAATGTGTGGGGCATGATTTGGACTAAAGCTGTGTACTTGGTTTGCAACTACTCACCGCCGGGAAACTGGTGGGGGCATGCCCCATACAAACATGGCACCCCGTGCTCTGCCTGTCCGCCCAGCTACGGTGGAGGCTGTAGGGACAATCTCTGCTACAAAGAGAACGGAGTACAGAGACGTCCTGCCCCTGAACTAGAAGAGACAAATTACATTGAGCCGGAGTCGCAGCCAGAACCGAGGGCCCAAGAACCTCGGGCGAGACCACTGCCCCCAACACCATCATCCAATGACAACGTGGAGAGGAATGAGGTGGTCAGCACAGTGCAAATGTGTCAACAGATGGACTGTGAGACCAAGCTGCGTGATCGTTGTAAAGGAACCACTTGTAATAGGTACGAGTGTCTTCCTGGATGCTTGTCTAGCCCAGGAAAAGTAATAGGGACTGGGTATTATGATATGCAATCAAGTGTTTGCGGAGCTGGTTTGCACGCTGGAATCATAGACGATGGCGGAGGCTGGCTGGACATTACAAGACAAGGAAGAAAATCACATTTCACAAAGTCGTACAAAAATGGTGTTCAGTCTGTTGCGATGAACAGGAGTGCAAATGCCTTCAACGTATTTACTGTACCAGTAAAAGCAGTCACATGTGAGACCACCGTTGCACGGTTTTGTCCCTACAAAAAACCTTCACGGCACTGTCCAAGGATGTATTGCCCCCGCAATTGTCTGCATGAGACTCGTGCCAGAGTCATTGGAACACAATGGTATTCAGATAAATCCAGTATATGTCGAGCAGCCATCCATGCTGGTGTCATTCAGAATGACTCAGGAGGCTACCTTGATGTGCAGCCCGTGGacaagaggagacagtacagCGGTAGCTATCAGAACGGAATCTCTTCAGAAAGCCTACAGAATCCCTCAGGTGGCAAAGCATTCAGAGTATTTGCAGTCATTTGAATCCACATTGCAAGGACACTGGCAATGAAAATGAGCACTTGTCATTTCACGGCCAGTAATTACACTGCTTATGGTTTCCTTCTCTTGCTAAGCTGCACCTCAGCTTCTCAAGGCTGTTCAATTCACTATGATCACAACATATACAAAGATACACTGTTCAAATGTAGATCTTTTAAGACTGTATATTGGATGTATATAACATGTTGTAAATAAGTTGAATGTCTAACAAATTGCAATCTCTCATAGATATTTGTATCAGAACAGAAAAATATGCAATGTGCATGCATGGTAAAGGTTTTAATTCTATGATATTTCAAATCTTGTATTGTTTTTACAAAATGTGTAAGTATTTTATACATTTTGATGATTGATGTTGATGTTATATTTCATGATACAAAATTGTATAGCCCTTATTCATAGATTTTTACAGTTCAAGCCTGGCTGGCCAGGAGTGCGTCAGAGAATTTCATAGCACGAACCACATGGTGAGACACCCAAAATATgcattatttatttacatttgtgAAGAAATCATTGTTATCAATGGTCAATTCTGGAAGGACAGTTGGGACTTTCATAGCATGTCTTTTAGCTGAACATACAGTATAGCAATTATTGTATGTTTCATGAAAACCTTATCAGCTCTCCATTGATTGCTACTGTTCATAATACAGTAGCTGTATGGTATGTAGTTTATAAAGCACTACCTCACGTTGTTAGAAAGGCACCATTAATGTACTGGAAACTACTGGTACCCTGTCTGGATGGCAGAAAGAGTACTGTCTTACTGTCCTAGATCTAACATGTGTTTGTCAGGTTCACAGGGCGTTACTGTGGGATAAAGGGCTAAATCCTGGTGTATTCAGTAGTAGCTTTTCATATTTCTAAACCCAATTATCTGGTTGAAACATTAATAATATTTTGTATATACATTATACAGCTATTACACATGTTCATCTATCCACAGAACTCAGGCACTCATATTCAACATTTCAAAAACAGAATTTGTAGAAAGCCCATATCCTTTCCAGGCAGGAGCAGTAAAGAATGAAAGCTGAGCAAGCCCTTATGTTAAACTACTCGGGCCCACTGGCTGTGCGCTAGGTAGAGCAGACAAAGAGTGACTTTGTGTGTGTTGATCTCGATCTCACTTCCCTGGATGCATTTCCCCCACGCCTGCCACAGATGTGGTCAACCCCAGCTGAAAGGTCTCTGTCAGTCACccgtacacacacataccctctGTGGGATGCTTTATGTAAGGGTTGAGATTCAAGTTCAGTATATTTTACTCAATAGTTTCGTCTGAAAGGAGTTTGCTTCGGATAACGCATTTTAACTAATGCTGTAACTTTTTTAAAGGGGCAAGATCATATCTAAGATAATGTACCCTATTCTCTAATTTTGTCAAAAGCTCTTGTTAGACTACGTATATAGTCAGTCAACATAAGAGATGGTTAAATATTAAAGCTGTAAGTGGGTCAGACTTACTTCAATATGGAATAGAAACAAGGGAATCCAAAAGGACAGACATGTTGACCTTTATCCATAAACTTTTATCCATTCTTTAGAAATAGATATTACATACTAGCTTCCATTGCTAGTGCAAAGCTATGGTTAATACATTGTATACACTGTACTGTAGTGGTGACCCATTATAACACACAACCCCCCCTATCACCACCATTCTGCTGAGTGACCGGGGGGCTGGACTGAGAGGAACTTTTCCAGGAAGAGGACCAGGGCTGATAGAGAGCTGCTGATGGCCTCATTGAGTTCCGCACCACTCTCCAGAGAGAAGAGGCATGCATCAGAACACTGTCAAAATTCACAGGGCAGTGTTGCAGAGGAGTCCACTGGCAAAGATGCCAACTGTTCACTGCTGCAGGAGTGTTATACAACATGAAAAGACCCCACCGTCACAGACCCGCACAAGGATATATACATCACCATCTCAGAGGTGCTGTTTGGTGAAATTAGATTAGTTTCCTTTCATTTGGACTGTAGCGACTGCTAATAGTATACCTGatactaaataaaataataatcaatc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU835362 lncRNA upstream 14240 65644826 ~ 65645051 (+) True G735656
TU835320 lncRNA upstream 59046 65575105 ~ 65600245 (+) True G735619
TU835271 lncRNA upstream 167142 65491852 ~ 65492149 (+) True G735573
TU835268 lncRNA upstream 172144 65486781 ~ 65487147 (+) True G735570
TU835267 lncRNA upstream 173984 65485020 ~ 65485307 (+) True G735569
TU835387 lncRNA downstream 18337 65688706 ~ 65750913 (+) True G735678
TU835423 lncRNA downstream 77407 65747776 ~ 65775479 (+) True G735705
TU836283 lncRNA downstream 224820 65895189 ~ 65895623 (+) True G736463
TU836289 lncRNA downstream 226434 65896803 ~ 65897040 (+) True G736466
TU836304 lncRNA downstream 239697 65910066 ~ 65911742 (+) True G736477
XM_021613350.2 mRNA upstream 1394 65654439 ~ 65657897 (+) True pi15b
XM_021613348.2 mRNA upstream 57150 65599331 ~ 65602141 (+) False LOC110530360
XM_021613347.2 mRNA upstream 71661 65561693 ~ 65587630 (+) True LOC110530359
XM_021613344.2 mRNA upstream 139148 65511463 ~ 65520143 (+) True LOC110530357
XM_021613339.2 mRNA upstream 237312 65416276 ~ 65421979 (+) True LOC110530354
XM_036985994.1 mRNA downstream 6458 65676827 ~ 65680382 (+) False LOC110530365
XM_021613352.2 mRNA downstream 6724 65677093 ~ 65680382 (+) True LOC110530365
XM_021613353.2 mRNA downstream 32894 65703263 ~ 65719986 (+) False LOC110530367
XM_021613354.2 mRNA downstream 32894 65703263 ~ 65719986 (+) False LOC110530367
XM_021613355.2 mRNA downstream 32894 65703263 ~ 65719986 (+) False LOC110530367
TU835317 other upstream 57394 65599385 ~ 65601897 (+) True LOC110530360
TU835205 other upstream 256192 65402223 ~ 65403099 (+) True G735512
TU835130 other upstream 310794 65324935 ~ 65348497 (+) True si:ch211-207d6.2
TU834704 other upstream 828388 64830624 ~ 64830903 (+) True G735064
TU834687 other upstream 837246 64821615 ~ 64822045 (+) True G735047
TU836376 other downstream 453839 66124208 ~ 66125338 (+) True si:ch211-106n13.3
TU837120 other downstream 984293 66654662 ~ 66655753 (+) True G737194
TU837146 other downstream 1029317 66699686 ~ 66704085 (+) True kncn
TU837166 other downstream 1128204 66798573 ~ 66802080 (+) False G737234
TU837167 other downstream 1128204 66798573 ~ 66801060 (+) True G737234

Expression Profile