RNA id: XM_021613403.2


Basic Information

Item Value
RNA id XM_021613403.2
length 8057
RNA type mRNA
GC content 0.47
exon number 16
gene id LOC110530393
representative False

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 66510425 ~ 66596240 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

AATCACATCGGCTGAGTTGTCTTTCCACATATGTGGGCGGCATCTACACAGAAACGGTGTGGGAATTATGTGCCGCTCTGACAATCTCTGCGTCAAAAATAGAGAATCAAACGAAACACGGCAGCATTTCTCGACTGTGATAGGATGAGCTTGGTGAAGTAGGCGGGCTGATTCTCTGCTGTCAGTGAAGTGCTCTGTACGAGAAGGTAGAACAGACTTCGATCAGCGACATTCACGACAACAATTAACAAACGgataaaaaaaagagaaaacatAGGGATAATGGACCTAAGCTTGCATGACGCTCTCACGGACGGGGCGCCTAAGTTAGGACCGGACAGCCTGGTGAGGAGGGACTTCATGGCCTCCCTTGAGAAAGAAACTTTTGATGACAAAGTGGGCGAGACTGTAGGAAAGACTGACTACCGCCCTCTGCTGGACGGAAAGGATGGGAAAGGATCCAGTATGATGCCAGGAGGACAGATGGGGACGAGGATGCagtggcaggaaccaatgggagaaAAGCATCCCTGTCCAACTGGACAACAGTCTGCCGTCAATTCTGACTACCTTTCAGGGCCAGTGTCTAGTATGATGGGGATACCTGGTGATCAGTGGGGGAACCAGAACAAAGGAATGAAGGACAGCAACATACCAGATTCCCTCATGGGTTTCTCCCAGCCAGGGATGATGAATATGAACATGGGTTCAGGAGGTATGGGGGGCATGGCTCCATTCCAGACAGGCATGCCTCCTATGGGCAACTCTCAGAAAGCCTCTCCTCTGTTTGCCTCTGAGCCCCACAAACAGTCCCAGTCCCAGGCCCCCTTTAAGCCCAACGACTCATACCCCTCTGCCCCGGGCCACAACACCCAGTCCCAGGACAACTCTGCAGtttggacaaacccaAACCCCTTGGCAGATGGTGAGTCCAGGCTGCAAGCCTCAGAGGGTCTCAGTCTCTCCCCCAGCGATTCAGTGGAGGAGAGCCCCAACTCCGACCCCCTCAGCCCCCACGGCCAGGAGACTGGCTCTGGGGACGAGAGGGGGACTGAGGGGGTCGACAGCGGCAGCATGCAGcagaagagaaagaaaaagaaaaggaGGCCCAGAGAGGAGCTGTATGACTTCATGGACAGGGAAGAGGCTCCGGACTCCtcgaaggaggaggaggagggcgagacagagagcgGAGCCTCGGACTGCCCGCTGAGTCTGTCCTCCCCGAGCAAGGAGGAGAGCTGGGAGTGTGAGAtccgagggaggggagggggtagggTCAGGGGCAGGAAGAATAAGAGCAGGATGAAGCTGCCAGAGGAGTGGGGGCCAACACCCCAGGAGCCCACGACACCCCATGCCACCCCAGCCTCTGTGTCTGCAATGGTGATGGCCTCCGGTCCGTTAAGCTCAACCCTAGAGAACATCTCCTCCCTCATAGCTGACCCCCAGACTAACCCCTTTAGCAGTTTTATAGAGGACACCAAACCCTCTCACACCTCCAATTCGCCGCCACTCACTGAGAACCCCAAACCAAGTCACATCCTCAACAAGGACCCTGCCTTAACAGACACTTCCACTAGTAACTTGAACATGTTTGAGCAACCTTCTCCAGCCAAGGTAAACATGGAGTGGGAGGCTGAGGCTCCTGTTAAAAACACTGCCTCTGCTCCCCTCCATTATGAACCCATGTGTATTGATGACTTCAAAATGCCCCCTCCCTTAGCCACTAAAGATGTCCTACCCCCCAAGAAGGAGGAGGCAGCTATGTCCTTCACTGACAAAGCCTCCTCTGATCATTGTAGTCGTGAGGCCAACGCATCTATTACTGACCAGAGGCAACTGGGTCCTAAGAGTTCCCCAGGCTTCAGCCCCCAGGTCTCACAGACCTCTTTCCTAGACTCTGTCCTGCAAACCCCCTCAGCCAGCACCCCTTTTTCACAGCCACAGGCCCTGTCTCAGACCACCACACCCCAGGGCCTTCCTCcaaacaccaccacctcctcctctttccagTGCACTTCTCCTCCACTGCTTAGCCACTCCTCCCAGCCTGATCATGACACTCACAGTCCCTGCCCTGCAGTGTGCTCAGGCCTCAACCCTGCAGCCCCGCCCTTTATCCCCACTACACTGCCACTCACAGAGCACCAGGAGCCACCGCTGCCAGAGCCCCCCCTGCTGGAAGTGAAAGCAGAAAATAAGGACAAACAAGAGAAGGCTGATTTCTTCCCCAAGGTGGATAACTTGAACATGTTTGATAAGACCGAGAAGTCGGACAAGATGGAGAATAAAGAGAAAAAAGATCAATCTAAGAAAGTCAATGCTGACAAGACAAACAAATCTGAGATCCTCAAAGACGAAGAGAAGATTGACAAGACAGAGAAAAATGTTAAAAATGAAAAAGTGGACAAGCCAGAGAAGACCAAcaaagatggaaagatggagaagAAAGAAAATGGAGAGAAAACAGAAAAGATGGTTAAAGTTGAGAAGAATGAAAAGGCTGGGAAAGGTACTGCAAAGTCCCCAACAACCATCAGAAGCAAGCAGGACCTCACCAGCCCAGACAGTAAGGCCAAGACTCCAGAAAACGGCACTTCTGACAGACGTCCTCCTGTGCCAAAGGCCAACGGCACGGCCAATAAGGACAGTTCCTCTACTACCCCCTCTACTAAACCTGCTGGGCCACGCCCCTCTGCTAATGTCCCTTCTCTGCGCCGCAACACAGTTCCCAAGACTGATATCAAGCCAGGTGACTTGAAGAAGCCTACTACGCTGAAGACAACACCAGCCAAGCCCAGGGTACCTCACACTTCTGCTACTGCTCCAAGCACTCCTGCAACCAACGGGGAGCAACCTCGCAGACGCATCACCAAACCCCCGGTGCCCAAGCAGACAGCTATGGAGAGGAAGCCAGCTGTACCCAGAGCTCCTAGGACTCCCAGGCCCATTAACGCACCCTTGCCAGACCTGAAGAATGTGCGCTCCAAGATCGGCTCCACAGACAACATGAAGTATCAGTCTACCGGTGGCAAGGTCTCCTCGGCGGGGGGTTCCCAATCCAAAGACGGCCAGGGCAAGGTTATGATAGTCCACAAAAAACTGGACTTCAGCCATATCACCTCCCGCTGTGGCTCCAAGGATAATATCAAGCATGTCCCTGGTGGAGGGAATGTCCAGATTCAGCATAAGAAGGTGGACTTGAGCAAAGTGACCTCCAAGTGTGGCTCTAAGGACAACATCAAGCACAAGCCAGGTGTGTCCACTACAGGGGGTGGCGATGTGAAGATTGAGGCTAAGGCCAATGGTAATGGCAAGCCCAAGGTGGGGTCAATGGACAATATTGGCCTTGAGGCAGAGGATGTACAAAACAAGGCTGGGGGGATGCAGGAGAAAGCTGAGGGGAAAACATCTCCCCCTGGTGGAGCTCCAGCCACAGGTGCAAGAAGTATGGCTAAGGAGAACGGACATAAGGAGGCCACACCTCACCCTAATCCCTTTGGGGGTGATGGGCTGCGAGACCCGATAGGCATGGGCATGGACAAACGCATCCCTGAGACAACAGATTGAGTCTTACAAGCTGAGCTTTCGCAAGCGTGCACGGGCTTGCACGAACCACGGCGCCGACATCATCTCCCGGCCCACCCCGATTGACAGCCACACCTCACCCTCATCGCAGCACCTCTCTCAGTGTTTCTCTGGGGGTCCGCCAGCTTTCTCCTCCACACCCTCCAGCTCCAACCCAGACCCTCGTCACACAGACATGAGGCAGGGGGACAACTACTGAATGCTAGCAGGACAGGGACTTCTTTAGCACATTTCAACTTCCTCCAGCACCTTCATTTGACCTTTTACCTCTCCTTTTACCATACTGTATCTAATCACTACTCTCTGTCCTTGTGGAATATTTTTCCTAGTCTTCTGGTCTCAGAGGAGCCAGTATTAAAGTATAGAGACCAGAGTTCAGATAGATAGACAAGCTCTTACTGTACAGTGGGGTTTGGTCTCTTCTGAATTGTCCTGGCTTAACTTGCTGTGATATAAGGGGAGTAGTATGACCTCAGAGTGAACCTTCTGGAATCTAGACCCTCAGTGTTCTGTTATAGTTATGTCAGCGCAGAATGAAACTTATTATACTGCCTGCTTCTTTTGTTCCAGCCTATAATTTCTGTTCTTATACGTAGTGCCACCTCGATTAAAATCACAAACACCTTCAGTGTCAGACTGTACATTTGTACGTATTTTACGTCAGACCATCACAATGAGCCAATGCTATCTATGTGACAGGCCTTACCCTAGACGTAACACCTTCCTTACTGTACCTATCTCTCTGGACGAGCATAACTCCCCTTGTACTGTTGGGACCCCAGATTTCACTTGAGttgtatacagtacattatacaaTGGCGATTAGTGAAGCACCCCTTATTGTGAGCATGTGGGATTGTCATGTCATCCCAATGAACAGGGGCTAATATGCCACTCCCTCTCTTAACCAATACAGTTTGTCTAGATAACCCTTTGTAAACGTGTGATTCCCCCACAGCACTCTCAACAACAAGATACTAGTAGGCTGTTACAAACAGTAGGATATTTAACATCTCTTTAAAAAACTCTGTATCGTGTTTTCGTCAATTATTGTAACAATGAGCTGATGTGTTGTTATGTGGTTTCATCATAATATACCATTTTCCTTTTACTGTTACATCTCTCTGAAAGCAATACAGTGAGTGGTCTTTGCCGAGGATACAActtcctcatacacacacatcccCGCACATGTGTGCAGTACGGTacagtcagagggagagagagacaaacaaaccCCTGCAGGGTCTGTGCACAGAGACTGGATGCCTGGGACAGGGCAAAATAGTAAGCAGGAGGCAGCAAACAGAGTGAGGAAAGGCCTATGATTGCACCAGGAGAGTAAAGATACTCCAATGCTGTTTGTGTTGTCCCCCAGTGATCAAGTCTCTGTAGTGTTGGGACAGGGAAGACGAATAGAAAGACGTTTTGAAGGAAAGCAAGATTTAGATAGATACATTTAACAATATAATCACCATTTTAAGTCAGTATCAAGAGAAGCTTGTGACGAACAAAGACAGTCATTTATTGATCTCCAATGTAACAATTGTCAGTCTTTTCAACTACTCCACTGTTAAATATGAATTCATTTGAATGGCTGCTTATGCTATTGGTTCCACTGTGAAAAGTGACATTATTGTGTAACAATAGCGCACAATTTCTTATTGGAGcagttttctttcttttttttaacaaaGAAGCTAATTACTCAGATTAACTTGCTGTCGGTTTTGTAAAGAGGTTGGCGGAATTGTATAACATTACATGACTATGAATTaggattcagtgtgtgtgtgtgtgtgtgtgtgtgtagtatgttgTGATCAACATTTAGGCATGTCTGTGGAGTTTGTCATATTAGTGGTATGTTGCTGGATCAAGTTCGAGGGCACCCCATTGCCTTTAAAATACTGGTAGTTTGGCTCTTAGAGTACAAAAATGGCACCTCCAACAAGAGGGATAAGGGCCCCAGATATTAATGTGTAATTGTGCCTTGTAGATTCTCAAGGCTAGAACCAGATCTCTCACAGGATGTATAAATCTGAAGCATCCCTTTATAGCTTCTTCTCACCATCAAATAttgtgatgagaggaagcccagtggcggGAAGTGGGAGAACATGGAGCTCGATGAAACCTGCAAATTTTCTGATAGATGAaacatctcaatacagttttctgttcccaaaactaacaTCTGTTAAGAACAGAGTAGACTAAGTTTTTGAGACTTCACCCTTTCTAAAATAAATGGCATTGTTTAGAAGGATTACAAGGGCAAATTGAGTAATTGCACAATCACAACTTCACAGAGTAGGAGTTCTCCAGCgtaaatatgcaaatacatgctagaacGGGCCAATAGGATTTCGCTAGTTCGTGCTTAGCTTTGCCCAGCTCTTTGCTTGTTCTGCTCAATATGCTtcatttgctcccattggaaacaaCATCGGTGGTATATCTTGGGTTAGTACAAATCTGTGGCTGAACTGTAACAGGTGTATAgttccccccaaaaaattatcTTTATGTCCCACCCTCAAACCCTTTTATTTTCAGATATTGTTATGTACTGTAATGATATAATGCTGCTTGATGTCGGTAAGGTGTCATTTGAATTTATTTGAGTGTGTGCACTGCAGTGGAGGAAATAATAGGGATTGTCAATGGCAGAGATAATCAAAGAGCAAGTTATCAAAATATCGAGAATGAAAGAAAAAGCACCTTATGATATTTACAAGTATTCTTTCCCCCCCAAGATTCCCATGGTTAGTTGAAAAACTGGAATGAATTGAATTCTTCCTGAAGCATAAGTCTTACACTGATGAAAGCACTTTGAATGCACAGTGGTATGTACATTTTATGTTTGAGCTCTACAGTATGTTAGAACTGTTGGCATGATTGGATGAACAGATTTGTCTTTTAGTCTCCTTGGTGGTGACCTTGCTGGTCACGTTAGTGGACTTTGGTGTCGTGCTTTGGGACAATGGTCACTCGCTCTGTCTGTTCTCCTTGTGCCTGTTAGACGTCACGTTTGTTAACACTCCCCTTTCCAACACGTAACCTCTGCTTGCAACACCATCCTTCCATCAGTCTTCACACAGTCGTTTGTAAATAGACATCCACATGTTTTTATCACCACAGGAAAAACAAATAGGTATTGATATTAGAGTCTTTATGGATGTTGACAAATGTATTTCACATCCATGAACCCATTTTCAAAGAGAGTGTTTTCTTTCTGGAGTCTGCCTTTTTCAGAAAGGGCTGAAGTACAAGAATGTTTTTAAAATGCAATGTATTAAAGATGCAAGACATAAATATCATATGTATgaactttttgttttgttttcaaaatcacAATAGGACACATAccaaggcctagattcaatcagatcaagcgttaaccAGCGATAGCAGACACCTGCATAGCGAATGTTTTGGTGGTGTCGGAGAAGGAAACTGCGTTGGAGCTGTCAAGTTattgagcagctgctcttgcaaTCATcaggaagcccccccccccccccccacactcgcATTAGAAGCTCAGAGTGAGaatatgtacactatatatatagaattacactcaaataaaaaaatcattcAACAAAATGAGGATTTCCATCATCATCACATTCCAGTGTTTGAagttgtaaacaaggctgcatgggatttctgttAATAATTTGactgtgcagccaatggcaatgtccgccTTAGGTATGAGagagccacttgtggatttgacagctctaacacagttccacctcagacactatgcggatgtcggctaaagcgcctctgattgaatagagccctaaatctACATTTGACTTGACAGTAGGAATGGTGGTTAGCATCTCAATGGTTGGTCAAGGTGTGTTATTACCAACTCCAACTCTGTAGAGGAATAAATTAACACTTTTATCTGCCTCTTACACTTAGGCCTGTACTCACTATATGTTAGAAATCTACATGGAATAAAGAATAATCCGGTTTCATACTTATTCTTCCAAATGTTTTGTGTCACTGGTGAGCTGACCGAGTGCCCAACTTTAATCAGGAACCAGGCATTGTGAGGATAGGTTGAAGGCCATGCTCCCAAATGCAGCACCTGACACACACAGCCCTTGATTGTCATCCAGACATCCCTCCCACATCCCCCATGTGAGACTAACAGTAACTGTCTTTTGGCATGTGTTATGTAGTGTGCTTCTGTAAAGCATCAAGGAGCCCATAGCTGTGCTTCGTCTTAGAGCACACCTGCAGTGTGTATTATTCTCCATAGTGCACACCATAAGAGCATGCAGAAGACAATGGATTGTAGACATCTGTCATAGATAGGAGTTCATTGTTTCCCCTTCGATTTGAGATGTAATTTGGTATGAAAGAGATGTTCATTGTGATTAATTGTTATCTAGTGATGTGAATATTAATCATGAAATAAAAGACAAGCAAACATTTGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU836975 lncRNA upstream 1224 66508095 ~ 66509201 (+) True LOC110530392
TU836928 lncRNA upstream 99353 66409436 ~ 66411072 (+) True G737030
TU836923 lncRNA upstream 105604 66404321 ~ 66404821 (+) True G737025
TU836570 lncRNA upstream 165320 66343276 ~ 66345105 (+) True G736705
TU836568 lncRNA upstream 167293 66342122 ~ 66343132 (+) True G736704
TU837083 lncRNA downstream 20845 66617085 ~ 66617353 (+) True G737161
TU837084 lncRNA downstream 21126 66617366 ~ 66617618 (+) True G737162
TU837112 lncRNA downstream 50099 66646339 ~ 66646563 (+) True G737189
TU837115 lncRNA downstream 52747 66648987 ~ 66649443 (+) True LOC118965632
TU837127 lncRNA downstream 63755 66659995 ~ 66660226 (+) True G737200
XM_021613401.2 mRNA upstream 1046 66437381 ~ 66509379 (+) False LOC110530392
XM_021613402.2 mRNA upstream 1046 66437696 ~ 66509379 (+) False LOC110530392
XM_021613386.2 mRNA upstream 249806 66223990 ~ 66260619 (+) True LOC110530387
XM_021613387.2 mRNA upstream 250618 66223982 ~ 66259807 (+) False LOC110530387
XM_021613381.2 mRNA upstream 291581 66210003 ~ 66218844 (+) False blvra
LOC118965632 mRNA downstream 52394 66648634 ~ 66649552 (+) False LOC118965632
LOC110530967 mRNA downstream 74863 66671103 ~ 66672607 (+) True LOC110530967
XM_021613413.2 mRNA downstream 102971 66699211 ~ 66704200 (+) False kncn
XM_021613414.2 mRNA downstream 115847 66712087 ~ 66714672 (+) False LOC110530397
XR_002474521.2 mRNA downstream 115847 66712087 ~ 66721454 (+) True LOC110530397
TU836376 other upstream 385087 66124208 ~ 66125338 (+) True si:ch211-106n13.3
TU835372 other upstream 842330 65666866 ~ 65668095 (+) True LOC110530364
TU835317 other upstream 908528 65599385 ~ 65601897 (+) True LOC110530360
TU835205 other upstream 1107326 65402223 ~ 65403099 (+) True G735512
TU835130 other upstream 1161928 65324935 ~ 65348497 (+) True si:ch211-207d6.2
TU837120 other downstream 58422 66654662 ~ 66655753 (+) True G737194
TU837146 other downstream 103446 66699686 ~ 66704085 (+) True kncn
TU837166 other downstream 202333 66798573 ~ 66802080 (+) False G737234
TU837167 other downstream 202333 66798573 ~ 66801060 (+) True G737234
TU837788 other downstream 574227 67170467 ~ 67215629 (+) True G737783

Expression Profile