RNA id: XM_021613402.2


Basic Information

Item Value
RNA id XM_021613402.2
length 5320
RNA type mRNA
GC content 0.52
exon number 16
gene id LOC110530392
representative False

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 66437381 ~ 66509379 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CAAATATACTACTTGTTTGGGTAATGTATAAATACAATCGTCGGAGTGTCTGCTTTAGAAAGTGATTAAAAAAGTAGTTGACACGTCACGTCGCAGGACTTGGTGGTGGCTGTGACATGTTTTCAGCTACTTTGGGATTTTTATAGGGGCCACATAGGCTACAGCGGTGCAGAGTGCGAGATCTAGACAAGAGCCTGCGGTCCAACTTTCCAAACCGAGGGAAATACCGCCCAAAAGATGCCTGTTCGGCGGGGACACGTGGCTCCTCAGAACACTTTTCTGGATACAATCATCCGAAAATTCGAAGGACAGAATCGCAAGTTCATCATCGCCAATGCTCGCGTGGAGAACTGCGCCATCATCTTCTGTAACGACGCCTTCTGTGGCATGTGCGGCTACACGCGCGCTGAGGTCATGCAGAAGCCGTGCACCTGCAGCTTCCTGTATGGGCCGCACACCAAGAGGCCTGCCGTGGCCCAAATGGCCAAGGCTCTGCTGGGCTCCGAGGAGAGGAAAGTGGAGATCTCCCTCTACGCCAAAGATGgTATGTGTTTCTCCTGTAAAATTGATGTGGTGCCAGTGAAGAATGAGGATGGCTTGGTGATCATGTTCATCCTCAACTTTGAGCTGCCCACTGATCCGCCTATTCCCAGCTCCCCGACCAGAGAGCTCAACAAGCTGCCCATCCCCTGGCTTCCCCTAGCACGTCGGCATAGGTTCCGTCTGCCCTCCGCCCTGCTCCGCTCCCTCAGCAGCAGTAAACATTCCCTGGAGGATGACACCGAGCTGGGCCACCAGCGCGACTTCTCTGCCCTGGGGCATGAGTCTGTAGCCCTGGACAAGCTGTTGTCCCTGCCAGAGCGCCGGCGGCTGGGGGGCACCGGGGTACTACTCTGGGACGAAGACCAGAGGGCCTTGCTGGGAGGTGACCCTGTCTCTCCCACCGGGGACCCCTCGGATGCCCCTCAAGCCCTGTCCCTGGCCATGGGCTTCTCCCAGTCCTCCCCCAGGCTGCACTGCCTCTGGGTGGACGAGGAGTGTGGCTCCAACTGCAGCGTGATGCCCAGCCGCTCCTATGAGAGCCTCTGCAGCCCGCTGCACGCCTCATCTGTGGACGGCATCAAGACTCGCAGGGGACGGTCCAGCTGGCACGGGAAGCTCCAGACGCGGCCCAGCAGCACAGGCGGAATGAAGTCCAGTCTGCATAATGTTACATCTGACTCCACGTCTGACCCCAACCTCATCCGCTTCCGGACCTTAAGTCACGTGACCCAGCTCAACCCACTGGACAACAGGCCAGACCCCCTGGTGGCCCTCCCATCTGCGGAGATTGACATCATCGCCCCCTGTAAACTAATGGACCGCACACACGGGGTCACTGAGAAAGTCACTCAGgTCCTCTCACTAGGCCCAGATGTCCTACCAGAGTACAAGCTCCAGACCCCCCGTATCCATAAATGGACCATCCTGCACTACAGCCCCTTCAAGGCAGTGTGGGACTGGGTCATCCTGCTCCTGGTCATCTACACAGCCATCTTCACACCCTACTCCGCGGCCTTTCTCCTCAGTGACCAGGAGGAGGCAGCCATGCAGACCTGTGGTTACTGCTCTCCACTGAACGTGGTGGACCTCATCGTGGACATCATGTTCATCGTTGACATCGTCATCAACTTCAGGACGACATACGTAAACACCAACGACGAGGTGGTCAGCCAGTCGCAGCGGATTGCCGTGCACTACTTCAAAGGCTGGTTCCTCATAGACATGGTGGCGGCTATCCCCTTTGACCTGCTCATATACCGCTctggagaagagACAACAACCCTGATTGGCCTGTTAAAGACTGCTCGGCTACTGCGATTGGTGCGTGTAGCTCGGAAGCTGGACAGATACTCTGAGTACGGAGCGGCCGTCCTCTTTCTACTCATGTGCACCTTTGCCCTCATCGCTCATTGGCTGGCCTGCATCTGGTACGCAATTGGTAACGTGGAGCGTGCAGGAGCGGCCCGGATTGGCTGGTTGGACTCTCTGGGGGACCAGCTTGGAAAGCCCTACAATCAGACTGTACCAGGGTCAGGTCCCTCCATCAGGGACAAATATGTCACAGCACTCTACTTTACCTTTAGTAGTCTGACCAGCGTGGGCTTCGGGAACATCTCCCCTAATACCAACTCTGAGAAGATCTTCTCTATCTGTGTAATGCTCATCGGCTCTCTCATGTATGCTAGCATTTTTGGTAATGTGTCAGCCATCATCCAGCGGCTGTACTCCGGCACGGCTCGCTACCACACCCAGATGCTGCGGGTTCGAGAGTTCATCCGCTTCCACCAGATCCCCAACCCACTGAGGCAGCGGCTGGAGGAGTACTTCCAACATGCCTGGTCCTACACTAACGGCATTGATATGAATGCTGTGCTGAAGGGCTTCCCAGAGTGCTTACAGGCTGATATCTGCCTGCACCTCAACCGCACCCTGCTGCAGAACTGTAAGGCCTTCAAAGGCTCCACTAAGGGCTGCCTGCGGGCCCTGGCCATGAGGTTTAAGACCACCCATGCCCCGCCAGGCGACACCCTGGTCCATGCCGGTGACGTCATCTCAGCCCTCTACTTCATTTCCCGTGGCTCCATAGAGATCCTGAGAGGGGATGTGGTGGTGGCCATCCTGGGTAAGAATGACATCTTTGGAGAGCCCATTAACCTGTATGCCTGTCCAGGGAAGTGCAATGCAGACGTGAGGGCTCTGACCTACTGTGACCTCCATAAGATCCACAGGGAGGACATGCTGGAGGTGCTAGATATGTATCCCGAGTTCTCTGACTACTTCTGGGGGAACCTGGAGATCACGTTTAACCTCCGGGATGTTGCCACGGTAGCTGGTTCAATGAGCAGTGAGGACTCTGATCATTGTGGAGTCAGCTGTCGTATTCACAGAACAAAACTGTCCCTCAGTTGCAGCTCGGACAGAGAGGCAGAGGAAACCAATCCATCCCAGAGACATGTCCGCAGGGCCAGAGGCCAGAGCTCCAGAGCACAGGGAGATGGGCAGAACACAGAGTCTCAGGGCCTGATGAGCTCAGCCTATTCTCCTTTTTACTCCAGTGAAGATGAGGagtcagtgttaaccagccctGTACAACCAACTTCACTAGTAGGGATCCCCCATAGCCAGACCACCAACATCAGCAGTGCGGTGGAGGATGAGATGAACCAGAAGACTGGCAATACCTGCAATCCTCTCTCAGGGGCTTTCTCAGGCGTCTCCAACATCTTCAGTTTCTGGGAGGAGAGCCGAGAACAGCAGCAGTATCAAGAGGTGACCtgccactgcctgccctccactccccctcctccccctctccacactGTCCTGAGCAACATCAGCCGACGGCAGCGCAGCGAGCTGGAGAACAGGCTGGAACTGCTGCAGAGACAGCTCAACAGGATGGAGTCACGGATGTCCACAGACATCGGGGCCATAATGCAGCTGCTCCAGAGACAGATGGTGCTGGTGCCCCCGGCCTACAGCACAGTGTCCTCTCCCCCTGAACCGTCCCCCTCCCTTACCCTGAGGCCTGCAGAGAGGCTGGTGCAGCCCGTCTCACCGCTGGACTCGGAGACCCTGGCCTCCCTCtcacagTTCTTGATCCAAACAGATTTTGACTACAGCCTTTCCAAGTCCTGTGAGTCTCTCCACAGTGCAGTGGAGCTGTGTCTTCTGGAGCCAACCCGAGTCCTGGATCCAACCCCAGTCTTAGACTCTCTCCCCAAGACTCCTCCTCTTGGCAACAGCATCCACCCAGAGCATCGCGCCCTGGGCTTGTCCATCCATACAGATACTGAGCCCTTAAGCCTGGTCAACCATGGGAACTTCTCAGCGCCAGGGACAGGATTGGCCCAGTCAGACCCCTCAGAGGGCCGACGGAGGCTATCGCTGCCAGGGAAACGCACAGCTCTGGACCTGGAGAGCCCCTGGACTACTGCACACAGATACAGTTCTGACCCTGGGAGTTAGGGgccaaacagtgtgtgtgtaacactatCTCCCTGCTTATGGACATGGAGTCGTAAGAGGTACTCAAACAAAAACATATCCATACTGTTTCCCTCTCTGCCTGTGAAATAAAATGTCCTGCGTGTGGATAAAATTATTTTCTGGTCATAGAAGTCCTCAAAGCATCACTTTTCACAGATGTATGCTACCATTTGCAGTATTGTATATGGAAACATATTTGTCCTTGTTAGTCAATATCTGTCTCTGCTGTATATGTCCTTGTTGTCACCATGTAGGGGTTAAGTGTTAGCTGACTAACAGAACTCTGTTCTGTCTCATGGAGTTGTGATGGGAGAGCTGCTGCTAATTTTCATTAGTCTACtgatgttgctctgtctgtctggctcaatGGGTAACATAAATTAATTCTGGGATCCATATCTAATTCTTAAATTACTGAACTGAATTAGCAAGCAATATGCAAACTGTAAAACATTTCTGTTCTGTTATCATTGTGTGGTATCCTCTCATCTAGTTAGTCTAGATGTTGAATGAGATGGCGTGCGCGCTGAATAACATAATATCCAATCCTAGGCCAGCAGAGGATCACAGAATTATGACCTAATCTACTGAATGTAGTATCTGTCAGACCACAGCAATATTCCATGATGCAAGCGTATCACCTGGGCCTcaattctcctcctctctctgactgCAGAAGACCGACTGCTCAGTTACTGTAACAAGCAACTCCAAGTGTAATGACAATGTTTACACCTTTTAGAGCAGGACCTGTATGTGTTAGAACATTTTAGTTTAGGTTGTATCTATTGTTTGATAAAATATTTAGATGAAATATATTTCCAAGAAATCATTCAAAGAACATATCATTATGGATTATTGCTTAATTGTCATTCTGAATAGTACCATTAGCCTACCTATACTGTTATAGTGTGTTACTGTCCAGTTCTGGGAAATAGATTACTGCAGGAAAAGTAGCTTGTTATGTAGGGATATATTGTAAAAAATCTGAACTATTATTGTTTTGGTCAGGGTACAGTATTTATTGATTCAGTTGAATAGAGTTACTGTGTAGCTTGATGTATATTTGATAATGAACAGTTGGATACTACTCATGAATAAAAAGATGAACAAGAAATGCATTGTTTTGTGTATGGTCATACCTTGAAACCTTTCAAACATGGTCAATTGAACAGGCCAATGCACATGCCTTATTGCATGTCTGTTCACGTGCATTTTACTAAACATGTGTAATCTCACTTGTAGTGGGAATATATTAATTCATGGCATGTATATACTTCAAATAAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU836928 lncRNA upstream 26624 66409436 ~ 66411072 (+) True G737030
TU836923 lncRNA upstream 32875 66404321 ~ 66404821 (+) True G737025
TU836570 lncRNA upstream 92591 66343276 ~ 66345105 (+) True G736705
TU836568 lncRNA upstream 94564 66342122 ~ 66343132 (+) True G736704
TU836564 lncRNA upstream 97447 66338935 ~ 66340249 (+) True G736701
TU837083 lncRNA downstream 107706 66617085 ~ 66617353 (+) True G737161
TU837084 lncRNA downstream 107987 66617366 ~ 66617618 (+) True G737162
TU837112 lncRNA downstream 136960 66646339 ~ 66646563 (+) True G737189
TU837115 lncRNA downstream 139608 66648987 ~ 66649443 (+) True LOC118965632
TU837127 lncRNA downstream 150616 66659995 ~ 66660226 (+) True G737200
XM_021613386.2 mRNA upstream 177077 66223990 ~ 66260619 (+) True LOC110530387
XM_021613387.2 mRNA upstream 177889 66223982 ~ 66259807 (+) False LOC110530387
XM_021613381.2 mRNA upstream 218852 66210003 ~ 66218844 (+) False blvra
XM_021613382.2 mRNA upstream 218852 66210009 ~ 66218844 (+) True blvra
XR_002474518.2 mRNA upstream 296240 66139734 ~ 66141456 (+) True LOC110530386
XM_021613403.2 mRNA downstream 1046 66510425 ~ 66596240 (+) False LOC110530393
XM_036986010.1 mRNA downstream 1046 66510425 ~ 66596240 (+) False LOC110530393
XM_036986011.1 mRNA downstream 1046 66510425 ~ 66596240 (+) False LOC110530393
XM_036986012.1 mRNA downstream 1046 66510425 ~ 66596240 (+) False LOC110530393
XM_036986013.1 mRNA downstream 1046 66510425 ~ 66596240 (+) False LOC110530393
TU836376 other upstream 312358 66124208 ~ 66125338 (+) True si:ch211-106n13.3
TU835372 other upstream 769601 65666866 ~ 65668095 (+) True LOC110530364
TU835317 other upstream 835799 65599385 ~ 65601897 (+) True LOC110530360
TU835205 other upstream 1034597 65402223 ~ 65403099 (+) True G735512
TU835130 other upstream 1089199 65324935 ~ 65348497 (+) True si:ch211-207d6.2
TU837120 other downstream 145283 66654662 ~ 66655753 (+) True G737194
TU837146 other downstream 190307 66699686 ~ 66704085 (+) True kncn
TU837166 other downstream 289194 66798573 ~ 66802080 (+) False G737234
TU837167 other downstream 289194 66798573 ~ 66801060 (+) True G737234
TU837788 other downstream 661088 67170467 ~ 67215629 (+) True G737783

Expression Profile