RNA id: XM_021613481.2


Basic Information

Item Value
RNA id XM_021613481.2
length 4805
RNA type mRNA
GC content 0.48
exon number 14
gene id LOC110530424
representative True

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 68873437 ~ 68898424 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

AACCAAGCTTCATCTTTTGCCTCGCCCTTTCTGTAATCTGCCTATGAGCGATGCTGTTGTGAAACTAGTTGAGAGACGCCGCCTATTGCAGTCTGTATAATCAAAGAATAAAGAGTTTACAATTTCGAAAAGGCCGAAGTTGATGTAGGCTACAACAGAAAATACTGAGCAGCAGATTTAAAGGATTAGGCTACACTTCAACAGGGGAGCATTTTACCTAAATCAACAATCATTCCAATGGCCCGTGTAGCCACAGCCACTGTTTTATTATTGCCGTTCATACTAACGTTTTTATGTGTGGTGGCAGCAGAAGGCGGTGGGCTGAAGCTGAGAAGACAGAAGAGAGAATGGATCATTCCTCCtaagaggttgaaggagaatgtAGATTACACCAGCCAAGAGTACATTGCAAAGATTCGCTCTGATGAGCAGTACACGTCAAAGGTGACTTACTCACTGACTGGGATCGGTGCAGACCAAAACCCCAGGAGCCTATTCACTGTCAACCCAAATACAGGCCTGGTCAGAATCAATGGAATTctggacagagagaagatacCTTCCTACCATTTACTTGGAGTAGCGACATACAACAATGGAAGCAAAGCAGAGAAGGACATTGACCTGCGTATTTCCGTTGAGGACCAGAATGACTGCCAACCAGTGTTCGTTTTTGGCCAATCTGGATCTGTTAATGAGTCCAGTGTTGCAGAAACCGTTGTCATGAAAGTTTTAGCCACAGATGCAGATGAAGTGAACACGCTACACTCTCAGATTTACTATAGCATAGTGCAGAAGAGTTCTTCAGATAGCATGTTCGCCATCAACTACCAGACTGGAGAGATCATGGTTCGCCAGACTACGCTggacagagagACCCAAGACACCTATACCCTGACTGTAAAAGGCTCAGACATGAACGGAGCAATGGGTGGAAACTCAGGAACAGGACAGGTGGTGATTAAAATCCTGGACATCAACGACAACATCCCCACCCTGGAGAAAGAATCTTACGAGGGGAGTGTGTTGGAGAACACGGTCAATGTGGAGGTGCTGAGGATCAAAGCCACTGATCTGGACCTGATGTACACTGAGAACTGGCTGGCTGTGTTCACCATCATCACAGGCAACGAAGCCGGCTACTTCACCATCACTACCGACTCCAAGACCAACGAAGGCATTATTATGATAACCAAGGCACTGGACTACGAGGAGCTGAAAGTGCTCAACCTTGCCATAAGTGTTTCCAACAAAGCAGTGTACTACTTTGGCTCCTCTTCTATGAgtggagggataggaggaggaggggttgcaGGCGGGGTTATGACGGGCGGTGGTAAGACCTACCCCATCAAGATAAATGTGATCAACCAGAAAGAGGGCCCCAAATTCCAGCCAATGGTTAAAGTGGTGACCATCTCTGAGGACTCCACCACAGTCACCATTAACAAGGTCATCACTACCTACGCAGCCATCGACAGTGACACACTACTGACTGCTACCAATGTTAGGTATGCCAAAAAATCCGATGTAGACAACTGGCTGATCATAGATGAAAAGACAGCAGAGATCAAGCTGAACAAAGTGCCTGATCGGGAGTCCAAATACCTGGTCAATGGAACATACTACGCCAAGATAATAGCCATCACAACCGATCTGCCATCCAAAACGGCCACAGGGACAATAGCTATCCAGGTGGAGGACTTTAACGACCACTGTCCCATACTGACAGCTACGGCTACGACCATGTGTCTGGGGGACACCATTGTGTATGTCAAGGCTGTGGATGGGGACACCTTCCCCAATGGAGCTCCCTTCAAGTTCAGAGTGATTCAGGGGGACAGCAAACAGAAGTGGACAGTGGAGCACCTCAATGCTACCACTGCCATTTTACGAGACCATGCCCACATGTGGCCAGGTCACTACAAGGTTGCTGTGGAGATCAGTGACCAGCAGGGGAAGGCCTGTGCTGACATCCAGATTCTGAACGTGGATGTGTGCACCTGTGATCAGGTCAATAAGGTCTGCTTCGCCCGGGAGATGGGTAAGGACGTCACATTAGGAGCATCTGCCATCCTGCTGCTCCTTCTGGGCCTCCTGCTGTTGCTGCTGGTGCCCCTCctgctgctgttctgtctgtgtggAGGAGTGGCGTCCATAGGTGACTTTAAGGCCATGCCATTTGACACTAAAGAACACCTGATTCCATATCACACCGAGGGACAAGGAGAAGACAAGGAAATTCCACTCCTGCAAATTCCTGTGGCGATAGATGGCTCCATCAAAGTTGTTGACTTGGCAAACAACGGGGGGGGGATGGGATTAATAAGAGATGCAGGGGCTGCAGGAGGATCAGCAGGAGGAGTGTTCGGGGACGGCTTCACCCCGTCCGCAATAAGCACATGGGAGCACAACCATTCCCATGGCTCCCACCAGCCCAGCGGCAGAGTGAAGGTGAGCTACGGCGTGGGTGGAGGAACCATGACTGGACATGAACACTTTTCCAGATATGGAGCTGGAGCTTATGACGGGGTCGCTCTCTCCGAGGGAGACCTAGAGGAGTACTACTCTGCAAAGGCCAATCATGCTGCGCAGAACGACCAGCAGAGAGATGACCTACTGATCTACGACTACGAAGGTCAGGGGTCACCGGTAGGCTCTGTTGGCTGCTGCAGCCTCCTGGGGGCCGATGACGACCTGGACTTCCTCAACGACCTGGGGCCCAAGTTCAAGACCCTGGCCAAGATCTGCCAGGGGTCAATAGCTATGGAGGCGGAGACTGTCAACATGTCTGTGTCATCCCCTAGACCTAGGCCTAccacatccacccacacagaggTCAATAGAGACACAGCTCTCAATGTCAATACCCTGAACACCtcatccaccacctccacctcctccacaccccTACAGGAGAACCTGGTTACTCGGGCCCAAGGATCAGCCACCATCCGCAAGGTTCAGGAGAACAAGGTGATGCCCAACAAGACCCTCTTCATCCAGCAGCCCCCTATGTACTACGCTGCTGCCCCCACCATGTACATGGTGGAGCCCCAGCCCCAGTTGGTGCTGGtggagcagagagggggaggtggttaTGTCCGTGCCCAGCAGGCGGTAAGCCAGGTGGGGGTAGGGATGGGTCAGGGGGTGGTGCAGGTAGGAGGGCTCCATGGTTCTCAGGGCATGATTTTACTGGAGAGGCAGGTAGGAGCAGGTGGTAGTGGGGAAGGACAAGGTCATGTTGTTATGGGGGCAAGCCAGGTCTTACAGGGAGCGGGCCACACTATTTTGAGGGGAGGTCACATTATTACAGAGACGAGCCAAACCATTACACGGGGAGGCCAGGTTCTACAGGGGGCAGACCAGACCATGATCGGAAAAGGCCATCTATCGCCAGGAGGAAACTTCTCACAGGGAAGCCTTTCCGGGTCCAGGAAAGTGCTGGTTGTTGAGAGCGGGTCTGGGTCAGCCTCGGCAGCAGGGTGCAGCGCAGGCTTAGGTGCTGCCCAGGTCACCATGCTGCAGAGCggccaggggttagaggtcaaatGTCATAGTGTAGAAGTGAGAGGTCAGAGTGGTGCTTCCTCGTTGAGCTCCAGCTCCCTGTGTGGCACGGCAGGGTCAAACGAGGCCTCTGCTACTGCTGTCAAAGTCACCACCACACCCACAGCTGCACCCTGTAGCAGCAGCCACACAGCTGTGGTGCAAGAGAAGAAAATATCGGTCACTGAGAAATACGTTGAGACCAGTACTATAGCGTAGAAAAACAACTTCACATCAGCTTGATAAAATACTGTACACTGTGGGTTTAAAGGTGATttctagggagagagaaagagatagagagatagaggtactGGTGCTTTCTGCTGGTCTGACTGGTGCTCTCTGCTGGTCTGAAATACAGGAATTCTACCCATTGTTTCTTAACAACTCTTTTATAACACTTTTAGATTTTATTCTCACGATTACCAGATGGTATATAATCCTAATTATGATTCATTGATACATTGTGAATTAATGATTGAGTTGAAGATACTTGATTACAGAAGAAGAAATTGAATAAAAAGAATGAAATCATGGAATCGAATCAGTATTTGAAAGGAGTGAAATATTTTTCTAAACATTCAAATGTTGTGGTGGGTGATGTATTAATTGTTCAGGTGAGAAAATGTGTCTATCTTTGATAAAGCTTTTTTTACTGGGATTGTCAATTCTTGATGTAATTCATAGTTCAGACCTTCCATTATCAATTCTACACAGTTTCAATTTGGTTTTAGTAATTTTAATGTATATTGATAACATACTGTGTTATCAATAGTTCGTATCCCCCcacaaattatatatatatatatttattgttgtttttttactcaAAGAACCCGCGGCCGTTATGTTAGACACCCCTGCATTAAAGTTTGAGATTGATGTTGACCTGGCTGCAAGCTTTCATGTctaatatattatactgtatgcGTCATGAGATATGGCGTCTGCCTGCAGTATGTCTGTCCTTCATTGTGAGCTAAAAGGTTTGATGAAATGTTTTCTGATTTTGAGAGAATAATAAACTTGAACATATACCATACACATTCAGTTAGTCATGTGTTATGGTTTCATGCAATTTCTTTCTTAGAATCTCACTCCTGTAGTGTTTCATTGGTTCTTCTGGAGATTGAGAGTGGAAAATTCTGTTTTATAGTATCACTCTTATCACACCTTGACATCTTTACATACTGTAGTTCAGATGTTATCACTGCTCAACCGAAAAAATTAATAAAGATGGCTCTACCAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU839844 lncRNA upstream 17413 68845040 ~ 68856024 (+) False G739638
TU839846 lncRNA upstream 17413 68854381 ~ 68856024 (+) True G739638
TU839847 lncRNA upstream 26701 68845040 ~ 68846736 (+) False G739638
TU839840 lncRNA upstream 43852 68829288 ~ 68829585 (+) True G739634
TU839839 lncRNA upstream 44394 68828788 ~ 68829043 (+) True G739633
TU839949 lncRNA downstream 100748 68999172 ~ 68999388 (+) True G739735
TU839950 lncRNA downstream 101747 69000171 ~ 69000626 (+) True G739736
TU839924 lncRNA downstream 105093 69003517 ~ 69004130 (+) True G739710
TU839960 lncRNA downstream 147178 69045602 ~ 69045872 (+) True G739746
TU839967 lncRNA downstream 219139 69117563 ~ 69119121 (+) True G739748
XM_036986881.1 mRNA upstream 367074 68475403 ~ 68506363 (+) True LOC118965633
XM_021613468.2 mRNA upstream 674462 68185907 ~ 68198975 (+) False LOC110530418
XM_021613466.2 mRNA upstream 674462 68186079 ~ 68198975 (+) False LOC110530418
XM_021613467.2 mRNA upstream 674462 68186138 ~ 68198975 (+) True LOC110530418
XM_036986052.1 mRNA upstream 949010 67904516 ~ 67924427 (+) False LOC110530413
XR_002474334.2 mRNA downstream 106822 69005246 ~ 69006608 (+) True LOC110529135
XM_021613485.2 mRNA downstream 120776 69019200 ~ 69045596 (+) False LOC110530427
XM_021613486.2 mRNA downstream 120785 69019209 ~ 69045596 (+) True LOC110530427
XM_036986060.1 mRNA downstream 147987 69046411 ~ 69116995 (+) False LOC110530428
XM_036986059.1 mRNA downstream 150285 69048709 ~ 69116995 (+) True LOC110530428
TU839857 other upstream 14684 68858383 ~ 68858753 (+) True G739648
TU838937 other upstream 950815 67906377 ~ 67922622 (+) True LOC110530413
TU838300 other upstream 1325828 67546129 ~ 67547609 (+) True G738244
TU838049 other upstream 1641524 67231182 ~ 67231913 (+) True G738020
TU837788 other upstream 1657808 67170467 ~ 67215629 (+) True G737783
TU839882 other downstream 4941 68903365 ~ 68906965 (+) True G739670
TU839922 other downstream 105913 69004337 ~ 69005116 (+) True G739708
TU841127 other downstream 637976 69536400 ~ 69538276 (+) True G740827
TU842479 other downstream 1727797 70626221 ~ 70626744 (+) True G742095
TU843350 other downstream 2797178 71695602 ~ 71706542 (+) False G742860

Expression Profile