RNA id: XM_021613379.2


Basic Information

Item Value
RNA id XM_021613379.2
length 4109
RNA type mRNA
GC content 0.50
exon number 30
gene id si:ch211-106n13.3
representative False

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 66100360 ~ 66125932 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TTACAGCCTGTCATCTTGTACAGCAGGGAGTAAGTAGCCTGTTTCAGTAAATCTAGACGCGCTGTGTTACTGCAGGACTGTTTGCATTTACATTGATGACTGGTATATTGGCAGCTGATGAGTAAAGAGTGAAGGAGAACTTTGCAGTACTGTTGATCAACAATGAAGAAATGGATATTAGGATCCGTATTAACATGGATGTTCCTTCCACATCTGAGGGGAGATAATTTAGTGGAAGATGTTGACGTTCAAGCGGgctgtagcaCAGCATCAAACGACCTGGTTTACATAATCGACGGTTCCTCCAGCGTGGGCACTccagactttgacttggccaaacGATGGCTGGTCAATATCACCAGAGGCTTTGACGTGAGCTCCCGTCACACCCAGGTGGGCGTGGTCCAGTACAGCGACACGCCCCGTCTGGAGATTCCGCTGGGCAAACACCTGAGCAGCCAGGAACTGGTCAGCGCCATCAACACCATTGGGTACCTGGGGGGCAACACCCAGACGGGCAGGGCCATCAAATTTGCCACGCAGCACGTCTTCCCGTCCTCCAACCGCACACAGCCTGCCAGGAACCGCATTGCTGTGGTGCTGACAGATGGCCGTAGCCAGGACGACGTGGTGGACGCGGCCGTGGAAGCCAAGGCCCAGAATATTATCCTGTTCGCTGTGGGCGTGGGCAACGAGATCACCAACTCCGAGCTGGTGTCCATGGCCAACAATCCCCCCTCTACATATGTTCTCTACGCTGAGGACTACAGCTCTATCGCTAACATCCGAGACGCCATGGAGCAGAAGCTGTGTGAGGagtCTGTGTGCCCAATGCAGATCCCTGGAACAGCCAATGTAAAGGGATTTGAGCTGCTGTCCAGAATGCAGATCGACATGAAAGCAAAGAAAGTCCAGGGCTCGCTGATGTCAGAGACTTCCTACTTGCTTAGCCCCCGACTGGACCTCACCGACAGCACCAGGGCCATCTTCCCTGAGGGTCTGCCTCCCTCCTATGTGTTTGTGGCCACTCTACGCCTGAAGAGCCCCACCAACCATTTGAAGTTGGACCTGATCAGAGTGCTCTCTCAGGATGGGCTGAAACAGTTCGCTGTGACCCTCAATGGACTGGACAAGTCAGTCATCTTCACCAGCACAACCACCAGTGTCAACAAGAAAGAACAGTGTGTCATTTTCAATGACAGAGGAATTAAGAGACTCTTTGACTCAGAGTGGCACCAGTTGAAGCTGCTTGTTAAACCCAGACGTATCATCTGTTACCTGGACGACATGCAGATAGAGGAGCAGCTACTAGAACCTGTATTTCCCATCTACATCAAAGGAAAGATACAGGTCGCCAAGAAGGTCAAGATGGAAGCAACTGTTCCTATTGAGATACAAAAACTGAGGCTTTACTGCGATCCAGAGCAAAGTGAGAAAGAGACAGCGTGTGAAATATACTCTGTGGAGGATGACAGGTGTCCTCTGGAAAGACAACCTGCAGCAGTGGAGAGCTGTAACTGCCCTCAGGGGAAACCTGGGCCTCCTGGTCTTCCTGGGCCTATGGGCTTCCGAggtgagaaagggagggaggggccaCCTGGTCCTGACGGTAAGCCTGGGAAGCCAGGTGAACGTGGAATGGCAGGAGAACTCGGGAAGAATGGGAACAATGGCAAAGCGGGCATACCAGGGCATAAGGGCGAAGCAGGACTCAATGGGGCCAAAGGTGACAAGGGAGCACCAGGCCTTGAAGGCAGACCTGGCCCTCCAGGACCTACAGGACCAGAGAGACAACTTAAATTGGAGGCCACAGGAATTCCAGGAGAAAAGGGAAGTCCAGGTGAAGCAGGAGCTCAGGGACCACCAGGGGAGCATGGACCACATGGGGACACAGGGCCAGTAGGAAAGGATGGTTTTGTTGGACCAGCTGGAGTGAAGGGTGAGAAAGGAGACGTTGGGGTTCATGGTGGTGATGGACAGATTGGAGTTCTGGGAATCCGAGGCCTTCCTGGGCAGATGGGGCCTGCTGGACCTCGGggggagagaggcccACCCGGACAAGAGGGGCTGGTTGGACCAAAAGGACAAGAGGGTCTTCAGGGTCCGGTTGGTCCACCTGGAACTTACGGACTTGAAGGTTCAAAGGGGGCCCAAGGTGCACGTGGATCAGAAGGACATCCTGGGACACCTGGACTGAATGGACTGGAGGGAGAGCAGGGGGTTCAAGGGTTACCTGGTGACCGAGGACTGCCAGGGTTCAAAGGTCACAAGGGGGAAACTGGTGAACCTGGTCCCAAAGGAAGCCAGGGTGAGAGAGGTAACAATGGAGTTCCTGGGAACACTGGGGCAAACGGAGAAACTGGACTCAAAGGAAGCAAAGGAGAGAAAGGCCAATCAGGAGATACTGGAGCCAGAGGGgcggaggggaggaagggggaagtGGGTCTGATGGGAGCTGCTGGAGCTCGCGGCTCTCCTGGACAAGATGGGTTACCAGGGCAACCAGGAGAGCTGGGATACCCAGGCAAACCTGGGAAGCCACCAACTGATGACCACTTGATGAAGCTTTGCGCTAATGTTCTTCGGAATCAGCTGCCGCAGCTCCTGGCAATGATGGCACCAAAAAGTCAATGTGGGCAGTGTGAGACAGTGAAGGGGCCACCTGGTGAGCCAGGCCCGGCCGGCCCCAAGGGCCCCAGTGGAACGCCAGGGTACCCTGGCACGCTCGGTTTACCGGGTTACCCAGGACAGCCAGGCCGGATGGGGCCTCATGGGCACAAAGGTGATATTGGACCAATGGGGTTAAAGGGGTCCAAAGGAGATGGAGACACAGGGTTGACAGGTCCTCCCGGCCCAGCAGGTCTCCAGGGGCCCAGAGGCAGTGACGGACACGGTGTCTCAGGGCCTCCAGGTGAACCAGGGAAGTCAGGAATCCCCGGCATCCCAGGGAAGCGTGGCCCTCCTGGGGCCAATGGCGTATGTGACCCCACCTCCTGCTACCAGGCTATTTTCAGAGAGGAACGCTACAGCAAAGGACCCAACTTCTAGGCCTCACAAGGAAAGCAGGACATTTTAATTTGACATTTTGAGACTAACTAAGTCAAAGACTGCTCACTGAAAAATCAAGGGCTGCTGGAGTGAGTGAGTTAACCCTTTGTTTCATGTGGGATGATCCACTCAAACTTGAGATAAAGAAACAGAGGATATAGGGCAACAAAGTGACGCAAATTGGTATCCAGCCAAACAGGGTTGTTTGACACTGTCTTCAGGCCAGGGGTAATTCAGTGAACAGGCAGAAGTGATGAGGACAAGTGGGGATTAGGGATATTATTACCCCATCACTGGCTCATAATATCCGAGTGACAATGTTGTTTTTACTGTCTATCAGTGTCGAGGAGGTATAGAAACTTACAATGAGAATTGCACTGCCTTAGTTAAACTACCTCTTTGTTGGATCCAAAGCATTAAACATGATCTGGAGTGACAGGTAGCAATTGTGAAAAAGTTTTCTCCCAAATGATTTACTGTATGTTCAAGAGCAACACTAGGAACATACGACTCTGCATCAGAAGTCTTTCACTTTAAAACTACTAGCTCTTCACTACAAAGTACTATATTTTTTATATGTAGAAATTACTTTTATAAGTAATTTATTTTCCTTTTCAATCAAGCTTGTCAGTCATTAATTTGCTTCACTTCTACGGGTATAAACATATTTATTGTCCTAGTCATCATAGATATGCTTATTGTTACACAACTTCTGCATTTTCCTCTCAGTGTTCAGTGAACCTCCTGCTGGATGGAAACAAGCATGTTTACTGCCAGTATGCGTCGTCTGTCTGTAGTAACCATGAACAGTTTTTCCTGATTTAACTTCCATCCTTCTTATTATTATTCTTTcccaaaatatgttttaataTATCAAATGGGCTATTTTGATACAGTTTGTAGTATACTTTTCAAATATTGTTGGCCTGTTACAATTGACTTTCTTATTTTGATTTCCACATTTTCAAAACAAATGAATACATTTCTCCTTGTATTTTCTTATCAGAGAAAACACTGTTGACTGTGAAGTCTTTTTTGAATAAACTTCTGTTGTAGTCTTG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU836411 lncRNA upstream 685 66099467 ~ 66099675 (+) True G736575
TU836408 lncRNA upstream 2447 66097685 ~ 66097913 (+) True G736572
TU836396 lncRNA upstream 26827 66073325 ~ 66073533 (+) True G736562
TU836379 lncRNA upstream 35622 66064540 ~ 66064738 (+) True LOC110530377
TU836321 lncRNA upstream 180222 65918793 ~ 65920138 (+) False LOC110530371
TU836444 lncRNA downstream 35306 66161238 ~ 66161448 (+) True G736606
TU836446 lncRNA downstream 40355 66166287 ~ 66166568 (+) True G736608
TU836463 lncRNA downstream 93433 66219365 ~ 66219569 (+) True G736625
TU836465 lncRNA downstream 95303 66221235 ~ 66221687 (+) True G736627
TU836504 lncRNA downstream 143546 66269478 ~ 66272373 (+) False G736659
XM_036985999.1 mRNA upstream 27561 66066012 ~ 66072799 (+) True exoc3
XM_021613376.2 mRNA upstream 35611 66042234 ~ 66064749 (+) False LOC110530377
XM_021613373.2 mRNA upstream 59641 66035055 ~ 66040719 (+) False mcm6l
XM_036985998.1 mRNA upstream 59641 66035055 ~ 66040719 (+) True mcm6l
XM_021613371.2 mRNA upstream 73152 66010751 ~ 66027208 (+) False LOC110530372
XM_021613380.2 mRNA downstream 81 66126013 ~ 66128501 (+) True LOC110530382
XR_005052934.1 mRNA downstream 5170 66131102 ~ 66196125 (+) False LOC110530963
XM_036986005.1 mRNA downstream 5181 66131113 ~ 66199626 (+) True LOC110530963
XR_002474518.2 mRNA downstream 13802 66139734 ~ 66141456 (+) True LOC110530386
XM_021613381.2 mRNA downstream 84071 66210003 ~ 66218844 (+) False blvra
TU835372 other upstream 432265 65666866 ~ 65668095 (+) True LOC110530364
TU835317 other upstream 498463 65599385 ~ 65601897 (+) True LOC110530360
TU835205 other upstream 697261 65402223 ~ 65403099 (+) True G735512
TU835130 other upstream 751863 65324935 ~ 65348497 (+) True si:ch211-207d6.2
TU834704 other upstream 1269457 64830624 ~ 64830903 (+) True G735064
TU837120 other downstream 528730 66654662 ~ 66655753 (+) True G737194
TU837146 other downstream 573754 66699686 ~ 66704085 (+) True kncn
TU837166 other downstream 672641 66798573 ~ 66802080 (+) False G737234
TU837167 other downstream 672641 66798573 ~ 66801060 (+) True G737234
TU837788 other downstream 1044535 67170467 ~ 67215629 (+) True G737783

Expression Profile