RNA id: XM_036986049.1


Basic Information

Item Value
RNA id XM_036986049.1
length 5912
RNA type mRNA
GC content 0.49
exon number 15
gene id LOC110530969
representative True

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 67759384 ~ 67769486 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GCAGCCGCGGAATTTTATATCATGGATTTGAATCAATCCAATATTGTCGTCCTCGATGTGTCTCAAGAGGAGTTACACCTATCTGCAAAGATGGCTTCCAGGAGTACGCCACACTTCAAGCCCCCGTTGACCATCATCATCCCATACGGGCTGAAGAGTTGGCTAGAATGTCTTTGCAGAGCGATATTCATTGAGGGACCAAGGCAGATACCGGAATTTATTGCCGCCTATTGCGTTGAGCTGCTGGAATTTAGAGAACGCAATCCTTTGATGGATACCAAGGATGTTACACATCTGTACCAGGAGATACGGGAGTCAAATTACGTCAAAGACTGGATAGTATGCCCAGTGCCACAAGCTGCCATAGACTGCTGCCTGACTGAGgagaccctgtctgtcagccaGAGGACCAATCCAAGGTCGTTCAAGGTCCCCTCCAGCAAGCCCATGGGTGAGCCAGATAAGCAGGTTCAGACTCTGAGCAGTCTCCCTGGAGAAACCCACCATAGAACCCACCCTGGAGATGGACCTCAGTCCAGCCCAACCGACCTTGGAGGTCAACCCAGCCCAGCTGTGGAAGAGGAGGCCCAGGCCCGGCCAGGCTCTGCTGTGAAGTCAGTTGTGTTCCAGAGGGCTCCATCATTGGACAGTCTACTCGAGGCCAACCATTCTCAAGTCTTGATCAGCGCTCCAACCGATGACGTCATTATCTCCCACTCTGCGAACCTTCAGGAGACCATTGTCTTCCGAAGCAACAGTCGTCCATATTCAGGTGTATCTCCCCGAGGTAGTTTGACTAGGATTCCTTCGGTTGGTGAGGTTGTTAAGATCGGGGTGAATGACACAACTGAAGTGATGTCTGATGTGGTGGTGTTCCACCAAGTGTCCTCAGTGGAGAACCTGCCCTGCACGCTGTCTGCCTTGAGTAATACCTCTTTAGCTGCTGAGGAAACAGTGGATCAGTTGATGAGAAGCAGAGAATTCTTACTGGAGAATGTGGTGTCTGGCTCGCCGTCCATTAAGATGGTGGCTTCAGCTGCAGCTTTGCAGCAGGCAAACACGGAGAAAGTATCCTCCTCAGAGATAGTGGGAGTCGGCGCAGCACGGAGAGTGTCCTCAGTCAGGATACCcagtagagaggagagtgtggGGAGAACAACAGAGACAATAAAGAGATACACATCTCCACAAATATCTCTTCTGTCAGCTCATTCTGCTGAATATCTGAAGGCTACATACAAGCCATCCACCCCCAGCCTTGCCAGGGTTTCCTCTGCACCttgtggtgagagagaggcaaCAGCAACTATTTCACCTAAATCCAGTCTGGCCAGGGTTTCCTCTGTCTCTACTGACTCTCCAGTGATGTTTGAAGAAGAGGACTGTTGTGTAATCACCACTCACTCTGCTTCAGTGAAGAAAGTAGTCAAATTGGCCCACTCAGAAAATATCTCTCCTACTACTTCACCCAGCATAGACCTGGCCTGGGAGGAGCTTCTGCAGACATCAGCATCCGACGTGGATAAAGTAGCCCTCAAGGCTTTCGAGATTGTGAACCAAAAATTACAATGCTTAGGGATAGAAACATCTGAATTGGCCTCATCCAACCCTGTGGTTGTGTCTCAGTCTCTTAACACTCTCTCTTATAAGGATCTCTCTCACTCGCTTTCAGCTGTGGAGGAATTCTCTACTGCCTCAGCAAGACACTCAGAAGGTGACATCTCTGAAATAGCTTCCTCTGAAACAGCAGTAGAGGGAGAAGCAATCTCTGTTAGGGAGATTACACCAGCAGTGTCTGCAAGGTGTTCTACCAGTAATGTATCAGAAAGAGTTCCCTTTGAAAAAGTAGTTTTGGGAGCAGCAGTACCATCATTGGAGGAGCTATCAGAGTCACCAACTGCACTTGCCTTTGTGGGTGAGGCTTCACCAGCAGTGTCTGCCAATGATGTATTAGAAAGAGCTCCCTCTGAAACTGCAGTAGTGGGAGCAGAGCTACTAGAGAGACACACAACTCCAAAAGTACCTCCACAAACATCATTTGTGTCAGCTTATTCTGATGGATTGATGAATGCTACAAACTTGTCACCTCAATCCAGCCTGGCCAGGATTCCCTCTGGATATATCAGTGAAGGTGTGTCACCAGCAGTGTCTGCAATATGTCCTGCTAGTGACTTGCCAGAAAGAGCTTCCTCTGAAACAGCAGTAATGGACTCAGCGCCCAGAGTGATCCACTCTACACCATCAATGGATGAGCTACTGGTTTTACCAACTTCTGTTGATGGGTTTTCACCAGCAGTGTCTGCAAGATCTTCAAGAGGTACTTTGTCAAAAAGGGCTCCCTCAGAAACAGCAGTGGAGGGGGTAAGATATTCTGAAAGTGGTTTATCAGGGAGCGCTTTCTCTGAAACAGAACTAGTTGATGCAGCACAAAGCGTGTCCTCCGTCAGGATACCcagtagagaggagagtgtggggagaacagcagagacaccagagagacacacatcTCCCAGAGTTTCTCCACAGACATTTTCAGCTACAGGCTTGTCATCTAAGCCAGAGCCCCCTCTGAGTGATTCTCTAACAGAGTCAGGATCTTTGGAAGTCATCTTTAATATGGAGGAGACTTATACAACACCATCTATGGGGGAGATTGTTCCACCAACTCCTGCTGGGGATGGCATTTCTGCCTCTACTGGTGAAAGAGCAGCAGAATCAGCTTCTAGAGAACTGTTGTATATGGATGAGACATATAAACCACCATCAATGGCAGACCTACCAGGGTCTCCAGCTGCTGTTGGAGGCATTTCACCAGCAGTGTCTGATAGATGTTCACAAAGTGACATGGCAGAAAAAGCTCCCTCAGAAACAGCAGTAGGCAGTCACACATCTTCCAGAGTACCTCCTAAAGTTCCTCCACAAACATCCTGGAGCTCAGCTACAGGCTTGGCATCTAAGTCCAGTTTGGCCAGggttccctctgtgtctctcagtgATGGTGCAAAAGTACCAGCTCAGATAGACAAAACACTGTCAATGGAGGAGCTACTGGCGTCTCCATTGTACTCTCAGTGGGCAATGTCACCAGCCAGTTCTGAAAGAGTGTCCTCAGTCAGGATACCcagtagagaggagagtgtggggagaacagcagagacaccagagagacacacatcTCCTCTAGATTCTCCAAGAGTTTCTCCACAAACCTCTCTTGTATCAGCTCATGTTGTTAAATCTCTGTCTGGTACAGACATTTCTCAACAATCCAGTCTGCCTAGGATTCCCTCTGCACCATCAATAGACAGATACACATCTCCCAGAGTTTCTCAAAGAGTTTCTCCACAATCCAGTCTGGCCAGGATTCCCTCTGCACCATCAATGGAGGAGCTACTGTTGTCTCCCTCTGCTTCTGTTGGTAGAGTTTCTACAGCAGTTTCAAGACGATCTTTAAGAAGTAGTTTGTCAGAAAGAGCTCCTGAAACAGTCATAAGGTATTCTGAAAGCATTTTATCAGGAAGAGCTCTCTCTAAAACAGAACTAGTCGATGCAGCACAGAGAGTGTCCCCAGTCAGGATACCcagtagagaggagagtgtggGGAGAACACCAGAGACATGCACATCTCCCAGAGTTTCTCCTAGAATTTCTCCCAGAGATTCTCCACAATCCAGTCTGGCCAGGATTCAATCTGCACCATCAATGGAGGTGCCACTGGTGTCTCAATCTGCTGCTGTTGGCAGAGTATCTCCAGCCAGGAGTGGAGTTTCTCTAGTAATGCCTCTAGGAATTTCTGCAGCCAATGTGGTTGGGCCAGTGTGTTTCAAAGATGTGTCACAGATTATGCCGACTAAAACACCTGagaatcaGGGTTCGGCCTCCTCCGTCAGAATACCcagtagagaggagagtgtggggagaacagcagagacaccagagagacacacatcTCCCAGAGTATCACCAAGAGCTTCTCCAGGAGTTTTTCCACAAACCTCTCATACATCGGCTCACGTTGGTGAATCTCTGTCTGGTACAGACATTTCTCCACAATCCAGTCCTGCCAGGCATCCCTCTGCACCGTCAATGGAGGAGCTACTGTTGTCTCCATCTGCTTCTGTTGGTATAATTTCACCAGCAGTTTCAAGAACATCTTCAGAAACAGCTCCTTCTGAAACAGTCATACGATATTTTGAAAGTGATTTATCAGGAAGAGCTTTCTCTGAAACAGAACTAGTCGATGCTGCACAGAGAGTGTCCTCAGTCAGGATACCcagtagagaggagagtgtggGGAGAACACCAGAGAAACCAGAGAGACACACATCTCCCAGAGTTTCTCCTATAACTTCTGCAAGAGTTTCTCCAAGATTTTCTCCACAAACATTTCTTCTATCAGCTCAAGTTGGTGAATCTCTGTCTGGTACAGACATTGCACCACAACCCAGTCTGCCCGGGATTCCATCTGCAGCATCAATAGAGGAGCTACTGATGTGTCTAACTGCTTCTGTTGAAAGAATTTCACCTGCAGTTTCAAGATCTTCAAGAAGTAGTTTGTTAGAAAGTGCTTCCTCTGAAAAGGCAACAATTAAAGcagtatacagagaagagagtgtgGAGAGAACAGCAGAAACAACAGAGAGTCACACAACTCAACAAGTGTCTTTCAGAGCTCCTTTGGCAACATCTAAGACAAGAGTCCTTTCTGATGTGGCAGTTTTGTACAGACCATCCATTGCTGAAGGCCTTTGTCTTGAGGTCTTGGACATGGAGTCTGACCAGGTGAAAACACCAATGAGTGCCATAGCTCCCTCTCACACTGCAGCAATGGAAACAGCTCAGGATACAGTCAGGATACCCAGTAGAAAGGAGAGTGCAAGGAGAgcagcagaaacacaaacatattttgcatcAGGATTATTGGACAACAGTACACAAGTTTCAGGAACTTCAGTCCGCCTTCATGAAGAGGTGACTGCCCACCCTACCGAAGTGCAGCAGGGGACCCTGCAACTTGGAGTTTCTCTAGGAGTTTCTCTAGCCAATATGGTTGGGCctcaaaacacacagtcacagagtgTACAGACTGGACCAGATTATCATGACCCGCCCTCACATAGCGTTCCTATTGGAGCAGGACGTGTCACTCCTGATGCTCAGCCTGCCTTCGAGGATTTTACCAATCAGGTCTGGACACTATACCACTTGGACAATGAGACGGAGGAGGGCACACTGTCCACTAACACTATCTCCCAGCCTCCGTTCAATGGAAGTGCTTTCATTCGCAACTTTGGGTCTGGACATGTGTTACTGGCAGAGAGGTCCCCTTCCCCTCAGCAGTCTGACCCCCAGTCCTGGTGTGGCCGACCCAGACAACAGCCCCAGCCACCACCTTTCCCAATGTACCCAAGAAGGGCCTTCAGACCCAGGTCACAGAGCTCAACCCGCCGCCCTCCACCCCAGCATCCGACTATCCTCAACCTGGAGATCAGCATCCCCAACTACTTCCTGTTCCTCGATGGCAACCAGGTGTCCCTGAGCCAGAGCACTCGTGGTGTTCCGGCCTCAATGTTTTCCAGGTCGAGATCTGCTGTGGTCAGGTCGGACGACCCCCCGGGGTACCTGTCCTTCTCCGTTCCAATGGAGATGGTGAGCGGAGGTTCCGGTCGGGACGGTCAGGCCCAGTTCCTGCAGGTCATCAGTGATGAAGGAAACACTGTTTACTCCCCTGCTCTCATACACATTGTCACCTCTGAACCCACAGAGAAAGAGGACCAGGAAGAATCCGTGAGGTGGCCAACTAGTGGCCCATTTAATTGGTAGGAGACTGTTGTCTAGTATCAATGAACATGTTTGCATATCATTTAAAACGTTCTCCCTCTTCATTAAATAAACACATGTTTTAAGTGAGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU838318 lncRNA upstream 182278 67576771 ~ 67577106 (+) True G738262
TU838316 lncRNA upstream 183297 67575871 ~ 67576087 (+) True G738260
TU838133 lncRNA upstream 329347 67429485 ~ 67430037 (+) True LOC110530401
TU838184 lncRNA upstream 362272 67396880 ~ 67397112 (+) True G738149
TU838160 lncRNA upstream 417372 67341197 ~ 67342012 (+) True G738126
TU838407 lncRNA downstream 3962 67773448 ~ 67775640 (+) True G738344
TU838431 lncRNA downstream 32836 67802322 ~ 67804768 (+) True G738367
TU838913 lncRNA downstream 103789 67873275 ~ 67873508 (+) True G738793
TU838918 lncRNA downstream 113377 67882863 ~ 67883114 (+) True G738798
TU838959 lncRNA downstream 155121 67924607 ~ 67983064 (+) True G738832
XM_021613433.2 mRNA upstream 32442 67693817 ~ 67726942 (+) True LOC110530410
XM_036986043.1 mRNA upstream 65742 67577846 ~ 67693642 (+) False LOC110530407
XR_005052937.1 mRNA downstream 135030 67904516 ~ 67906729 (+) False LOC110530413
XM_036986052.1 mRNA downstream 135030 67904516 ~ 67924427 (+) False LOC110530413
XM_021613439.2 mRNA downstream 135563 67905049 ~ 67924427 (+) False LOC110530413
XM_021613468.2 mRNA downstream 416421 68185907 ~ 68198975 (+) False LOC110530418
XM_021613466.2 mRNA downstream 416593 68186079 ~ 68198975 (+) False LOC110530418
TU838300 other upstream 211775 67546129 ~ 67547609 (+) True G738244
TU838049 other upstream 527471 67231182 ~ 67231913 (+) True G738020
TU837788 other upstream 543755 67170467 ~ 67215629 (+) True G737783
TU837166 other upstream 957304 66798573 ~ 66802080 (+) False G737234
TU838937 other downstream 136891 67906377 ~ 67922622 (+) True LOC110530413
TU839857 other downstream 1088897 68858383 ~ 68858753 (+) True G739648
TU839882 other downstream 1133879 68903365 ~ 68906965 (+) True G739670
TU839922 other downstream 1234851 69004337 ~ 69005116 (+) True G739708
TU841127 other downstream 1766914 69536400 ~ 69538276 (+) True G740827

Expression Profile