RNA id: XM_021613421.2


Basic Information

Item Value
RNA id XM_021613421.2
length 3611
RNA type mRNA
GC content 0.46
exon number 16
gene id LOC110530403
representative False

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 67430853 ~ 67474302 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

AAAAGCAGCGCGCTCAGTCTTCTTGATGTGAACACACCCCTTGTCTGTAATGCGTCGGTAGGCTATACTTCCTGGTAAATTAACTAGTTTCTTCTAAAGAACGTTGACTTACAACTTCGTTTTCAGATAAAGACGTATGGTATAATATCACGCAATTTACTCAAACTCgttaaaaacaaagaaaacaggGTAATTCGTCTGAAAATGGGAAGCACCGTGATGGAGTCCAACAAGAAGGATATGAAAACCTCGAAGAAAAAGAGAACACTACGCCTAAATATGCCAGACGTAAGTGCTTTCGCCTTCCCCATACTGGACGGCAAGTCTGGAGGCTCGGGCAAGGATGGCTATCCAAATGGAGAGGTCTGCAGCCACTCTGTCAGCCCAACTAAAGGACTCTTTGTGAGGGGTGGTCCTGCCGGTGTCAGCCAACCCTCCAGTCCCATGGCTGCCCCTGCCCACTCCCAGTCCCGGATCAGCCCTGGCTCATCCAGAACCATTTCCCCCTACCTCTCCACCCACCAGGTCCCCTCACCGCCCAAATCCCCCCTTTGCCTCAGCTTCAGTGGTATATTCCGCTCTTCGCCCAACTCATCATCCAACTCTAGCATCAAGCTCTTTTCTAGGACCAGGAAAGTCTCCGGCCTCTCGTCTTCCCCCACCCCACCCAGCACCCCCAGCCTGCACATGCTGTTCCCCCAGGAGGTTCACCAGAGTGCCCCAGAGCGCCTGGAACGCTCCCTCTCATCACCCCCACCAGACACCGGACAGCGCCTCAGCCTGCCATCCTCTGCCAAGCCCCccatgtcctcctcctctccgatACCCTACGCTTTCCCACTGCCCCAAACTACCTCACAGCCAAATTTCTACGGTTTATTCGAAGGCATGCTGGAGAAACTTGACCTAAACGATGATGGTGTTGCTGCTGAACCAGACAGAGATATTTACATGCGCTTTATGAAGTCCCACTGCTGCTATGACATCGTTCCCACCAGCTCCAAGCTGGTCGTGTTCGACACTGGCCTACAGGTGAAGAAGGCGTTCTTTGCCTTAGTGGCCAATGGGGTGCGTGCTGCCCCACTATGGGATTCAGAGAGGCAGTGTTTTGTGGGAATGTTGACAATCACAGACTTCATCATCATACTACACAGATACTACAAGTCACCGTTGGTGCAAATATATGAGTTGGAAGATCATAAGCTTGAGACATGGAGAGAAGTATATTTGCAAGAGACATTCAAGCCTTTAGTGAACATATCACCCGAATCAAGCATATTTGATGCAGTGTATTCCCTCATTAAAAACAAGATCCACCGGCTGCCTGTCATCGACCCTGTGACGGGGAACCCACTTTACATCCTCACACACAAGAGGATCCTCAAGTTCCTACAGCTCTTTGTGCGTGAGATGCCCAAGCCGGCTTTTATGAAGCAGACTCTAGGAGAGCTGGGCATCGGCACCTACAAGAACATAGCCTTCATCCACCCTGACACACCCATCATCAAGGCCCTGCAGATCTTCGTAGAGAGGAGGGTGTCTGCCCTGCCTGTTGTGGACGTATCTGGGAAAGTGGTGGATATTTACTCCAAATTTGATGTCATAAACCTGGCAGCAGAGAAGACTTATAATAACCTGGATATCACAGTGACCCAGGCTCTGAGGCATCGCTGCCAGTACTTTGAGGGGGTCATGCAATGCCACAAGCTGGATACACTGGAGACCATCGTGGACAAGATTGTCAAAGCAGAGGTCCACCGGCTGGTAGTGGTGGATGATCGCTCGGCCATCGAGGGCATCATCTCCCTGTCTGACATCCTGCAGGCCCTGGTGCTCAGCCCAGCAGATGCCTGCAGAGAGGAGGGCCTCCTGGAGTGAGACGGGGGGCTACTGCTGCTGGAATCACAGAGGCTGTCCTACAATATATAACTTGTATTTTACAGGTAGctgccaagataaaggaaacacttgagtaaattagggatacaaagtctattgaaagcaggtgcttctaaacaggtgtggttcctgagttaattaggcagttgacatcccatcatgcttagggtcatgtataaaaatgcacagttgcccattattttctCACCGTGGCTAAAATaggagatctcagtgactttgagagagtggtctcaaaggagcatagggggtttaaagtggGTGTGTGTCTCCAGTGACCAGAtgtcaacccaattgaacacttatgggagattctggagtggcgcctgAGACGGTGCTTTCCACAACCattaacaaaacaccaaatgatggaatatCTCTTGGAAAAATCCCTTCTATATAATTCCAGACACTTGAAGTGTGCATTGAAATGCGTTGAAGCTATTCtggcggctcgtggtggcccaatgccctattaatatattggtgtttcctttattttgacagttaccttTACGTCCAGAGCCCTTCATATTGATGCACTAGACTTTGAAACCAAAGGGCTGGGCTGGATTGGACTGCTACTGGGGGCTAAATGGCTTTAATACTGGAGGACCAGCATCTCTCTGTCTGAATGGAACTGGACTTGATTCACTGTGGGGCTGAGCCAGTCTGAACTGTGGTTATGTATGTATATGAGGGCTATATACGTTTTGGTGTTTGTCTCAGTATCATGCTGCTCTGTCGTGTTAACAGTGCCTAGTCACTGGATAGTTTCAAACCTTCAATGAACAAGTAGATTGACAGATATTGCCAAGGCATCTTACTTGATGATACACACAAGCATGTGTATAAGTTACCCACGGGAAATAATAACCTGTTTGTATCGGTGGAGCTGGAACGTACTGGACCACTAAAAGTGATGGTTGAGTAAATAACGTCTATATTCTATGCTGTCAAACACAGACCATTTAGACAATATAATTGCATTCTTCATTTTAGTATCAAATGTGGCCATATTATAGCATGTTCTATGGTAAGCCACATGTTGCTATAATGAGTTGTTGTCCACACCCCTTTTAGGGGCTATATGCAGTCTCTTTGTCCAATCCTTAGTCACAGTGCCTTTTGCCTATTGCAGGTGTTCATGCTTTATCTGGTTATGATTGGAGGGGTTTTGTTTGTATATGAGTAACAtgctgtgaagagagacagatatatatattttgtattcatTCTCGATAACACTTGGGTTGAGATTTAGAGCCATTTATTTTGCCCGCTTTATGCACTTGAGCCATGGATCACTTCCATCTACAACATCTATAACATCTATAAAGCAAAATGGTGGATTCTGAACTGCTCTTGACCAGACTCCTGTGTTGTGGCCAGAGAATACACCTCTGACAACTCATCTATATTGtttcactgtaaataagaacgtTTTCAGGAAATGTGCCAGAGAAAGCTTTATTTTTATGTAACTTTAAAGAAATCATGTTAAAATAACTGCAGttttaatattatttttgtaaatatattgTGGCAAAATGAGCCAATATAAATAAAGATACTTTCTATTCAGAACAAGATGTACATGTGCAAGCATGAGAAACGACACTATAACAGTTGTGAATGTTCTTTACTTTTCTATTTTTCTGCGTGCAGAAAAATAAACGATGACACTGAATGTA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU838133 lncRNA upstream 816 67429485 ~ 67430037 (+) True LOC110530401
TU838184 lncRNA upstream 33741 67396880 ~ 67397112 (+) True G738149
TU838160 lncRNA upstream 88841 67341197 ~ 67342012 (+) True G738126
TU838159 lncRNA upstream 93492 67336689 ~ 67337361 (+) True G738125
TU838107 lncRNA upstream 165519 67265106 ~ 67265334 (+) True G738078
TU838316 lncRNA downstream 101569 67575871 ~ 67576087 (+) True G738260
TU838318 lncRNA downstream 102469 67576771 ~ 67577106 (+) True G738262
TU838407 lncRNA downstream 299146 67773448 ~ 67775640 (+) True G738344
TU838431 lncRNA downstream 328020 67802322 ~ 67804768 (+) True G738367
TU838913 lncRNA downstream 398973 67873275 ~ 67873508 (+) True G738793
XM_036986029.1 mRNA upstream 782 67290677 ~ 67430071 (+) False LOC110530401
XM_036986030.1 mRNA upstream 782 67290677 ~ 67430071 (+) False LOC110530401
XM_036986031.1 mRNA upstream 782 67290677 ~ 67430071 (+) False LOC110530401
XM_036986032.1 mRNA upstream 782 67290677 ~ 67430071 (+) False LOC110530401
XM_036986033.1 mRNA upstream 782 67290677 ~ 67430071 (+) False LOC110530401
XM_036986046.1 mRNA downstream 103543 67577845 ~ 67688361 (+) False LOC110530407
XM_036986043.1 mRNA downstream 103544 67577846 ~ 67693642 (+) False LOC110530407
XM_036986044.1 mRNA downstream 103544 67577846 ~ 67693642 (+) False LOC110530407
XM_036986045.1 mRNA downstream 103544 67577846 ~ 67693642 (+) False LOC110530407
XM_036986047.1 mRNA downstream 103544 67577846 ~ 67693642 (+) True LOC110530407
TU838049 other upstream 198940 67231182 ~ 67231913 (+) True G738020
TU837788 other upstream 215224 67170467 ~ 67215629 (+) True G737783
TU837166 other upstream 628773 66798573 ~ 66802080 (+) False G737234
TU837167 other upstream 629793 66798573 ~ 66801060 (+) True G737234
TU837146 other upstream 726768 66699686 ~ 66704085 (+) True kncn
TU838300 other downstream 71827 67546129 ~ 67547609 (+) True G738244
TU838937 other downstream 432075 67906377 ~ 67922622 (+) True LOC110530413
TU839857 other downstream 1384081 68858383 ~ 68858753 (+) True G739648
TU839882 other downstream 1429063 68903365 ~ 68906965 (+) True G739670
TU839922 other downstream 1530035 69004337 ~ 69005116 (+) True G739708

Expression Profile