RNA id: XM_021613486.2


Basic Information

Item Value
RNA id XM_021613486.2
length 7960
RNA type mRNA
GC content 0.52
exon number 24
gene id LOC110530427
representative True

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 69019200 ~ 69045596 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

AACAAGGGCGTTTTTTCTTTTGAGACAGGTCTCCGTCCAAAAACAACACTCTTCCGTGTTCTCAGTAGTACGATATCGGCGCAACGGGAGACGTCGTCGACTGTGAGCGCAGGGACGAGCTCCATTGACGTTTAGGACTACATTTCTTTCAATACCATTTACCTTTTTTAACAGAATTGCAAATCATAAACAGGACTGGAAATTAGTATGTACGGCTCTCAAAGTAGACTTCCGACCATTATTCGGAGGACTAATTCTCGACCAGACCTGACGAGCGGCAGTTTCACCATTCCCAGGAATGACGGCAGCCAGGTCTTCGTCGGTGGAAACGGCTATCAACAGGAATATGGAGATGGATACACCTATTCACAAACTTACTCCAAATCTTCCTtggggggaggtggaggtggaggagcctACGGAGGGGGTGTTGGTGGGTCATACGGAGGGGATGGTGGAGGGGGCTACgtagggggaggtggagggggctaCGGAGGTGGAGGGGGAGCAAGTGTGCAGAGCATCCAAAAGAGAGCATCCATCCTGCAAGGCCAGTGTCGGGAGTACCTGCAGAGAGTACAGCAGATTCTCCAGGCACGTGGCCCAGCGGTGGAGGTGGACAAGCTGATGACTATGTCCTCTGAGACTATAGACCAACTGAATGAATGTGCCATAGAGCTGCAGCAAATGAGACAACCCAACGACATCATCATCAGGAGCGTACAGCAGCTCCAGAGCATGCAGAGTGGGATCATCTCCTCCATCAGTGGGACAACCCAGAGGCAGAACAGAGGAAGCAttggctgggaggagagagggaggtcctACGCTGATGCCATGTCCTGGATAGGCCAACAGAAGcgtTTGATCGAGACGTCTCCGTGGGGTGACGACGCGGCCACCATCGAGCAGCAGATCCTCAGCCAGAACAAGTTACACAGCTCTATACAGAGGAGCCATGAGGTGGATCACGCCAGGGATGAAATGGCCCAAAAGGATGACAAGGGTGGCCTCCATTCCCTGCAGCAAGAATGGGACAGTCTGCAGAAAATGTCATTTGCTCGTACGGGCCAGCTGAGAGAGCTGCAGAACATCATCGAGGAGATCTCCAGGGCCATCATGTGGGTcaacgagagagaggaggaggagctggtgTTCAACTGGGGAGACAAGAACATCGACGTCTACATCCCCAAGAAACAGGAGAGCTACTCCAAACTGATGAGTGccctggaggagaaagagaaggagctgAACAAACTGAAGCAGAAagtggatggtctcctgaagaACAATCACCCAGCTTCAGACAAGATAGAGGCCTATATGGACACTCTGCAAACCCAGTGGAGCTGGCTGCTCCAGATCACCAAGTGTATTCATGTCCACCTGAAGGAGAACGCTGCCTACAGCCAGTTCTTCAAGGAGGCCAATGAGACCTACAGCAAGCTGCAAAAGGACCATGAGATCATCCGTAAGAAGTTTACCTGTGATAAAGGAACACCTCTGGAGAACCTCACTGAGCTCCTGAAGAACCTTGAGagagagaaggagagggtcaTGGAAAATAAGAGGCAGGTGAAGCACCTGGTGAATAAGTCCAAGAGCATCGTGAGGCTGAGACCACGTAACCCTGAAGAGAAGAGCAGCACAGCTGTTATAGTGCAGGCCCTGTGTGACTTCAAACAGGACCAGAAAGGGATCTTAAAGGGGGACGAGGGTATCCTGAAGGACAACTCCCAGCGCAGCAAGTGGCACGTGACGGGTCCTGGAGGTCTGGACATGCTGATCCCATCTGTGTGTCTCCTCATCCCCCCGCCCAATCCCCTAAGCATCGGCCTGGCCAACAAGAATGAACAGTACTATGAGGCTATCATGGGCATCTGGAATCAGCTCTACATCAACATCAAGAGCCTCATCTCCTGGCAGTACTGTGTCAAAGACATCAACCATATCAACTCCCTCACCCTCACCATGCTGTCCCAGATGCGTCCTGAGGAGTACCGTAACATCATTAAGAGTCTGGAGACTCACTACCAGGAGTTCCTCCGCAACAGCCACGGCTCTGAGATGTTTGGAGAGGATgagaagaagaagatggagggcCAGTATTCTGGAGCCCAGAGCCACTACGACACACTGGTCATAGGGCTGCCTACATACAATCAATCCAACGTGGTGGTGGTCCAGCCTGAGCCGCCCATCAAAGCTAACACTACCAAGATCACCAATACCTCATTGAAGGAGACCAGCATCTCCACCCAGGGCTCTAACATGAGCCTGACCCTGCTCAGTGACCTCCAAGCCCTCAGACGCAGGCTGGAGCTGGCTGAATCAGGCCTCAGCCACCACCTCCATGTTTCCCTGGGGGAGAACAGTGTGCAGGAGTGCTCACAGCACCTCCTGAAGCTGGAGGGCATACACAATGACCTGGACGGTGTGCGTGATGAGTAcctgagactgagggagagggtgGTGAAGCAGCTGGAGGGGACGGCAGCAGACTCGGAGCAGGCCAAGTTCCTCAGGAAAGAGCTGGATCTCCTCAACCAGAAACTGGGAGATCTGCAGGGGCTGTCCTCTGCCTACCTCCAGAGACTGTCATATCTGCAGAACTTGCACCAGAGCCTCATCCAGGCTGAGGATGTCATCAAGGTCCACGAGGCCCGTCTGACTGAGAAGGAGACCACCTCCCTGGATCTCAACGAGTTGGAGCGCTACAGAGCTACACTCAAGCAAATGAAGTCTGACCTGGAACATAAGAGAGACCTTCTGACGGCCATGGAGAGTGACCTGGCCAATGCAGTCCACGTGAACAGTCAGATCTCAGCTTCCTTACACAAGTGTGATGTGGACCTGTCCAAGTACGCTGATCTGGTGACCCAGATGTCTGACCGCTGGAGACGCATCCAGACCCAGATCGACAGCAGAGTGTGGGACCTGGAGAAGCAGGAGAAACAGCTGAGACATTTCCAGCAGAGCAGCGGAGTGGTTGACCAGTGGATAGACAACGCTAGACAGCGCCAGGACACCCTGCAGACAGCCAAGTTTAGCAACATCCAGGCTGTCATGGAGCACCTCAACCAACAGAAGGTGCTGCACAGTGAGATCAAAGGGAAGAAGGAAAAGGTGGAGGATGTACAGAAGGATGCGGACACCTGCGCTGCCTCCATTAAGGACTATGAGCTGCAGTTGGCCTCCTACAGTGCAGGACTGGAGACCCTGTTGAACATCCCTATCAAGAGAACCATGCTCCAGTCCCCTGCCACTGTGGTCAGACAGGAGGGTGCTGACCTCCAGTCTCGCTACATTGAGCTCCTGACCCGCTCCAGTGACTATTACAAGTTCCTGGGGGAGATGCTCAAGAACATGGAGGAACTGAAGATTAGGAACACCAAGATTGAGATGCTGGAGGAGGAGCTTCGTCGTCTAAAGGAGGACATCGGGGGCCACAGCCAGAAGAACCGTTCCTTAGAGGACGCCCTGTCCCGGTACAAGCTGGAGCTCTCACAGTCTAAAGAACAACTCATCTCCATGGAGGAGGTGAAGAGGACCACAGCTGTGCAGGTCAGCGTGGCCAGGGAGAACCTGGACAACACCAGCAGCCAGCTGACTGAGCTCAACGACAAGTTGGCCCGTCTCACCTACCAGCTGGACGAGGAAAAGAGGAAGAAGAGGCTGGCTGAGGAGCGCTATACAAGCCAGCAGGAAGAGTACGAGGCGGCCGTGCGCCGGCGCCAGAAGGAGCTGGACGAGCTCAACTGGTCCAAGATCGACTTGGAGAAGGCAGTGAAGGACAAGGAGCGCGAGCTGGAGAGGCTGAGGATGCAGCTGGAGGAGGAGGCCACGAGGAGGCGTGGGGCGGAGCAGGAAATCTCTAAGACCTCCATGATTGTGCAGAAGTCTCAGACCAACTACACTGAAATCCTGTCCGATAGGGACGCCCTTCTCATCAAGTTGAAGCAGCTGGAACAGGACAGGTCCCAACAGGGTCACTATAAAGAGGAACTGAATCGCATCAAGGTTTCCCTGGAGACTGAGCTGCGCAACAAACAGCGTCTCCAAGAAGAACGAGATAAGATGCAAAAGGACTTCACCTACTGGAAGAGCCAGTACGAACTGAAGGAGAACCAGATGAGGCAGAGCGACTCGGACAAGGGCAAAATGGAAAGGGAGAGACTCTCGCTGAAGAGCGAGTTGGAGCGTATGATAGTGGAGCTGAGGACCGTGGAGGAGAGGTATAAGGGCAGGCTGCAGAGTTCAGAGAGGGAGGTGTCAGACCTGGCCCTGAAGAGAGACGCCCTGGAGAAGGAGTTGCGGAGGCGTCAGCAGAGACCTGACTCCATGAGCATCCAGACCCAGACAGACGAGAAGGTGGTCACCGTGGACCCGTCTAAACTGGTTTTCGATGGGGTTCGCCGTAAGGTCACCGCCCACCAGTTGTGTGACTGTGGCATTATCAGCAAGGCCACCTTGGAGCAGCTGCTGAAGGGAAAGAGGACCGTGGAGGATGTGGCCGTCGACATCCAGCTTAGCCTCAAGGGAACAGGCGTCATTGCAGGCATGGTCAGAGGACCCCAGGGCAGGATGTCCATCACTGAAGCCAAAAACAAGAACCTTCTGAGCAAAGAGAGTGCCCTAATGCTACTGGAGGCACAAGCTGCCACCGGCCACATCATGGACCCCAAGTTTAACGAGAAGATGTCTGTTGATGCTGCCTCCTCCAGAGGAGTGGTGGACACAGACGATAGAGACGCCCTCATGACAGCTGAAGCAGCCAGTGCAGGCTTCAAAGATCCATACACCGGCAAGCTGCTGTCCATTGGACAGGCTCTGAAGCTGAAACGTCTGGACAAGGAGACAGCCCTCCGGTTGCTACAGGCCCAGGAGTCTGTTGGAGGAATCCTAGACCCAGTTCTGAGTGTTTTCCTGCCCAAAGACCTTGCCCTTGACCGCAATCTGATTGATGAAGACCTCTACAGGGCTCTGAACAAGAAGCCAGCCTGCTATCTGGATCCTGTCACTGAGAAGAAGATCAGCTACAGTGACCTAATGTTGAAGTGTAGGATTGAGCCCGCCTCTGGCATGCTGCTCCTCTCAGCCCCGGAAAAGCCCATGACCGTGCAGGGCCTCAGGGGAGAGGTGTCCGTCACAGAGCTGATCAAATCCAACTTGCTGACTGAGACAGATGTACAAAAGCTGAACCAGGGCAAGCTCAGCAGTAAGGACATCGAGGACAAGCTCAAGAACTATCTGCATGGTTCTAACTGTATAGCAGGGATCTATGATGAAGCCAACAACAGGGCAATGACCTTCTACCAGGCCATGAAGGATGGTCTGCTCAGACAAGGAACCACCCTGGAGCTTCTGGAAGCCCAGGCTGCCTCTGGCTTCATGATCGACCCTGTCAACAATGTCTGCCTGACTGTGGATGAGGCCTGGAAGAGAGGCCTTGTGGGCAAAGAGTTCAAGGACAAGCTGATGTCTGCAGAGAGGGCCGTCACTGGATACAAAGACCCACACACTGGCAAGACCATCTCCCTCTTCCAAGCCATCGAGAAGGATCTGATTGAGAAGGGCCATGGGATCAGGCTGCTTGAGGCTCAGATAGCCAGCGGTGGCATCATCGACCCTAAGGAGAGCCACCGTATCGATGTAGACATCGCCTACAAGAGGGGCTACTTCGACGAGGAGATGAATGAGATCCTGACCTATGAAGGAGATGACACCAAGGGCTTCTTTGACCCCAACACCCAAGAGAACCTGACCTACCTGCAGCTGAAGGAGAGGTGCATCACAGACCCCAAGACTGGCCTGGTTCTCCTACCCCTGAGAGACAAGACCAAGCCCCAGCAGACGGTTCAGCAGAGCAGCCAGAATACCATCCTCCGTAAGAGGAGGGTAGTGATCGTGGACCCTGACACTGGAATAGAGATGACCGTGAGGGAAGCCTACCATAAGGAGCTCATTGACTATGACACCTTCCTAAGTCTTTCAGAGCAGGAGTGTGAATGGGAGGAGATCACAATCACAGCTTCTGATGGTTCAGCCCGTCTGGTGGTGGTGGACAGGAAGACAGGCACCCAGTATGACATCCAGGACTCCCTGGACCGTGGCATCATTGACCAGACCTCTCTGGAGCAGTACCGATCAGGAACCCTGACTCTCCCTCAGTTCGCTGACCTCATCACCAGCAATAGCAACCTCAGCGAGTTGACAATGACCGCCAGAAACATGGAGGATGTGGCCACCTGCAGCAGCCCCCCCCAGGCCCGCCCCTCTTCCCCCACCGTCCGCAAGCGTTTCAATAACATCTCCATCATCTTCTCCCCGCCAGAGGAGTTTGACGAAGGGAGCCCTGTTGCGGCCATCTTTGACACTGAGACGATGGAAAAGATCACCATTCCGGAGGCTCTACGGAGAGGCTTAGTGGACGCCATTACAGCTCAGAGGTTGCTGGAGGCCCAGGCGTGTACTGGAGGCATCATCAACCCCACAAATGGTCAGAGGCTCAACCTACAAGATGCTGTTCACCAAAGCATCATTGACAATGACATGGCCACCAAGCTGAAGCCAGCCCAGAAGGCCTTTATGGGCTTTGAGGACATGAAGACCAAGAGGAAGATGTCTGCGGCCGAGGCCATGAAGGAGAAATGGCTGCCTTATGAGGCCGGACAGAGATTCCTGGAGTTCCAATACCTGACAGGAGGTCTGCTGGAGCCCGGTACGGGCCAGAAGACCTCTATCGAGGAGGCAATCCGACGAGGCTGGCTGGACGGTCGTGGAGCCCAGAAGCTCCAGGACACGCGGAGCCACGCCAAGAACCTGACCTGCCCCAAAACCAAGCTGAAGATCTCCTACAAGGAGGCCATGGATAGCTGCATGGTGGAGGAAGGCAAAGGCATGAAGATGCTCCAGGCCTCCTCCATATCCTCCAAGGGCATTAGTAGCCCCTACAACGTGTCCAACCCAGGCTCCCGTTCGGGCTCCAGGACTGGCTCTCGTACAGGGTCTAGGAGTGGCTCTCGCAGGGCCAGTGTGGATTACTCCTCCAGTTTCAGCTCATTCACAACTTCTTCCTCCACCACCTTTAGCTCCAACTGACAGTTCTATTATTAAACACacttacagagaaaagagggtgTGGAGTAGATTGGAGTAGACTGCCTATGTGATGTGGCACATTTATTATGGTTATGGAAGATGGAAAGTGGGTTAGGTGGGGTTAACATTTGTGATGTGGTATATTTTTCATTAATTGTGTTTAGTTGGTGTTTTGTGCTGTCAACTAAATCTGGTTGGGGGCATAAAGGCTGGGTATATTGAGAAATATGTTAGAATGTTTTGTTAGGATTCATTCTGGATCTATGTCAatgtttagatttgtttaaacTTGGGTAAAAAGGAATTTAATGTTGAAATATATAACATTTTACCAACAAAAAAAACGGCTTTTAAATTGTACTTAGCTTTGTTTTTATGTAGACACATGGTTGTTGTTTACTTTGAATGGGAGGGAATCAATTACTGTTTCAAAGATCCTTGACTCACAGCATCTACaacaggggtaggcaactagattaAGCCACAGGACCATTTTTGTCGGAGTGAATGGCCTTGCCTTGGAAAATAGTAAGaatcatttgtacactgcaaattgaccacaactaagccccAAAATAGATTATATTTGAAAATAACATTGATACACAATCAgtttttaaaaacattatttgtgggaatacttgTGAAAATATTTTGtaaattaaacacatttttagcTGAATGGCTGGTGATTTTAGTCTTTTTGACCAAAAACTAACCCCCACTCTTCTTGATAATGGCATATATTTTACAACACAATGTGCTGAATTATAAAACAAGTAATAAACCATTATGAATGAAATAATGTTGTATTCCAAATGATTGAAAAATAAAAGTTTATAATTCCCAACAGTCA

Function

GO:

id name namespace
GO:0005856 cytoskeleton cellular_component

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU839924 lncRNA upstream 15079 69003517 ~ 69004130 (+) True G739710
TU839950 lncRNA upstream 18583 69000171 ~ 69000626 (+) True G739736
TU839949 lncRNA upstream 19821 68999172 ~ 68999388 (+) True G739735
TU839846 lncRNA upstream 163185 68854381 ~ 68856024 (+) True G739638
TU839847 lncRNA upstream 172473 68845040 ~ 68846736 (+) False G739638
TU839960 lncRNA downstream 6 69045602 ~ 69045872 (+) True G739746
TU839967 lncRNA downstream 71967 69117563 ~ 69119121 (+) True G739748
TU840025 lncRNA downstream 100039 69145635 ~ 69147221 (+) True G739802
TU840044 lncRNA downstream 135917 69181513 ~ 69192634 (+) True G739821
TU840042 lncRNA downstream 136520 69182116 ~ 69182446 (+) True G739819
XR_002474334.2 mRNA upstream 12601 69005246 ~ 69006608 (+) True LOC110529135
XM_021613481.2 mRNA upstream 120785 68873437 ~ 68898424 (+) True LOC110530424
XM_036986881.1 mRNA upstream 512846 68475403 ~ 68506363 (+) True LOC118965633
XM_021613466.2 mRNA upstream 820234 68186079 ~ 68198975 (+) False LOC110530418
XM_036986060.1 mRNA downstream 815 69046411 ~ 69116995 (+) False LOC110530428
XM_036986059.1 mRNA downstream 3113 69048709 ~ 69116995 (+) True LOC110530428
XM_036986061.1 mRNA downstream 89975 69135571 ~ 69148676 (+) True LOC110530431
XM_021613491.2 mRNA downstream 217926 69263522 ~ 69354693 (+) False LOC110530432
XM_021613492.2 mRNA downstream 217926 69263522 ~ 69354693 (+) False LOC110530432
TU839922 other upstream 14093 69004337 ~ 69005116 (+) True G739708
TU839882 other upstream 112244 68903365 ~ 68906965 (+) True G739670
TU839857 other upstream 160456 68858383 ~ 68858753 (+) True G739648
TU838937 other upstream 1096587 67906377 ~ 67922622 (+) True LOC110530413
TU838300 other upstream 1471600 67546129 ~ 67547609 (+) True G738244
TU841127 other downstream 490804 69536400 ~ 69538276 (+) True G740827
TU842479 other downstream 1580625 70626221 ~ 70626744 (+) True G742095
TU843350 other downstream 2650006 71695602 ~ 71706542 (+) False G742860
TU843344 other downstream 2659047 71704643 ~ 71715616 (+) False G742860
TU843351 other downstream 2659047 71704643 ~ 71715616 (+) False G742860

Expression Profile