RNA id: XM_021613439.2


Basic Information

Item Value
RNA id XM_021613439.2
length 2839
RNA type mRNA
GC content 0.46
exon number 3
gene id LOC110530413
representative False

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 67904516 ~ 67924427 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GGCTAGTGGAGGTGTTTCCTTACTTGTGGAAACTTTTAGCGGAAGTTTCAATTCATTGTAGATACCACAGACGACGTATATAGTGATGTAGATGCCAAAGCGTTTCCCACGTAACAAAAGTTCTGATGCTGCCTAGACCTGCGCGCACTTCATGATAGGCAATGAATGAGCGTTGTTGAGCAAGACGATATATATATAATTGACAGCATCTTTAGGTCATTATATGCATATTCGAATAGGCTGCGCCGGTCGGCGAGGTGACAAGCAAAGGACATACTGAAGTTACATTTTGGATGCGTGGATGCAGATGCGCATGGATTGCAGGTGTTGTATTGCCTATTTCCAACTCCTTGGAATATCCGTCAATGATTTAACACAATTTAAAGCTGATAAATAAGATCATGGGGGGAGATCAACTCGATGCCAACGCAAGCTGGAATTACATGCATAACGACTCAACCAAAATGTGGAGCGACAACGCATTCACAGCGCCTGTCATGGTCATTCTTTTGATGATGATGGTAACTTTGGTGGTTGTGATAGTTTTGGGAAACGCTTTGGTCATTTTCGCCTTTAAAGTAGACAAGAGTCTGAGGAGGCAAAGCAACTATTACTTCCTGAATCTCGCCATATCGGATTTTCTTGTTGGGGCATTCTGCATTCCAGTGTACATCCCATACATCCTGACAGGGAGATGGATGTTGGGCAGAGGACTGTGCAAACTGTGGCTGGTCATGGACTACTTGCTCTGTACTGCCTCTGTCTTCAACATTGTCCTGATCAGCTATGACCGCTTCCTCTCTGTCACCAGAGCGGTGAGCTACCGTGCCAGACAGGGCATGACCCACCAAGCCATCATGAAGATGATAGCAGTCTGGGTCCTGGCCTTTGTCCTCTATGGCCCTGCCATCATCTTCTGGGAGCTGGTGGTGGGGAAGAGCCGTGTCCCAGAGGATGAGTGCTACGCTGAGTTCTACTACACCTGGTACTTCCTCCTCAGTGCCTCCATGTTGGAGTTCTTCTCCCCCTTAATCTCCGTAACCTTCTTCAACCTCAGCATCTACCTCAACATACGTCGGAGGAGGCTCCGGAACAGAGATGAGACGAGTGGACAGGCCCACGCGCCTGATGGACAGCCCCCTCCCCTGGGGAGAGGGGAATGCCTCCGCCTCACTTCCCTCTTCTCCCGGAACTCGGTAGTGGTTAAGAAGCTGTCTAGCACTGTGTCGGTCCAGGAGAGGGGATCAGGCTCGGGGTCCTTCCACTCCCAGATCTTCCATCCCCCCTTGGAGCGGCAGGACACCTCCACTAGGGGCACACAGCGCAGCTGCCTGTCAAGGGACAAGAAGATTGCCAAGTCGCTGGCTgtcatcgtgtgtgtgtttgctgtgtgcTGGGCGCCCTACACCCTCCTGATGATCATCAGAGCCGCCTGTAAGGGACGCTGCGTCCAGCACCACTGGTATGAGGTCACCTTCTGGCTGCTGTGGCTCAACTCGGCCATTAACCCTTTCCTCTACCCGCTCTGTCACAGCAGCTTCCGCAGGGCCTTCGGCAGGATCCTGTGTCCCAGACGGAGGGCAACTCAGCTGGCCACCAACTGACCTGCAGCATGGCCAATCACTTAAGGGCCTCTACTGTATCATGTGATGGATAGGCCAGTAGCCAGAGAAGTGGTGACCCAAAGGAGATAATCAAGACTAAAACTGATACTTTAGCAATGAACATTTTTAATGGAACAAAACAGATTGTCTTAGATGTGATAGGCCAGTGGCCAGAGAAGTGGGGTGAATCTCGAAAGCCGAAATGACTCAAAGGTGATACTACATAAACTCAAAGGTGATACTACCCActggcacaaactggttgaatcaacgttgtttcaacgtaatttgtcaacGTCTTGTGACGTGGAATCTAAGTGGAAAATACAAAAAGTCATCAACTgatgttttgagggtgaaatttctaCAACAGGATTATGTCGCCATTGTAACCAAATTTCGACCTAGACAAaccttgtaaaaaatatataccttTAAAACATCTTTAAAAGATCTTCAATGTCATATCCACtaccaaaataagaaaaaaaacaataggctgggcagcacctcctactggagaatgTATTTCTGTACAGATTCCCTTTGGTCTCCTACCCAAGGTTTTAAACAAGCCCAGCCCTGCTTAGctatgatatttgtcactgactctTACCAGTGCGATATCATGAGAATGATTTTTGCGAGTTCTCCACTTAATAATGATATAGATTCGCTGTTGCTCTCAAAGTCATTCCAAAAAGGTAGGTTTTAAGTAGCAAATGAAAAGAGACCATACTTTATCACTCATGTACTGTATCATCAACGatgctatttaggcctatatacagtagaaTCTGTAAAGTCATCAACAGGTATTGTTTCAGTTCAGCAGGCCTAGGCTTTCAAACTCTGGTTGATTTGAAATGTAATGATATgtagtgatattgaattgtgtttggttgtcaacgcaaccagagatcaacatttgaaggagttGTATCTTCTTTATGTTCcgtctgtgccactgacttaatTCATCATTTCTATGTTTGATTCACGTCTCAAACTCAACCAAAAATCGAAGTTAAGGAataggatggagatggagaagtGAATCTAACATTATTTGTAGAATAACTGGAATTGAAGCCAGACTTAAGTCAGTCGTACAGTTGGAacattgtattttgtatttattaaggatccccattagctgcctccatccagggcagcagctactcttcctggggtccagcaacattaaggcaattatatacaattaaaaatattac

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU838918 lncRNA upstream 21935 67882863 ~ 67883114 (+) True G738798
TU838913 lncRNA upstream 31541 67873275 ~ 67873508 (+) True G738793
TU838431 lncRNA upstream 100281 67802322 ~ 67804768 (+) True G738367
TU838407 lncRNA upstream 129409 67773448 ~ 67775640 (+) True G738344
TU838318 lncRNA upstream 327943 67576771 ~ 67577106 (+) True G738262
TU838959 lncRNA downstream 180 67924607 ~ 67983064 (+) True G738832
TU838962 lncRNA downstream 3083 67927510 ~ 67928146 (+) True G738835
TU838993 lncRNA downstream 65611 67990038 ~ 67992670 (+) True G738866
TU839101 lncRNA downstream 238967 68163394 ~ 68167095 (+) False G738972
TU839104 lncRNA downstream 238967 68163394 ~ 68167270 (+) True G738972
XM_036986048.1 mRNA upstream 135563 67759384 ~ 67769486 (+) False LOC110530969
XM_036986049.1 mRNA upstream 135563 67759384 ~ 67769486 (+) True LOC110530969
XM_021613433.2 mRNA upstream 178107 67693817 ~ 67726942 (+) True LOC110530410
XM_036986045.1 mRNA upstream 211407 67577846 ~ 67693642 (+) False LOC110530407
XM_021613468.2 mRNA downstream 261480 68185907 ~ 68198975 (+) False LOC110530418
XM_021613466.2 mRNA downstream 261652 68186079 ~ 68198975 (+) False LOC110530418
XM_021613467.2 mRNA downstream 261711 68186138 ~ 68198975 (+) True LOC110530418
XM_036986881.1 mRNA downstream 550976 68475403 ~ 68506363 (+) True LOC118965633
XM_021613481.2 mRNA downstream 949010 68873437 ~ 68898424 (+) True LOC110530424
TU838300 other upstream 357440 67546129 ~ 67547609 (+) True G738244
TU838049 other upstream 673136 67231182 ~ 67231913 (+) True G738020
TU837788 other upstream 689420 67170467 ~ 67215629 (+) True G737783
TU837166 other upstream 1102969 66798573 ~ 66802080 (+) False G737234
TU839857 other downstream 933956 68858383 ~ 68858753 (+) True G739648
TU839882 other downstream 978938 68903365 ~ 68906965 (+) True G739670
TU839922 other downstream 1079910 69004337 ~ 69005116 (+) True G739708
TU841127 other downstream 1611973 69536400 ~ 69538276 (+) True G740827
TU842479 other downstream 2701794 70626221 ~ 70626744 (+) True G742095

Expression Profile