RNA id: XM_021613433.2


Basic Information

Item Value
RNA id XM_021613433.2
length 3148
RNA type mRNA
GC content 0.48
exon number 14
gene id LOC110530410
representative True

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 67693817 ~ 67726942 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TCCCTGTCGACAAGAAAAATATGATCGCGCAGCGTTTCTATTTCGGCACGTACCCCGACCCAGAGAAAGACGGACATACAAAAGGGTGAAGAAAACGATGTAACTCAACGGTATTGTTGTACCGCAAACACTTTTTGCTAGAATTAAAGTATTATTTATAAGAACATGAAATAGCCGTTGTTAGTTCGAAGTAGGCTACTGCTAGCAGGCTACTGTACAGCAGTTGCAACGAGACGAGGTGCAGTGCACACCTCCCCCACAAGTCTAGCCGCTGTCACTTCCATTTCACCGGTGTGTTTTGGTTCGATAGGCGGTGCGCGCTGACAATTTGTCAATCAGTTGTCGACACTAAATAGACTGGTTGTGATCGATGGCGAAACCAGAACCAGCCCAGCAACATGTGGAGGAGAAAGCGGAGGAGATTGACGACGCAGAGTTGGCATTTAAAGGAATAAACATGCTGCTCAACAACGGATTCAAGGAGAGCGACGATCTGTTCAGAAAATACAGGACCCACAGTCCACTGATGAGTTTCGGAGCCAGTTTTGTCAGCTTTCTGaATGCCATGATGACGTTTGAGGAGGAGAAGATGCAGATGGCCTTTGATGACCTCCGAGCCactgagagactgtgtgagagcgACAACACTGGGGTCATAGAGACCATCAAAAAAAAGATCAGGAGGAGTGACTCCCAGAGGTCAGGGGTGGCAATAGTAGACCGTCTCCAGAGACAGATCATTGTGGCAGACTGCCAGGTGTACCTCGCCGTCCTCTCTTTCATCAAACAGGAACTCTCATCATACATCAGAGGAGGCTGGATCCTCCGCAAAGCCTGGAAGATGTACAACAAGTGTTATAGCGACATCAGCCAGCTGCAGGATTGCAGCAAGAGGAGGTCCTCCGACCAGCAAGggtctccctctccatccactgAACAGGCCAACCGCAACCACGCCACGCCCCCAACCCAGATGACCAATGGGGTGAGCCCGGAGGCCCTGGAGAGGCTCAAGGGCTCGGTCAGTTTTGGCTACGGCTTGTTCCACCTGTGCATCTCCATGGTACCGCCACACCTGCTGAAGATCGTCAACCTTCTGGGTTTCCCTGGCGACCGCCACCAGGGGCTGTCCGCCCTTACGTATGCCAGTGAAAGTAAGGACATGAAGGCCCCCCTAGCTACGTTGGCCCTCTTGTGGTACTATACGGTAGTGCAACCCTTTTTTGCCCTGGACGGCTCAGACACACAGGCCGGCCTGATGGAGGCTAAGGCTATCCTCCAGAGGAAGGAGCCTGTATACCCTAACTCCTCCCTCTTCTTGTTCTTCAAGGGCAGGGTGCAGCGCCTGGAGTGCCAGATCAACAGTGCCTTGATGTCCTTCCAAAATGCCTTGGAGCTGGCTACAGACCAGAGGGAGATCcagcatgtgtgtttgtatgaaaTAGGGTGGTGCAGTATGATCGAGCTGAGGTATAGTGACGCCTACAGGGCCTTTCAGCGTCTGGCAACTGAGTCACGCTGGTCCCAGTGCTACTACGCCTACCTAACTGGAGTGTCCCAGGGAGCATCAGGAGATCTGGAGGGGGCTGCCGCTGTCTTCAAGGATGTGCATACGCTTCTGAAACGGAAGAACAATCAGATAGAACAGTTCTCTATGAAGAGGGCGGAGAGGCTAAGGAAACACTCCCCATCCAGAGAGCTGTGTGTCCTGGCTGTGATCGAGGTACTTTACCTGTGGAAGGCTCTACCGAACTGCTGCACCTCTAAGCTACAGATCATGAGCCAAGTTCTGCAGGAACTAGATGACGTCTCAATTGCTGGCCTGAAAAACCTGCTTCTTGGTGACATACACAGATGTCTCGGCAACATAAAAGACGCCATTGAGTGCTTCCATCTGGCTGCCGGAGATGAGGTGGGTCGTCAGAACAACTCCTATGTGCAGCCCTACTCCTGCTACGAGTTGGGCTGTGTTTTACTGGACAGCCCTGAGTCTGAAGCGAAGGGCAGAGCTCTGATGCTTCAGGCCAAGGATGACTTTGCTGGCTATGACTTTGAGAACAGGCTCCATGTACGCATCCACTCAGCTCTGGCTTCCATGAGGAAGGAGGTGGCCCCACCTTGACTACTGCCCCATTCCTCCACCATACATCCACCCTAGCTCTGCGTTGAGGGTAGAAGGATCTGGAAACAACTACAGAAGCCATCTTGATCTTCACTGTGATGGTTCACtgcaatgtgtttgtttcagttgACTTATGTTTGTATAATGAATGTGCCATCAAGTTTGTAATGCGTAGTTTACAGTAAATCTCCTGGAGGGATAGTGCAGACTACTGGAGTGTAATTGTGTGTTTCAACCAGATCAAATATGTACAGTAGTTGCTGCTGGGAGGCAAATGTAACTTTTTACCAAGGAAAAATATATTGGGGGAAAATCTGTCAGTGAGACAGCAGGTAGTCTaatggttaagagtgttgggccagtaactgaaaggttgctggttcaaatccctgtgccgactaggtgaaacatctgtcgacatgcccttgagcaaggcattaaCCCAATTGCTCCTGTACGTCGCTTTGGAtacgagcgtctgctaaatggctaaaATGTGAATAGTACCATATCTTTCTCCCATAAGATATGAAAGGGTTCTGATTGAAAACTGTGTATGACGCTTCATTATAAAGCAGTGAACTTGTGCCATAGAAACCCTACTGTCTAGGTTTCTGCCAGATGACCTCAAAGTCCTGTTGCTCTTACAGTAGTAAACAATCTGAATGCACAATCCCTGTGCTACTACTCATCACCTGGCCATTGTCACTGTAAATTGACCTTAGGTTATACATTGTGAATCCATTAAAGATATCCTCAAACATGTTACAACGttgttacttaaaaaaaacatgtttttactggTTTTAATAACAAGTCTATTGATATTGAAAGGGAAAACCCCTATTCATATCACTGTAAATATAGATATGGTACTAGCTAAATTACATTGTCCTTTTGGCACTCACTTATGTGTATAACATCTACACTCTGCTGTACTTGTATTTGCTGGAGACTGGTTTTCCTTTGTTGCTGTGTTTTTTATGTATAAGATCATGTGTTAAAACAATACATCTCTTAAATCTA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU838318 lncRNA upstream 116711 67576771 ~ 67577106 (+) True G738262
TU838316 lncRNA upstream 117730 67575871 ~ 67576087 (+) True G738260
TU838133 lncRNA upstream 263780 67429485 ~ 67430037 (+) True LOC110530401
TU838184 lncRNA upstream 296705 67396880 ~ 67397112 (+) True G738149
TU838160 lncRNA upstream 351805 67341197 ~ 67342012 (+) True G738126
TU838407 lncRNA downstream 46506 67773448 ~ 67775640 (+) True G738344
TU838431 lncRNA downstream 75380 67802322 ~ 67804768 (+) True G738367
TU838913 lncRNA downstream 146333 67873275 ~ 67873508 (+) True G738793
TU838918 lncRNA downstream 155921 67882863 ~ 67883114 (+) True G738798
TU838959 lncRNA downstream 197665 67924607 ~ 67983064 (+) True G738832
XM_036986043.1 mRNA upstream 175 67577846 ~ 67693642 (+) False LOC110530407
XM_036986044.1 mRNA upstream 175 67577846 ~ 67693642 (+) False LOC110530407
XM_036986045.1 mRNA upstream 175 67577846 ~ 67693642 (+) False LOC110530407
XM_036986047.1 mRNA upstream 175 67577846 ~ 67693642 (+) True LOC110530407
XM_036986046.1 mRNA upstream 5456 67577845 ~ 67688361 (+) False LOC110530407
XM_036986048.1 mRNA downstream 32442 67759384 ~ 67769486 (+) False LOC110530969
XM_036986049.1 mRNA downstream 32442 67759384 ~ 67769486 (+) True LOC110530969
XR_005052937.1 mRNA downstream 177574 67904516 ~ 67906729 (+) False LOC110530413
XM_036986052.1 mRNA downstream 177574 67904516 ~ 67924427 (+) False LOC110530413
XM_021613439.2 mRNA downstream 178107 67905049 ~ 67924427 (+) False LOC110530413
TU838300 other upstream 146208 67546129 ~ 67547609 (+) True G738244
TU838049 other upstream 461904 67231182 ~ 67231913 (+) True G738020
TU837788 other upstream 478188 67170467 ~ 67215629 (+) True G737783
TU837166 other upstream 891737 66798573 ~ 66802080 (+) False G737234
TU838937 other downstream 179435 67906377 ~ 67922622 (+) True LOC110530413
TU839857 other downstream 1131441 68858383 ~ 68858753 (+) True G739648
TU839882 other downstream 1176423 68903365 ~ 68906965 (+) True G739670
TU839922 other downstream 1277395 69004337 ~ 69005116 (+) True G739708
TU841127 other downstream 1809458 69536400 ~ 69538276 (+) True G740827

Expression Profile