RNA id: XM_036986881.1


Basic Information

Item Value
RNA id XM_036986881.1
length 1738
RNA type mRNA
GC content 0.47
exon number 3
gene id LOC118965633
representative True

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 68475403 ~ 68506363 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GGAGTTAAACACAGTGACTTCTCTCAGCAGTAGCATAATATGGGTGACACCAGATATTGAAGGCAAACCCCTCAAAATGGAACTGGACACAGGATCTGCATTGTCTATAATttccactactgtctacattgAGCACTTCAAGGCTACCAAGCTGAAGAACACAAATGTGTTGCTGAAGACCTACTCAGGAGAGAGATTGAGCCCAATGCGGGCGTTGCAGGTCGGAGTGCGGTATGGGGGGCAAACACAGCAGTTACAGCTGTATGTGGTGCCTGGAACTGGCCCCCCATTATTTGGCAGGGAATGGCTTTCAAAAATAAAGCTGAACTGGTGTAACTTGAAAATGCTCCACACGTTCCAGTCCAAAGAGAAAAGCACATACCAAACACTGGAACACTTGCGGAAGAAATACAACACAGTTTTCAGTGATCAGATGGGAACAGTAAAAGGCTTCACAGCAAAACTTGTACTGAGAGATGACGCAACCCCGAAATTCTGCAAAGCCATATCTGTTCCATACTCCCTGAGACCAAAGGTGGAAGCGGAAATCGATCGCTTGCAGGATACAGGGATCCTGACGAAAGTGGACAGAAGCGAATGGGCCACACCCATAGTTCCTATTGTGAAGAAAGACGGGTCTGTTAGAATGTGTGGGGACTTCAACGTAACTGTGAATTCAATGTTGTATGTGGACCAGTACTCCCTGCCACGTCTGGATGACATCTTTGCTGCACTAGCTGGTGGGAAACACTTCAGTAAAATCGATCTGAAACAGGCTTACCTGCAGCTACCGGTTGAAGAGAGCTCCAAACAGTACctgacaataaacacacacaaaggtcTATACAGGTATAACCGCCTGGTTTTTGGTATTGCATCGGCCCCAGCCATTTGGCAACAAACTATTGACCAGATTTTACAAGGAATCCAAGGAACCCAGTGTATCCTGGATGACCTGATCATAACAGGACACATCGACAAAGAACACCTGGCTAACCTGGAAGAGGTCCTGAAAAGACTGAACGAGTGTGGTCTACAGGCAAACTTACAGAAGTGTGAGTTCTTCAAAGACAAGATTGTCTTCTGTGGACATGAAATCGACCGCAATGGATTGcacaaaacacaggacaaaatCGAGGCAGTGTTTATGCCCATTCCAAATGGCCAGAGGTGTTTTGCGTTCCTCCACCTCAGCTCAGACGATAGAGTGTCTCAGAACAACGTTTGCGCGCTTCGGATTGCCGCTGCAACTGaaagatggaggcTGTCGGGtctggagaccaaggctatgtACATTGAGGACTCCCTGGCTGCAGGGGGTATCCGTCCTTCTGCCTCCTCTGCCGGCTCAGGGTTCTTCTCTGTgaagaaggacaaaaccctgcaCCAGTGGAACAACTACTGGGGCCTGAATGAAATCATAGTTAAAAAATGTTACACGCTTCCACTCCTCACCCTTGCATTTGAGCCTCTCCAGGAGGCTACCATCTTCTCCAAATTGGACCTCCGGAAAACCTACCATCTATTACAGATATGGGATGGGGAGACCAACTGTAACATGTCTAGTGGGAAAGACAAATACCTGGTGATGCCATTCGAACTGACCaacgctcctgctgtgttccaggaCGTGGTTAACGACATTCTCTTTGACATGTTGAACCAGTTTGTGATCATCTACCTTGATGACATCCTTGTTTTCTCCCGCTTGGCTCAAGAACATGTCCTCTATGTCTGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU839458 lncRNA upstream 201381 68273761 ~ 68274022 (+) True G739266
TU839401 lncRNA upstream 234612 68240482 ~ 68240791 (+) True G739226
TU839400 lncRNA upstream 235437 68239737 ~ 68239966 (+) True G739225
TU839393 lncRNA upstream 240232 68234950 ~ 68235171 (+) True G739218
TU839390 lncRNA upstream 242359 68232833 ~ 68233044 (+) True G739215
TU839827 lncRNA downstream 309756 68816119 ~ 68816346 (+) True G739622
TU839829 lncRNA downstream 311136 68817499 ~ 68817699 (+) True G739624
TU839839 lncRNA downstream 322425 68828788 ~ 68829043 (+) True G739633
TU839840 lncRNA downstream 322925 68829288 ~ 68829585 (+) True G739634
TU839844 lncRNA downstream 338677 68845040 ~ 68856024 (+) False G739638
XM_021613468.2 mRNA upstream 276428 68185907 ~ 68198975 (+) False LOC110530418
XM_021613466.2 mRNA upstream 276428 68186079 ~ 68198975 (+) False LOC110530418
XM_021613467.2 mRNA upstream 276428 68186138 ~ 68198975 (+) True LOC110530418
XM_036986052.1 mRNA upstream 550976 67904516 ~ 67924427 (+) False LOC110530413
XM_021613439.2 mRNA upstream 550976 67905049 ~ 67924427 (+) False LOC110530413
XM_021613481.2 mRNA downstream 367074 68873437 ~ 68898424 (+) True LOC110530424
XR_002474334.2 mRNA downstream 498883 69005246 ~ 69006608 (+) True LOC110529135
XM_021613485.2 mRNA downstream 512837 69019200 ~ 69045596 (+) False LOC110530427
XM_021613486.2 mRNA downstream 512846 69019209 ~ 69045596 (+) True LOC110530427
XM_036986060.1 mRNA downstream 540048 69046411 ~ 69116995 (+) False LOC110530428
TU838937 other upstream 552781 67906377 ~ 67922622 (+) True LOC110530413
TU838300 other upstream 927794 67546129 ~ 67547609 (+) True G738244
TU838049 other upstream 1243490 67231182 ~ 67231913 (+) True G738020
TU837788 other upstream 1259774 67170467 ~ 67215629 (+) True G737783
TU837167 other upstream 1674343 66798573 ~ 66801060 (+) True G737234
TU839857 other downstream 352020 68858383 ~ 68858753 (+) True G739648
TU839882 other downstream 397002 68903365 ~ 68906965 (+) True G739670
TU839922 other downstream 497974 69004337 ~ 69005116 (+) True G739708
TU841127 other downstream 1030037 69536400 ~ 69538276 (+) True G740827
TU842479 other downstream 2119858 70626221 ~ 70626744 (+) True G742095

Expression Profile